Gcaud7444.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7444.t1
Unique Name	Gcaud7444.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_10_length_87931_cov_4.732901	contig	NODE_10_length_87931_cov_4.732901:86717..87838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1227349.C170_05348
Preferred name	mgtC3
PFAMs	MgtC
Max annot lvl	91061\|Bacilli
KEGG ko	ko:K07507
KEGG TC	9.B.20
Evalue	2.12e-19
EggNOG OGs	COG1285@1\|root,COG1285@2\|Bacteria,1V409@1239\|Firmicutes,4HC2G@91061\|Bacilli,26R4Z@186822\|Paenibacillaceae
Description	MgtC SapB transporter
COG category	S
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7444	Gcaud7444	Gracilaria caudata M_176_S67 male	gene	NODE_10_length_87931_cov_4.732901 86717..87838 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7444.t1.start1	Gcaud7444.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_10_length_87931_cov_4.732901 86717..86719 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7444.t1.CDS1	Gcaud7444.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_10_length_87931_cov_4.732901 86717..87838 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7444.t1.exon1	Gcaud7444.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_10_length_87931_cov_4.732901 86717..87838 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7444.t1.stop1	Gcaud7444.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_10_length_87931_cov_4.732901 87836..87838 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7444.t1	Gcaud7444.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_10_length_87931_cov_4.732901 86717..87838 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_10_length_87931_cov_4.732901:86717..87838+
coding sequence from alignment at NODE_10_length_87931_cov_4.732901:86717..87838+

mRNA sequence

>Gcaud7444.t1 ID=Gcaud7444.t1|Name=Gcaud7444.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=374bp
MVSMRVTNGATYGFGIPPISIAPQLILNIRQTTTATLAAIALAVSKSHKS
VAWRVYQAQAPIQSCITRTTRPRHSCICTAPVVVFDKDYQMPMFSTWNTS
SEGEQTQEVPPENKLQQVRFPKPLRPHNVLQRGSSLSSTRNLISELRILA
RLLVALVVGGVIGMERRAANSLAGVRTFSLVSLGAALFMSTALIAFPNSD
PARVAAAISSSVGFLGAGAMHKNAKHSKGLTTASSVWLAAALGVAAASGM
FLLSFTGAISTVLIARYARFDSSLQLIRGDPTAVFSKREDEEDEEDEEDE
EDEEEEEEEEEERDGDGQLFDSRSNGSVRHFDVLEASSSTDFDARSQRGR
QADSDRDSGGGGDGGDAKDAKED*

spliced messenger RNA

>Gcaud7444.t1 ID=Gcaud7444.t1|Name=Gcaud7444.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:86717..87838+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCGATGCGAGTCACGAATGGTGCTACTTACGGGTTCGGAATACC
TCCCATCTCAATCGCACCGCAGCTGATCCTGAACATTCGACAGACAACCA
CGGCCACGTTGGCCGCAATCGCTCTAGCCGTCAGCAAATCTCACAAATCC
GTGGCATGGAGAGTATATCAAGCGCAAGCACCCATTCAAAGCTGTATCAC
ACGCACCACAAGACCGCGACATAGCTGCATCTGCACCGCACCCGTAGTCG
TGTTCGACAAAGACTACCAAATGCCAATGTTTTCAACATGGAACACATCA
TCCGAAGGCGAGCAGACCCAAGAAGTGCCGCCGGAAAACAAATTGCAACA
GGTGAGATTTCCAAAACCACTTCGACCTCATAACGTTCTACAACGAGGTT
CTTCACTCTCATCGACGCGAAACCTGATAAGCGAGCTTCGAATCCTGGCC
AGATTGCTGGTGGCGCTGGTAGTAGGCGGTGTGATCGGCATGGAAAGAAG
GGCAGCAAACAGTCTAGCGGGCGTGAGAACGTTCAGTCTGGTGAGTCTTG
GGGCGGCTTTGTTCATGTCTACTGCGCTTATAGCATTTCCTAATTCGGAT
CCCGCTCGAGTTGCAGCGGCGATTTCGTCGAGCGTTGGGTTTCTTGGCGC
CGGTGCTATGCACAAGAATGCAAAGCATTCTAAAGGTCTTACTACGGCTT
CTTCAGTATGGCTCGCGGCGGCTCTTGGCGTTGCGGCGGCGTCTGGAATG
TTTTTGTTGTCGTTTACGGGTGCGATTTCGACCGTGTTGATTGCGCGGTA
CGCGAGGTTTGACTCTTCACTTCAGCTGATCCGGGGAGATCCTACCGCCG
TTTTCAGTAAACGAGAAgacgaggaggacgaggaggacgaggaggacgag
gaggacgaggaggaGGAAGAGGAGGAAGAGGAGGAACGGGATGGGGACGG
ACAGCTGTTTGATTCAAGAAGCAACGGGAGCGTGCGTCACTTTGACGTGT
TGGAGGCGAGCTCGAGCACAGACTTTGACGCTCGTTCGCAGCGCGGACGG
CAAGCAGACAGCGACAGAGACAgcggcggcggcggcgatggcggcgacgC
GAAGGACGCGAAGGAGGACTGA

protein sequence of Gcaud7444.t1

>Gcaud7444.t1 ID=Gcaud7444.t1|Name=Gcaud7444.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=374bp
MVSMRVTNGATYGFGIPPISIAPQLILNIRQTTTATLAAIALAVSKSHKS
VAWRVYQAQAPIQSCITRTTRPRHSCICTAPVVVFDKDYQMPMFSTWNTS
SEGEQTQEVPPENKLQQVRFPKPLRPHNVLQRGSSLSSTRNLISELRILA
RLLVALVVGGVIGMERRAANSLAGVRTFSLVSLGAALFMSTALIAFPNSD
PARVAAAISSSVGFLGAGAMHKNAKHSKGLTTASSVWLAAALGVAAASGM
FLLSFTGAISTVLIARYARFDSSLQLIRGDPTAVFSKREDEEDEEDEEDE
EDEEEEEEEEEERDGDGQLFDSRSNGSVRHFDVLEASSSTDFDARSQRGR
QADSDRDSGGGGDGGDAKDAKED*

mRNA from alignment at NODE_10_length_87931_cov_4.732901:86717..87838+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7444.t1 ID=Gcaud7444.t1|Name=Gcaud7444.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:86717..87838+ (Gracilaria caudata M_176_S67 male)
ATGGTTTCGATGCGAGTCACGAATGGTGCTACTTACGGGTTCGGAATACC
TCCCATCTCAATCGCACCGCAGCTGATCCTGAACATTCGACAGACAACCA
CGGCCACGTTGGCCGCAATCGCTCTAGCCGTCAGCAAATCTCACAAATCC
GTGGCATGGAGAGTATATCAAGCGCAAGCACCCATTCAAAGCTGTATCAC
ACGCACCACAAGACCGCGACATAGCTGCATCTGCACCGCACCCGTAGTCG
TGTTCGACAAAGACTACCAAATGCCAATGTTTTCAACATGGAACACATCA
TCCGAAGGCGAGCAGACCCAAGAAGTGCCGCCGGAAAACAAATTGCAACA
GGTGAGATTTCCAAAACCACTTCGACCTCATAACGTTCTACAACGAGGTT
CTTCACTCTCATCGACGCGAAACCTGATAAGCGAGCTTCGAATCCTGGCC
AGATTGCTGGTGGCGCTGGTAGTAGGCGGTGTGATCGGCATGGAAAGAAG
GGCAGCAAACAGTCTAGCGGGCGTGAGAACGTTCAGTCTGGTGAGTCTTG
GGGCGGCTTTGTTCATGTCTACTGCGCTTATAGCATTTCCTAATTCGGAT
CCCGCTCGAGTTGCAGCGGCGATTTCGTCGAGCGTTGGGTTTCTTGGCGC
CGGTGCTATGCACAAGAATGCAAAGCATTCTAAAGGTCTTACTACGGCTT
CTTCAGTATGGCTCGCGGCGGCTCTTGGCGTTGCGGCGGCGTCTGGAATG
TTTTTGTTGTCGTTTACGGGTGCGATTTCGACCGTGTTGATTGCGCGGTA
CGCGAGGTTTGACTCTTCACTTCAGCTGATCCGGGGAGATCCTACCGCCG
TTTTCAGTAAACGAGAAgacgaggaggacgaggaggacgaggaggacgag
gaggacgaggaggaGGAAGAGGAGGAAGAGGAGGAACGGGATGGGGACGG
ACAGCTGTTTGATTCAAGAAGCAACGGGAGCGTGCGTCACTTTGACGTGT
TGGAGGCGAGCTCGAGCACAGACTTTGACGCTCGTTCGCAGCGCGGACGG
CAAGCAGACAGCGACAGAGACAgcggcggcggcggcgatggcggcgacgC
GAAGGACGCGAAGGAGGACTGA

Coding sequence (CDS) from alignment at NODE_10_length_87931_cov_4.732901:86717..87838+

>Gcaud7444.t1 ID=Gcaud7444.t1|Name=Gcaud7444.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1122bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:86717..87838+ (Gracilaria caudata M_176_S67 male)
ATGGTTTCGATGCGAGTCACGAATGGTGCTACTTACGGGTTCGGAATACC
TCCCATCTCAATCGCACCGCAGCTGATCCTGAACATTCGACAGACAACCA
CGGCCACGTTGGCCGCAATCGCTCTAGCCGTCAGCAAATCTCACAAATCC
GTGGCATGGAGAGTATATCAAGCGCAAGCACCCATTCAAAGCTGTATCAC
ACGCACCACAAGACCGCGACATAGCTGCATCTGCACCGCACCCGTAGTCG
TGTTCGACAAAGACTACCAAATGCCAATGTTTTCAACATGGAACACATCA
TCCGAAGGCGAGCAGACCCAAGAAGTGCCGCCGGAAAACAAATTGCAACA
GGTGAGATTTCCAAAACCACTTCGACCTCATAACGTTCTACAACGAGGTT
CTTCACTCTCATCGACGCGAAACCTGATAAGCGAGCTTCGAATCCTGGCC
AGATTGCTGGTGGCGCTGGTAGTAGGCGGTGTGATCGGCATGGAAAGAAG
GGCAGCAAACAGTCTAGCGGGCGTGAGAACGTTCAGTCTGGTGAGTCTTG
GGGCGGCTTTGTTCATGTCTACTGCGCTTATAGCATTTCCTAATTCGGAT
CCCGCTCGAGTTGCAGCGGCGATTTCGTCGAGCGTTGGGTTTCTTGGCGC
CGGTGCTATGCACAAGAATGCAAAGCATTCTAAAGGTCTTACTACGGCTT
CTTCAGTATGGCTCGCGGCGGCTCTTGGCGTTGCGGCGGCGTCTGGAATG
TTTTTGTTGTCGTTTACGGGTGCGATTTCGACCGTGTTGATTGCGCGGTA
CGCGAGGTTTGACTCTTCACTTCAGCTGATCCGGGGAGATCCTACCGCCG
TTTTCAGTAAACGAGAAgacgaggaggacgaggaggacgaggaggacgag
gaggacgaggaggaGGAAGAGGAGGAAGAGGAGGAACGGGATGGGGACGG
ACAGCTGTTTGATTCAAGAAGCAACGGGAGCGTGCGTCACTTTGACGTGT
TGGAGGCGAGCTCGAGCACAGACTTTGACGCTCGTTCGCAGCGCGGACGG
CAAGCAGACAGCGACAGAGACAgcggcggcggcggcgatggcggcgacgC
GAAGGACGCGAAGGAGGACTGA