Gcaud7412.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7412.t1
Unique NameGcaud7412.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length265
Homology
BLAST of Gcaud7412.t1 vs. uniprot
Match: A0A2V3IH71_9FLOR (DNA excision repair protein ERCC-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH71_9FLOR)

HSP 1 Score: 369 bits (947), Expect = 1.270e-126
Identity = 185/262 (70.61%), Postives = 214/262 (81.68%), Query Frame = 0
Query:    1 MSETPFKRSATHGADENSTKQWNSALLNPPKRLRSEANSSNIAAALAHARSKVALLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPFKGDWQEIEETPDED 262
            MS    K +     DE   +    A  NP KRL+  ++S  +A ALAHARSKVALLVH  QL NPMLRHIRHVRK+P+  I ADFVCGPTTCALYLSLQFH+LHP+YIYKRVR LGT FKLR+LLVLVD+ADH A L ELTKMCLIN MT+IC G +REAARYLETF+SYDGKG + IQER+A+DY+S+L+AALSSVRG+NRTDV TLAFTFGSFR  + ASREELRQCPGIGERKV+RL+QALHQPF+GDW+E++E   ED
Sbjct:    1 MSTASGKHTIATSDDEQHEEPKGLARTNPQKRLK-PSSSDPVAVALAHARSKVALLVHPNQLRNPMLRHIRHVRKQPHNGITADFVCGPTTCALYLSLQFHRLHPDYIYKRVRALGTSFKLRILLVLVDVADHRASLHELTKMCLINSMTIICTGSEREAARYLETFQSYDGKGADSIQERVANDYASKLNAALSSVRGINRTDVNTLAFTFGSFRGTAEASREELRQCPGIGERKVSRLFQALHQPFQGDWKEMDEDQQED 261          
BLAST of Gcaud7412.t1 vs. uniprot
Match: R7QRG6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRG6_CHOCR)

HSP 1 Score: 286 bits (731), Expect = 3.970e-93
Identity = 137/217 (63.13%), Postives = 176/217 (81.11%), Query Frame = 0
Query:   46 LAHARSKVALLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPFKGD--WQEIEETPD 260
            LAHARSK+ALLV+ +QL NP+LR+IRHVR E +  + ADF+CGPTTC  +LSLQ+H L+P YIY R+R+LG  F+LR+LLVL D+ +H   L ELTK+ L++ +T+I AG + EAARYLETFRSYD KG E+IQER+A DY+SRLHAAL SVRG++RTDV+TLAFTFG FR++ +A+++E+R CPG+GERKV+RLY ALHQPF+ D  W  IE   D
Sbjct:   89 LAHARSKLALLVNRRQLGNPVLRYIRHVRYEVSDGVTADFLCGPTTCVFFLSLQYHLLNPRYIYSRLRSLGRAFRLRILLVLADVPEHRPPLHELTKLGLVHDLTVIVAGSRAEAARYLETFRSYDAKGAEIIQERVAGDYASRLHAALGSVRGISRTDVSTLAFTFGKFRNLGNATQQEIRACPGVGERKVSRLYAALHQPFRSDVPWMGIEGETD 305          
BLAST of Gcaud7412.t1 vs. uniprot
Match: UPI001E1DCF54 (DNA excision repair protein ERCC-1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCF54)

HSP 1 Score: 249 bits (635), Expect = 3.430e-80
Identity = 119/186 (63.98%), Postives = 150/186 (80.65%), Query Frame = 0
Query:   66 MLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPFKGD 251
            M+RHIRHVR   + +I  DFVCGPTT  LYLSLQ+H LH +YIY RVR +G  ++LR+LLVLVD+ DH   + ELTK+ L++ +TLICAG +REAARY ETFRSYDGK  + IQER+ +DY+S+L AAL SVRGVN+TD  TLAFTFG+ ++++ AS EELR+CPG+GERKVARLY AL+QPF+ D
Sbjct:    1 MIRHIRHVRVAFDSDIVPDFVCGPTTAVLYLSLQYHNLHQKYIYVRVREMGRAYRLRILLVLVDVDDHRRPVHELTKLSLLHDLTLICAGSEREAARYCETFRSYDGKTADSIQERVGEDYTSKLTAALCSVRGVNKTDAATLAFTFGALKNLAGASEEELRRCPGMGERKVARLYAALNQPFRTD 186          
BLAST of Gcaud7412.t1 vs. uniprot
Match: A0A0L0HJX7_SPIPD (DNA repair protein rad10 n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HJX7_SPIPD)

HSP 1 Score: 216 bits (550), Expect = 2.640e-65
Identity = 108/209 (51.67%), Postives = 152/209 (72.73%), Query Frame = 0
Query:   40 SNIAAALAHARSKVALLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPF 248
            +N  +A   ++   +++V++ Q  N +L  I++V  E   +I  D+  G T+CAL+LSL++H+LHPEY+Y R+R LG H+ LR+LL LVDI DH A +R+LT++C+ N +TLI A  Q EA RYLETF++Y+ K P+LI+ER+  DY S+L  AL+ V+ VN+TDV TLA  FGS ++I SAS+EEL QCPG GE+KV RLY+A HQPF
Sbjct:  136 TNSTSAPQRSKGTHSIVVNSCQRGNGVLNFIKNVPWEYG-DIIPDYQVGMTSCALFLSLKYHRLHPEYVYTRIRQLGHHYLLRILLCLVDIEDHQASIRDLTRICVYNNITLILAWSQEEAGRYLETFKAYEHKPPDLIKERVDPDYLSKLTDALTQVKSVNKTDVLTLASAFGSLQNIMSASQEELAQCPGFGEQKVRRLYEAFHQPF 343          
BLAST of Gcaud7412.t1 vs. uniprot
Match: A0A1Y2GKT9_9FUNG (Restriction endonuclease type II-like protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GKT9_9FUNG)

HSP 1 Score: 207 bits (526), Expect = 7.430e-63
Identity = 100/202 (49.50%), Postives = 143/202 (70.79%), Query Frame = 0
Query:   50 RSKVALLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPFKGD 251
            +SK  ++V   Q  NP+L+ I++V  E    I  DF+ G T+C LYLS+++H+LHPEYIY R+ TLG  F LR+LLVLVD+  H   +RELT++ ++N +TL+CA    EAARY+ET+++Y+ K P+ I+ERI++DY S+L   L+ ++ +N+TDV TLA TFGSF++I +A  +EL   PG GERKV RL +A  QPF  D
Sbjct:   52 KSKSTVVVKPSQRGNPLLQFIKNVPYEYG-EIVPDFIVGLTSCILYLSIRYHRLHPEYIYNRISTLGKTFVLRVLLVLVDVEMHQQAIRELTRVAMLNNLTLVCAWSNEEAARYIETYKAYENKAPDAIKERISNDYISKLTDCLTQIQSINKTDVVTLASTFGSFKNIMNAPADELGVLPGFGERKVKRLLEAFDQPFAID 252          
BLAST of Gcaud7412.t1 vs. uniprot
Match: A0A197JR51_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JR51_9FUNG)

HSP 1 Score: 203 bits (516), Expect = 1.590e-59
Identity = 96/202 (47.52%), Postives = 141/202 (69.80%), Query Frame = 0
Query:   50 RSKVALLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPFKGD 251
            +SK AL+V + Q  NP+L+ IR+V  E    +  DFV G T+C L+LS+++H+LHPEYI+ R+ +L   F LR+LLVLVD+  H   +RELT++ ++N +TL+CA    EAARY+ET+++Y+ K P+ I+ER+ +DY S+L   L+ +  +N+TD+ TL+ TFGS ++I  AS +EL   PG GERKV RL +A  QPF  D
Sbjct:  203 KSKAALVVKSSQRGNPLLQFIRNVPYEYG-EVVPDFVVGATSCVLFLSIRYHRLHPEYIFSRISSLANQFVLRVLLVLVDVDTHQHAIRELTRVAMVNDLTLVCAWSNEEAARYIETYKAYENKAPDAIKERVDNDYLSKLTDGLTQIPSINKTDIVTLSSTFGSLKNIMDASADELGLLPGFGERKVKRLLEAFDQPFAID 403          
BLAST of Gcaud7412.t1 vs. uniprot
Match: UPI000CE1FCD7 (DNA excision repair protein ERCC-1-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1FCD7)

HSP 1 Score: 198 bits (503), Expect = 1.400e-58
Identity = 105/220 (47.73%), Postives = 148/220 (67.27%), Query Frame = 0
Query:   30 PKRLRSEANSSNIAAALAHARSKVALLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPFK 249
            P    + A +S ++ +LA  +S+ A+LV  +Q  NP+L+HIR+VR     +I  D++ G ++CALYLSL++H LHP+Y+Y R+R L  +FKLR++L  VD+ D +  L E+TK  L++  TL+CA    E  RYLET + Y+ K  ++IQ ++  DY SRL  AL++VR VN+TDV TL  TFGS   I  AS E+L +CPGIGERKV RLY   H+PFK
Sbjct:   21 PASAAAHATASPLSTSLA-TQSRNAILVSHRQKGNPLLKHIRNVRWA-FADIVCDYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVAKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHALTTVRHVNKTDVVTLGTTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 238          
BLAST of Gcaud7412.t1 vs. uniprot
Match: A0A061H1X4_9BASI (Uncharacterized protein n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A061H1X4_9BASI)

HSP 1 Score: 199 bits (507), Expect = 2.110e-58
Identity = 97/195 (49.74%), Postives = 139/195 (71.28%), Query Frame = 0
Query:   55 LLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPFK 249
            +LV++ Q  NP+L+HIR+V  E   +I  D+  G  +C L+LSL++H+LHPEYI+ R++ L   + LR+LLV+ D+ DH   +RELTK+ LIN +T++ A    EA RY+ET++S++ K P++I+ER+ DDY S++ + L+SVRGVN+TDV TL  TFGS R IS+A+ EEL  CPG GE K  RL    HQPF+
Sbjct:   80 VLVNSCQRGNPVLQHIRNVGWEYG-DIVPDYQVGVASCVLFLSLRYHRLHPEYIHTRIQKLQQMYTLRVLLVMCDVNDHQTAIRELTKVALINSLTMMVAWSAEEAGRYIETYKSFEHKPPDVIKERVNDDYMSQIASVLTSVRGVNKTDVVTLVSTFGSLRRISTATVEELAMCPGFGELKAKRLRDVFHQPFR 273          
BLAST of Gcaud7412.t1 vs. uniprot
Match: A0A7J7D2M4_TRIWF (DNA excision repair protein ERCC-1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D2M4_TRIWF)

HSP 1 Score: 199 bits (506), Expect = 3.130e-58
Identity = 106/222 (47.75%), Postives = 149/222 (67.12%), Query Frame = 0
Query:   28 NPPKRLRSEANSSNIAAALAHARSKVALLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPFK 249
            N P  + S A +S  A A ++ +S+ A+LV  +Q  NP+L+HIR+ R     +I  D++ G ++CALYLSL++H LHP+Y+Y R+R L  +FKLR++L  VD+ D    L E+TK  L++  TL+CA    E  RYLET + Y+ K  +LIQ ++  DY SRL+ AL+++R VN+TDV TL  TFGS  +I  AS E+L +CPGIGERKV RLY   H+PFK
Sbjct:   81 NEPSDVPSSAPASTSAVASSN-QSRNAILVSHRQKGNPLLKHIRNARWA-FADIVCDYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRIVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYQSRLNHALTTIRHVNKTDVITLGSTFGSLSNIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 300          
BLAST of Gcaud7412.t1 vs. uniprot
Match: A0A397ULQ2_9GLOM (Restriction endonuclease type II-like protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397ULQ2_9GLOM)

HSP 1 Score: 198 bits (503), Expect = 3.350e-58
Identity = 96/216 (44.44%), Postives = 148/216 (68.52%), Query Frame = 0
Query:   33 LRSEANSSNIAAALAHARSKVALLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQFHKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMTLICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGVNRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPF 248
            L S+  S++  ++   + S   +LV+  Q  NP+L+ IR+V  E +  I  D++ G TTCAL+LSL++H+LHPEYI+ R+  +   + LR+LL+LVDI  H   +RELTK+C++N  T+I A  Q EA RYLET++ ++ K PE+I E++ +DY ++L   L+ +R VN+TDV TL+ +FGS + I +AS +EL  CPG+GE+K+ R+ +A  QPF
Sbjct:  135 LLSKRGSTSSTSSSTRSISSNTILVNGCQRGNPILQFIRNVPWEYS-EIVPDYLLGQTTCALFLSLKYHRLHPEYIFNRMEKIAHQYILRILLILVDIESHQESIRELTKLCIVNNFTIILAWSQEEAGRYLETYKMFEYKSPEMIMEKVENDYLAKLTHCLTQIRSVNKTDVVTLSSSFGSLKRIMNASSDELAMCPGLGEQKIKRIKEAFEQPF 349          
The following BLAST results are available for this feature:
BLAST of Gcaud7412.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IH71_9FLOR1.270e-12670.61DNA excision repair protein ERCC-1 n=1 Tax=Gracila... [more]
R7QRG6_CHOCR3.970e-9363.13Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1DCF543.430e-8063.98DNA excision repair protein ERCC-1-like n=1 Tax=Me... [more]
A0A0L0HJX7_SPIPD2.640e-6551.67DNA repair protein rad10 n=1 Tax=Spizellomyces pun... [more]
A0A1Y2GKT9_9FUNG7.430e-6349.50Restriction endonuclease type II-like protein n=1 ... [more]
A0A197JR51_9FUNG1.590e-5947.52Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
UPI000CE1FCD71.400e-5847.73DNA excision repair protein ERCC-1-like n=1 Tax=Qu... [more]
A0A061H1X4_9BASI2.110e-5849.74Uncharacterized protein n=2 Tax=Pseudozyma floccul... [more]
A0A7J7D2M4_TRIWF3.130e-5847.75DNA excision repair protein ERCC-1 n=1 Tax=Tripter... [more]
A0A397ULQ2_9GLOM3.350e-5844.44Restriction endonuclease type II-like protein n=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004579ERCC1/RAD10/SWI10 familyTIGRFAMTIGR00597TIGR00597coord: 55..165
e-value: 2.1E-34
score: 115.8
IPR004579ERCC1/RAD10/SWI10 familyPFAMPF03834Rad10coord: 55..167
e-value: 3.1E-38
score: 130.2
IPR004579ERCC1/RAD10/SWI10 familyPANTHERPTHR12749EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1coord: 17..253
NoneNo IPR availablePFAMPF14520HHH_5coord: 194..244
e-value: 2.6E-7
score: 31.1
NoneNo IPR availableGENE3D1.10.150.20coord: 170..257
e-value: 3.7E-27
score: 95.8
NoneNo IPR availableGENE3D3.40.50.10130coord: 54..169
e-value: 2.1E-40
score: 139.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 55..180
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 178..248

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_10_length_87931_cov_4.732901contigNODE_10_length_87931_cov_4.732901:635..1429 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7412.t1Gcaud7412.t1Gracilaria caudata M_176_S67 malemRNANODE_10_length_87931_cov_4.732901 635..1429 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7412.t1 ID=Gcaud7412.t1|Name=Gcaud7412.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=265bp
MSETPFKRSATHGADENSTKQWNSALLNPPKRLRSEANSSNIAAALAHAR
SKVALLVHTKQLANPMLRHIRHVRKEPNYNIAADFVCGPTTCALYLSLQF
HKLHPEYIYKRVRTLGTHFKLRLLLVLVDIADHSACLRELTKMCLINQMT
LICAGCQREAARYLETFRSYDGKGPELIQERIADDYSSRLHAALSSVRGV
NRTDVTTLAFTFGSFRDISSASREELRQCPGIGERKVARLYQALHQPFKG
DWQEIEETPDEDVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004579ERCC1/RAD10/SWI10
IPR011335Restrct_endonuc-II-like
IPR010994RuvA_2-like