Gcaud2377.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2377.t1
Unique Name	Gcaud2377.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	706

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3530_length_3313_cov_5.081006	contig	NODE_3530_length_3313_cov_5.081006:1198..3313 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2377	Gcaud2377	Gracilaria caudata M_176_S67 male	gene	NODE_3530_length_3313_cov_5.081006 1198..3313 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2377.t1.start1	Gcaud2377.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3530_length_3313_cov_5.081006 1198..1200 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2377.t1.CDS1	Gcaud2377.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3530_length_3313_cov_5.081006 1198..3313 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2377.t1.exon1	Gcaud2377.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3530_length_3313_cov_5.081006 1198..3313 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2377.t1	Gcaud2377.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3530_length_3313_cov_5.081006 1198..3313 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3530_length_3313_cov_5.081006:1198..3313+
coding sequence from alignment at NODE_3530_length_3313_cov_5.081006:1198..3313+

mRNA sequence

>Gcaud2377.t1 ID=Gcaud2377.t1|Name=Gcaud2377.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=706bp
MERKVAEFIASVDPREQNSRPIAPNQLLFSQDSTNNLVSVLHQLSTSEHD
LSNFQLSAAKPQQQLRLVPLSAEQEQLISEVWGAVRQAVFHFLSSTPSQR
ISKDFQDEHNPTIRGRLIKTFSDKIISNLRASRPSNSPNIVREFSILICD
QEFEAKLEHLVQNVVDALFSCDNKTEHVRNSDKLERFHWRIQCWFLLRDM
LDSFLQPFWSRNIYISHHLEVYKMLDDLLCKQEAFSRVIMDIRTTHTKFL
ERMRQASVIMAYNYEKKEYRFYETQISHKEACAIQSFFYFLRLCGSKTID
NKSAIAYHLSQLRRFHNNLRHGYVMRKLKQLQKDVCDEDRPSLDFEGLLS
FAQKMSRYIRAERLISLHAFGNQNMYGYSGLVFVEDLEVVNHVGRYLSKD
ALITLRVEDKTHSLYGAFDYFRYLEGDRGIHFLQKLLREHCHNLFLNVKR
KRYGRYGAPIYSFEKYLTFFENDLPPMKHFRNSLCETLWDALGQRYSADD
PLQFLTKVFLELNNRAGTYARLPRISKATKSLAWIAEILLGAFERNQFIR
HARQYHLERYLQGEELSTAQIAEFHNTFDSVIGKPLPYFEKLEYNSKKSI
GEVCEGPDEHANTVPLADEMTESASRGKEWTTTDDEDRFQPYLRLHNVDG
SLNFGPATDVLHLNSIVAIDAQTIEEKNHHHFLELPRDISMANKYTASYY
RSLYPX

spliced messenger RNA

>Gcaud2377.t1 ID=Gcaud2377.t1|Name=Gcaud2377.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2116bp|location=Sequence derived from alignment at NODE_3530_length_3313_cov_5.081006:1198..3313+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCAAAGTGGCGGAATTCATTGCTTCAGTAGATCCCAGAGAACA
AAATTCGCGGCCAATTGCCCCAAACCAGCTGCTTTTCTCCCAAGATTCAA
CGAACAATTTGGTCTCAGTGCTTCACCAGCTGTCAACTTCTGAGCATGAT
CTATCCAACTTTCAGCTATCCGCTGCAAAACCTCAACAGCAACTTCGTCT
GGTGCCTCTGAGCGCTGAACAAGAGCAACTTATCTCTGAAGTTTGGGGTG
CTGTGAGGCAGGCCGTTTTCCATTTTCTTTCCTCAACCCCTTCTCAAAGA
ATTTCCAAAGACTTCCAAGATGAACATAACCCTACGATCCGTGGTCGCCT
CATTAAAACCTTTTCCGATAAAATTATATCCAACCTTCGAGCCTCCAGGC
CGAGCAACTCTCCCAATATCGTTCGGGAGTTTTCTATTCTCATATGCGAT
CAAGAATTTGAGGCGAAGCTAGAACATCTGGTCCAAAACGTGGTTGACGC
CCTCTTTTCATGTGATAACAAGACTGAGCATGTCAGAAATAGTGACAAGC
TAGAGAGATTTCATTGGCGAATCCAATGTTGGTTCCTGTTAAGGGATATG
CTTGATTCATTCTTGCAGCCATTCTGGTCGAGAAATATTTATATTTCTCA
TCATCTGGAAGTCTACAAAATGTTGGACGACTTACTTTGCAAACAAGAAG
CCTTTTCTCGAGTCATTATGGATATCCGCACAACGCATACAAAGTTTTTG
GAACGCATGAGGCAGGCAAGTGTGATTATGGCATATAATTACGAAAAAAA
AGAATATCGATTCTATGAAACCCAAATTAGCCACAAAGAAGCTTGTGCAA
TACAGTCATTCTTCTATTTCTTGCGGTTATGTGGATCTAAAACGATTGAC
AACAAATCTGCAATTGCTTACCACCTGAGCCAGCTTCGTCGATTCCACAA
CAACTTACGTCATGGTTACGTCATGAGAAAGCTTAAGCAACTACAAAAAG
ATGTGTGCGACGAAGATAGACCTTCACTGGACTTTGAGGGACTTTTAAGT
TTTGCCCAAAAAATGTCTCGCTACATACGAGCGGAGAGACTTATCTCACT
TCATGCATTTGGGAATCAGAACATGTACGGATACAGTGGTTTGGTGTTTG
TTGAAGACCTCGAAGTGGTGAACCATGTAGGCCGTTACCTTTCCAAAGAT
GCGCTGATAACACTGAGGGTTGAAGATAAAACGCATTCCCTGTACGGAGC
GTTTGATTATTTCCGATATTTGGAAGGCGATCGGGGAATACATTTCTTGC
AAAAGTTGTTGCGAGAGCATTGTCATAACCTCTTCCTCAACGTAAAGCGC
AAGAGGTATGGGAGGTATGGGGCACCAATCTACTCGTTTGAGAAGTATTT
GACATTCTTTGAAAATGATCTGCCTCCTATGAAACATTTTCGCAACTCTC
TCTGTGAGACATTGTGGGACGCATTGGGGCAAAGATACTCCGCTGATGAT
CCTCTCCAATTCTTGACCAAAGTGTTCCTAGAACTGAATAATCGAGCAGG
GACCTATGCAAGGCTCCCTAGGATTTCCAAGGCTACGAAATCATTGGCAT
GGATAGCAGAAATTTTGTTGGGGGCTTTCGAGAGGAATCAATTCATAAGA
CATGCCCGCCAATATCATTTGGAGCGCTATTTGCAAGGTGAGGAACTTTC
GACAGCACAAATCGCAGAGTTTCACAATACCTTCGACTCTGTCATTGGAA
AACCTCTCCCGTACTTCGAGAAGCTTGAGTACAATTCCAAGAAGAGCATT
GGCGAAGTCTGTGAAGGGCCTGATGAGCACGCAAACACCGTTCCTTTAGC
TGATGAAATGACGGAGAGTGCTTCAAGGGGAAAAGAGTGGACGACAACTG
ATGACGAAGACCGTTTTCAGCCTTACTTACGGCTTCACAACGTTGATGGG
TCTCTCAATTTTGGACCTGCAACTGATGTCCTCCATCTCAATTCTATCGT
CGCCATCGATGCCCAAACTATAGAAGAAAAGAACCATCATCACTTTCTCG
AACTCCCACGCGACATTTCTATGGCTAACAAATACACCGCATCGTATTAC
AGAAGTCTTTATCCTA

protein sequence of Gcaud2377.t1

>Gcaud2377.t1 ID=Gcaud2377.t1|Name=Gcaud2377.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=706bp
MERKVAEFIASVDPREQNSRPIAPNQLLFSQDSTNNLVSVLHQLSTSEHD
LSNFQLSAAKPQQQLRLVPLSAEQEQLISEVWGAVRQAVFHFLSSTPSQR
ISKDFQDEHNPTIRGRLIKTFSDKIISNLRASRPSNSPNIVREFSILICD
QEFEAKLEHLVQNVVDALFSCDNKTEHVRNSDKLERFHWRIQCWFLLRDM
LDSFLQPFWSRNIYISHHLEVYKMLDDLLCKQEAFSRVIMDIRTTHTKFL
ERMRQASVIMAYNYEKKEYRFYETQISHKEACAIQSFFYFLRLCGSKTID
NKSAIAYHLSQLRRFHNNLRHGYVMRKLKQLQKDVCDEDRPSLDFEGLLS
FAQKMSRYIRAERLISLHAFGNQNMYGYSGLVFVEDLEVVNHVGRYLSKD
ALITLRVEDKTHSLYGAFDYFRYLEGDRGIHFLQKLLREHCHNLFLNVKR
KRYGRYGAPIYSFEKYLTFFENDLPPMKHFRNSLCETLWDALGQRYSADD
PLQFLTKVFLELNNRAGTYARLPRISKATKSLAWIAEILLGAFERNQFIR
HARQYHLERYLQGEELSTAQIAEFHNTFDSVIGKPLPYFEKLEYNSKKSI
GEVCEGPDEHANTVPLADEMTESASRGKEWTTTDDEDRFQPYLRLHNVDG
SLNFGPATDVLHLNSIVAIDAQTIEEKNHHHFLELPRDISMANKYTASYY
RSLYPX

mRNA from alignment at NODE_3530_length_3313_cov_5.081006:1198..3313+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2377.t1 ID=Gcaud2377.t1|Name=Gcaud2377.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2116bp|location=Sequence derived from alignment at NODE_3530_length_3313_cov_5.081006:1198..3313+ (Gracilaria caudata M_176_S67 male)
ATGGAGCGCAAAGTGGCGGAATTCATTGCTTCAGTAGATCCCAGAGAACA
AAATTCGCGGCCAATTGCCCCAAACCAGCTGCTTTTCTCCCAAGATTCAA
CGAACAATTTGGTCTCAGTGCTTCACCAGCTGTCAACTTCTGAGCATGAT
CTATCCAACTTTCAGCTATCCGCTGCAAAACCTCAACAGCAACTTCGTCT
GGTGCCTCTGAGCGCTGAACAAGAGCAACTTATCTCTGAAGTTTGGGGTG
CTGTGAGGCAGGCCGTTTTCCATTTTCTTTCCTCAACCCCTTCTCAAAGA
ATTTCCAAAGACTTCCAAGATGAACATAACCCTACGATCCGTGGTCGCCT
CATTAAAACCTTTTCCGATAAAATTATATCCAACCTTCGAGCCTCCAGGC
CGAGCAACTCTCCCAATATCGTTCGGGAGTTTTCTATTCTCATATGCGAT
CAAGAATTTGAGGCGAAGCTAGAACATCTGGTCCAAAACGTGGTTGACGC
CCTCTTTTCATGTGATAACAAGACTGAGCATGTCAGAAATAGTGACAAGC
TAGAGAGATTTCATTGGCGAATCCAATGTTGGTTCCTGTTAAGGGATATG
CTTGATTCATTCTTGCAGCCATTCTGGTCGAGAAATATTTATATTTCTCA
TCATCTGGAAGTCTACAAAATGTTGGACGACTTACTTTGCAAACAAGAAG
CCTTTTCTCGAGTCATTATGGATATCCGCACAACGCATACAAAGTTTTTG
GAACGCATGAGGCAGGCAAGTGTGATTATGGCATATAATTACGAAAAAAA
AGAATATCGATTCTATGAAACCCAAATTAGCCACAAAGAAGCTTGTGCAA
TACAGTCATTCTTCTATTTCTTGCGGTTATGTGGATCTAAAACGATTGAC
AACAAATCTGCAATTGCTTACCACCTGAGCCAGCTTCGTCGATTCCACAA
CAACTTACGTCATGGTTACGTCATGAGAAAGCTTAAGCAACTACAAAAAG
ATGTGTGCGACGAAGATAGACCTTCACTGGACTTTGAGGGACTTTTAAGT
TTTGCCCAAAAAATGTCTCGCTACATACGAGCGGAGAGACTTATCTCACT
TCATGCATTTGGGAATCAGAACATGTACGGATACAGTGGTTTGGTGTTTG
TTGAAGACCTCGAAGTGGTGAACCATGTAGGCCGTTACCTTTCCAAAGAT
GCGCTGATAACACTGAGGGTTGAAGATAAAACGCATTCCCTGTACGGAGC
GTTTGATTATTTCCGATATTTGGAAGGCGATCGGGGAATACATTTCTTGC
AAAAGTTGTTGCGAGAGCATTGTCATAACCTCTTCCTCAACGTAAAGCGC
AAGAGGTATGGGAGGTATGGGGCACCAATCTACTCGTTTGAGAAGTATTT
GACATTCTTTGAAAATGATCTGCCTCCTATGAAACATTTTCGCAACTCTC
TCTGTGAGACATTGTGGGACGCATTGGGGCAAAGATACTCCGCTGATGAT
CCTCTCCAATTCTTGACCAAAGTGTTCCTAGAACTGAATAATCGAGCAGG
GACCTATGCAAGGCTCCCTAGGATTTCCAAGGCTACGAAATCATTGGCAT
GGATAGCAGAAATTTTGTTGGGGGCTTTCGAGAGGAATCAATTCATAAGA
CATGCCCGCCAATATCATTTGGAGCGCTATTTGCAAGGTGAGGAACTTTC
GACAGCACAAATCGCAGAGTTTCACAATACCTTCGACTCTGTCATTGGAA
AACCTCTCCCGTACTTCGAGAAGCTTGAGTACAATTCCAAGAAGAGCATT
GGCGAAGTCTGTGAAGGGCCTGATGAGCACGCAAACACCGTTCCTTTAGC
TGATGAAATGACGGAGAGTGCTTCAAGGGGAAAAGAGTGGACGACAACTG
ATGACGAAGACCGTTTTCAGCCTTACTTACGGCTTCACAACGTTGATGGG
TCTCTCAATTTTGGACCTGCAACTGATGTCCTCCATCTCAATTCTATCGT
CGCCATCGATGCCCAAACTATAGAAGAAAAGAACCATCATCACTTTCTCG
AACTCCCACGCGACATTTCTATGGCTAACAAATACACCGCATCGTATTAC
AGAAGTCTTTATCCTA

Coding sequence (CDS) from alignment at NODE_3530_length_3313_cov_5.081006:1198..3313+

>Gcaud2377.t1 ID=Gcaud2377.t1|Name=Gcaud2377.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2116bp|location=Sequence derived from alignment at NODE_3530_length_3313_cov_5.081006:1198..3313+ (Gracilaria caudata M_176_S67 male)
ATGGAGCGCAAAGTGGCGGAATTCATTGCTTCAGTAGATCCCAGAGAACA
AAATTCGCGGCCAATTGCCCCAAACCAGCTGCTTTTCTCCCAAGATTCAA
CGAACAATTTGGTCTCAGTGCTTCACCAGCTGTCAACTTCTGAGCATGAT
CTATCCAACTTTCAGCTATCCGCTGCAAAACCTCAACAGCAACTTCGTCT
GGTGCCTCTGAGCGCTGAACAAGAGCAACTTATCTCTGAAGTTTGGGGTG
CTGTGAGGCAGGCCGTTTTCCATTTTCTTTCCTCAACCCCTTCTCAAAGA
ATTTCCAAAGACTTCCAAGATGAACATAACCCTACGATCCGTGGTCGCCT
CATTAAAACCTTTTCCGATAAAATTATATCCAACCTTCGAGCCTCCAGGC
CGAGCAACTCTCCCAATATCGTTCGGGAGTTTTCTATTCTCATATGCGAT
CAAGAATTTGAGGCGAAGCTAGAACATCTGGTCCAAAACGTGGTTGACGC
CCTCTTTTCATGTGATAACAAGACTGAGCATGTCAGAAATAGTGACAAGC
TAGAGAGATTTCATTGGCGAATCCAATGTTGGTTCCTGTTAAGGGATATG
CTTGATTCATTCTTGCAGCCATTCTGGTCGAGAAATATTTATATTTCTCA
TCATCTGGAAGTCTACAAAATGTTGGACGACTTACTTTGCAAACAAGAAG
CCTTTTCTCGAGTCATTATGGATATCCGCACAACGCATACAAAGTTTTTG
GAACGCATGAGGCAGGCAAGTGTGATTATGGCATATAATTACGAAAAAAA
AGAATATCGATTCTATGAAACCCAAATTAGCCACAAAGAAGCTTGTGCAA
TACAGTCATTCTTCTATTTCTTGCGGTTATGTGGATCTAAAACGATTGAC
AACAAATCTGCAATTGCTTACCACCTGAGCCAGCTTCGTCGATTCCACAA
CAACTTACGTCATGGTTACGTCATGAGAAAGCTTAAGCAACTACAAAAAG
ATGTGTGCGACGAAGATAGACCTTCACTGGACTTTGAGGGACTTTTAAGT
TTTGCCCAAAAAATGTCTCGCTACATACGAGCGGAGAGACTTATCTCACT
TCATGCATTTGGGAATCAGAACATGTACGGATACAGTGGTTTGGTGTTTG
TTGAAGACCTCGAAGTGGTGAACCATGTAGGCCGTTACCTTTCCAAAGAT
GCGCTGATAACACTGAGGGTTGAAGATAAAACGCATTCCCTGTACGGAGC
GTTTGATTATTTCCGATATTTGGAAGGCGATCGGGGAATACATTTCTTGC
AAAAGTTGTTGCGAGAGCATTGTCATAACCTCTTCCTCAACGTAAAGCGC
AAGAGGTATGGGAGGTATGGGGCACCAATCTACTCGTTTGAGAAGTATTT
GACATTCTTTGAAAATGATCTGCCTCCTATGAAACATTTTCGCAACTCTC
TCTGTGAGACATTGTGGGACGCATTGGGGCAAAGATACTCCGCTGATGAT
CCTCTCCAATTCTTGACCAAAGTGTTCCTAGAACTGAATAATCGAGCAGG
GACCTATGCAAGGCTCCCTAGGATTTCCAAGGCTACGAAATCATTGGCAT
GGATAGCAGAAATTTTGTTGGGGGCTTTCGAGAGGAATCAATTCATAAGA
CATGCCCGCCAATATCATTTGGAGCGCTATTTGCAAGGTGAGGAACTTTC
GACAGCACAAATCGCAGAGTTTCACAATACCTTCGACTCTGTCATTGGAA
AACCTCTCCCGTACTTCGAGAAGCTTGAGTACAATTCCAAGAAGAGCATT
GGCGAAGTCTGTGAAGGGCCTGATGAGCACGCAAACACCGTTCCTTTAGC
TGATGAAATGACGGAGAGTGCTTCAAGGGGAAAAGAGTGGACGACAACTG
ATGACGAAGACCGTTTTCAGCCTTACTTACGGCTTCACAACGTTGATGGG
TCTCTCAATTTTGGACCTGCAACTGATGTCCTCCATCTCAATTCTATCGT
CGCCATCGATGCCCAAACTATAGAAGAAAAGAACCATCATCACTTTCTCG
AACTCCCACGCGACATTTCTATGGCTAACAAATACACCGCATCGTATTAC
AGAAGTCTTTATCCTA