Gcaud7435.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7435.t1
Unique Name	Gcaud7435.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_10_length_87931_cov_4.732901	contig	NODE_10_length_87931_cov_4.732901:68164..69138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_90804
Preferred name	HEMC
PFAMs	Porphobil_deam,Porphobil_deamC
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02317
KEGG ko	ko:K01749
KEGG Reaction	R00084
KEGG Pathway	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG Module	M00121
GOs	GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009451,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0071704,GO:0090304,GO:0098542,GO:1900865,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	5.33e-146
EggNOG OGs	COG0181@1\|root,KOG2892@2759\|Eukaryota
EC	2.5.1.61
Description	porphobilinogen deaminase
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7435	Gcaud7435	Gracilaria caudata M_176_S67 male	gene	NODE_10_length_87931_cov_4.732901 68164..69138 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7435.t1.start1	Gcaud7435.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_10_length_87931_cov_4.732901 68164..68166 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7435.t1.CDS1	Gcaud7435.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_10_length_87931_cov_4.732901 68164..69138 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7435.t1.exon1	Gcaud7435.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_10_length_87931_cov_4.732901 68164..69138 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7435.t1.stop1	Gcaud7435.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_10_length_87931_cov_4.732901 69136..69138 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7435.t1	Gcaud7435.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_10_length_87931_cov_4.732901 68164..69138 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_10_length_87931_cov_4.732901:68164..69138+
coding sequence from alignment at NODE_10_length_87931_cov_4.732901:68164..69138+

mRNA sequence

>Gcaud7435.t1 ID=Gcaud7435.t1|Name=Gcaud7435.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=325bp
MSVSEVQTPPEKTSSDRAVVVIGTRGSPLALAQAHETKRRLIEAFPNLAS
EGAIEIKIIQTTGDMILDKALADIGGKGLFTKEIDIAQLKGDIDIAVHSM
KDVPTWLPDGIILPCMLPREDTRDVFISNKAKSIEELPDGSVVGSASLRR
QSQILAKNPTLKVINFRGNVQTRLRKLNEGKVDATLLALAGLSRMNMTEH
ATSIISQEQMLPAVAQGAIGITCRQGDKAMLDFLAPLNHKNTKTCVDCER
AFLTKLDGSCRTPIAGQAHIDENGVLQFRGLVAKPDGSEVFETSRSGKPA
DAIAIGTDAGSELKEKMGEDFFAV*

spliced messenger RNA

>Gcaud7435.t1 ID=Gcaud7435.t1|Name=Gcaud7435.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:68164..69138+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGTGTCGGAAGTACAGACTCCACCCGAGAAAACAAGCTCAGATCG
AGCTGTCGTAGTCATCGGCACTCGTGGATCTCCGCTTGCCTTGGCACAAG
CTCATGAAACCAAACGTCGATTGATAGAAGCCTTTCCGAACTTGGCTTCG
GAGGGCGCGATTGAAATCAAAATCATTCAGACAACTGGTGACATGATTCT
CGACAAGGCTCTCGCAGACATTGGTGGAAAAGGCCTGTTTACCAAAGAAA
TCGACATTGCGCAGCTTAAAGGTGATATTGATATCGCTGTTCACTCTATG
AAGGACGTACCTACCTGGCTCCCAGATGGCATTATTCTGCCGTGTATGCT
TCCCCGCGAGGATACGCGCGACGTCTTCATTTCAAACAAAGCAAAGTCCA
TTGAAGAGCTTCCTGATGGCAGTGTAGTTGGGTCTGCCTCCCTGCGACGC
CAATCTCAGATTTTGGCAAAGAATCCTACCCTAAAGGTCATCAACTTCCG
TGGCAACGTCCAAACAAGACTGCGAAAGCTGAATGAGGGCAAGGTGGATG
CTACTTTGCTAGCTCTTGCAGGCCTTTCTCGTATGAATATGACCGAGCAC
GCCACCTCCATCATTTCACAGGAACAAATGTTACCAGCTGTTGCGCAGGG
TGCTATTGGCATAACATGTAGACAAGGTGACAAGGCCATGCTCGACTTCC
TCGCCCCACTGAATCACAAGAACACAAAGACGTGCGTCGACTGCGAGCGG
GCGTTTTTGACAAAGTTGGACGGTTCCTGCCGAACCCCTATTGCTGGTCA
AGCACACATCGATGAGAATGGTGTTTTGCAGTTCCGTGGGTTAGTAGCAA
AACCGGATGGTTCCGAAGTCTTCGAAACCTCTCGATCAGGGAAACCAGCA
GATGCCATTGCAATAGGCACTGATGCTGGAAGTGAGTTGAAGGAAAAAAT
GGGTGAAGACTTCTTCGCCGTTTAG

protein sequence of Gcaud7435.t1

>Gcaud7435.t1 ID=Gcaud7435.t1|Name=Gcaud7435.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=325bp
MSVSEVQTPPEKTSSDRAVVVIGTRGSPLALAQAHETKRRLIEAFPNLAS
EGAIEIKIIQTTGDMILDKALADIGGKGLFTKEIDIAQLKGDIDIAVHSM
KDVPTWLPDGIILPCMLPREDTRDVFISNKAKSIEELPDGSVVGSASLRR
QSQILAKNPTLKVINFRGNVQTRLRKLNEGKVDATLLALAGLSRMNMTEH
ATSIISQEQMLPAVAQGAIGITCRQGDKAMLDFLAPLNHKNTKTCVDCER
AFLTKLDGSCRTPIAGQAHIDENGVLQFRGLVAKPDGSEVFETSRSGKPA
DAIAIGTDAGSELKEKMGEDFFAV*

mRNA from alignment at NODE_10_length_87931_cov_4.732901:68164..69138+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7435.t1 ID=Gcaud7435.t1|Name=Gcaud7435.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:68164..69138+ (Gracilaria caudata M_176_S67 male)
ATGAGTGTGTCGGAAGTACAGACTCCACCCGAGAAAACAAGCTCAGATCG
AGCTGTCGTAGTCATCGGCACTCGTGGATCTCCGCTTGCCTTGGCACAAG
CTCATGAAACCAAACGTCGATTGATAGAAGCCTTTCCGAACTTGGCTTCG
GAGGGCGCGATTGAAATCAAAATCATTCAGACAACTGGTGACATGATTCT
CGACAAGGCTCTCGCAGACATTGGTGGAAAAGGCCTGTTTACCAAAGAAA
TCGACATTGCGCAGCTTAAAGGTGATATTGATATCGCTGTTCACTCTATG
AAGGACGTACCTACCTGGCTCCCAGATGGCATTATTCTGCCGTGTATGCT
TCCCCGCGAGGATACGCGCGACGTCTTCATTTCAAACAAAGCAAAGTCCA
TTGAAGAGCTTCCTGATGGCAGTGTAGTTGGGTCTGCCTCCCTGCGACGC
CAATCTCAGATTTTGGCAAAGAATCCTACCCTAAAGGTCATCAACTTCCG
TGGCAACGTCCAAACAAGACTGCGAAAGCTGAATGAGGGCAAGGTGGATG
CTACTTTGCTAGCTCTTGCAGGCCTTTCTCGTATGAATATGACCGAGCAC
GCCACCTCCATCATTTCACAGGAACAAATGTTACCAGCTGTTGCGCAGGG
TGCTATTGGCATAACATGTAGACAAGGTGACAAGGCCATGCTCGACTTCC
TCGCCCCACTGAATCACAAGAACACAAAGACGTGCGTCGACTGCGAGCGG
GCGTTTTTGACAAAGTTGGACGGTTCCTGCCGAACCCCTATTGCTGGTCA
AGCACACATCGATGAGAATGGTGTTTTGCAGTTCCGTGGGTTAGTAGCAA
AACCGGATGGTTCCGAAGTCTTCGAAACCTCTCGATCAGGGAAACCAGCA
GATGCCATTGCAATAGGCACTGATGCTGGAAGTGAGTTGAAGGAAAAAAT
GGGTGAAGACTTCTTCGCCGTTTAG

Coding sequence (CDS) from alignment at NODE_10_length_87931_cov_4.732901:68164..69138+

>Gcaud7435.t1 ID=Gcaud7435.t1|Name=Gcaud7435.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=975bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:68164..69138+ (Gracilaria caudata M_176_S67 male)
ATGAGTGTGTCGGAAGTACAGACTCCACCCGAGAAAACAAGCTCAGATCG
AGCTGTCGTAGTCATCGGCACTCGTGGATCTCCGCTTGCCTTGGCACAAG
CTCATGAAACCAAACGTCGATTGATAGAAGCCTTTCCGAACTTGGCTTCG
GAGGGCGCGATTGAAATCAAAATCATTCAGACAACTGGTGACATGATTCT
CGACAAGGCTCTCGCAGACATTGGTGGAAAAGGCCTGTTTACCAAAGAAA
TCGACATTGCGCAGCTTAAAGGTGATATTGATATCGCTGTTCACTCTATG
AAGGACGTACCTACCTGGCTCCCAGATGGCATTATTCTGCCGTGTATGCT
TCCCCGCGAGGATACGCGCGACGTCTTCATTTCAAACAAAGCAAAGTCCA
TTGAAGAGCTTCCTGATGGCAGTGTAGTTGGGTCTGCCTCCCTGCGACGC
CAATCTCAGATTTTGGCAAAGAATCCTACCCTAAAGGTCATCAACTTCCG
TGGCAACGTCCAAACAAGACTGCGAAAGCTGAATGAGGGCAAGGTGGATG
CTACTTTGCTAGCTCTTGCAGGCCTTTCTCGTATGAATATGACCGAGCAC
GCCACCTCCATCATTTCACAGGAACAAATGTTACCAGCTGTTGCGCAGGG
TGCTATTGGCATAACATGTAGACAAGGTGACAAGGCCATGCTCGACTTCC
TCGCCCCACTGAATCACAAGAACACAAAGACGTGCGTCGACTGCGAGCGG
GCGTTTTTGACAAAGTTGGACGGTTCCTGCCGAACCCCTATTGCTGGTCA
AGCACACATCGATGAGAATGGTGTTTTGCAGTTCCGTGGGTTAGTAGCAA
AACCGGATGGTTCCGAAGTCTTCGAAACCTCTCGATCAGGGAAACCAGCA
GATGCCATTGCAATAGGCACTGATGCTGGAAGTGAGTTGAAGGAAAAAAT
GGGTGAAGACTTCTTCGCCGTTTAG