Gcaud2057.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2057.t1
Unique NameGcaud2057.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length801
Homology
BLAST of Gcaud2057.t1 vs. uniprot
Match: A0A2V3IN30_9FLOR (Putative pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN30_9FLOR)

HSP 1 Score: 941 bits (2431), Expect = 0.000e+0
Identity = 508/769 (66.06%), Postives = 594/769 (77.24%), Query Frame = 0
Query:   43 EWRTLTLIDGPSWVSAVPARAGVEMSRARARQLRMQGDLTAAMRVVRLAGLRFSRDERDVVECLLVLLGSPQFTAPRERLLAMVDVLRDARGDLGAAAYNVVLTACAREAARLTHNSAAKDYV-LHTASRMWTQLGRRGSHIHPRSTALMYRICGDCNNLQLARRIRDHTNDPAVPRARAASPKPQSSELATAAYILCLGKCHRAQEAEQLYFSPHLAKLRSSDRMLSALFRAYVASNAISKAESLIAMYGATFLNVQSCNAFVKQCAQLRLHDTAIAFVNRMARSSTTRFPSPNARTYNLLLRGLSAGTGVEDRDVAADRALLIVEQMKRQNIQPTTVTYNTLIRAFVFRDRTEEAVSLYRSMKNPNRITFSHMMQAAANTRDKRLADDLLDHLEQVNERPNYSLIKSYLEIVADKHGIQSAFDETKRLAERFGNVVVFGDVGSAEAIRMALISACGKVRQVEAAFDALRLHLSGDSSGALAPLYVSTVLMQVCFSCGEHGRALEVFESLKQAGLKPNFEVYESLIYGLASHVRKAASRG--SQLEHEDSGDGEEEEEGHIMHAVGAVDGTIVEGADAQE----LKQWMRLIVHLLEEMHADGVARVSREAAYVYNTVLAAAAAAGDFDLSLQIFNRMTTRRNRNVVYLARDEASTAETH----TLESELEFPTATVGTYNSMMFAAWKCGVPSFSFEAFDLMLADRAAEPNGATLSLLADIALQEGQLKTEWLQKLLHVLDKVPILPERVCRKRVRLRQKLLALRWS 800
             W  + +++ PS V+ VPA       R R+RQLR+ G+   A RV R++GL++SR++ D+VE LLVLL S +F  PR+RL AM+  L+ A+ D  AA YNVVL ACAR+AARL   S A+  V L TA  +WTQL  R + + PRS ALMYRICGDC+NLQLAR IR  TNDP +    A    P SSE ATAAYILCLGKC RA EAEQLYFSPHL  LR++ R+L ALF+AYVASN ISKAESLIAMYG  FL VQSCNAFVK CAQLRLHDTAI FV RMA S +T +P PNARTYNLLLRGLSAGTGVEDRDVAADRALL+VEQMK Q I PTTVTYNTLIRAFVFR++ ++A+ LYR M  PNRITFSH+M AAA TRD  LA +LL HLEQ+NERPNYS +KSYL+++A   G+Q+AF+   RLAERFG+VVVFGDVGSAEA+RMALISACGKVR V+AAF+AL  +L+GD  G LAPLYVSTVLMQVC +CGE GRALEVFESLKQAGL+PNFEVYESLIYGLAS+VR+AA R   S  E     DGEEE        V  V+G +   AD Q+    L Q + LIV L+ EMHA GVARVSR+AAYVYNTVLAAAAAAGD +L+LQ+FN+MT   NRN+VY+AR  +   +        E E+EFP ATVGTYNSMMFAAWKCGVPSFSFEAFD+ML+DR+AEPN ATLSLLAD+AL+E  +  EWLQKLL +LD++PIL + VC+KRVRLRQK+LALRWS
Sbjct:   35 RWHAVAVLEAPSSVAVVPA-THAPSPRLRSRQLRLSGNNREAYRVARVSGLQYSRNQHDLVEYLLVLLVSDRFDGPRQRLDAMISALKHAKCDCSAAVYNVVLAACARDAARLGAGSHARSQVVLRTAYHVWTQLTDRFAAVQPRSIALMYRICGDCHNLQLARHIRARTNDPVLANTVAQPVPPLSSEHATAAYILCLGKCDRAVEAEQLYFSPHLTHLRANHRVLGALFQAYVASNRISKAESLIAMYGTAFLTVQSCNAFVKHCAQLRLHDTAITFVQRMADSESTAYPPPNARTYNLLLRGLSAGTGVEDRDVAADRALLVVEQMKHQRIHPTTVTYNTLIRAFVFRNQIQQALQLYRRMSTPNRITFSHLMHAAAKTRDIHLAQNLLHHLEQLNERPNYSFMKSYLQLIAQVDGVQAAFEHATRLAERFGHVVVFGDVGSAEAVRMALISACGKVRDVQAAFEALSHNLAGDKGGLLAPLYVSTVLMQVCLACGEPGRALEVFESLKQAGLQPNFEVYESLIYGLASYVRRAAYREWHSAQEGAQRDDGEEELSTVPDDGVAEVEG-VAGDADTQQQAAQLSQCISLIVQLIGEMHASGVARVSRQAAYVYNTVLAAAAAAGDLNLALQVFNKMTPTNNRNIVYVARSNSGKGDEDGCDGLFEREVEFPAATVGTYNSMMFAAWKCGVPSFSFEAFDMMLSDRSAEPNAATLSLLADVALEEANVDVEWLQKLLQLLDRMPILSDVVCKKRVRLRQKVLALRWS 801          
BLAST of Gcaud2057.t1 vs. uniprot
Match: R7QQS3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQS3_CHOCR)

HSP 1 Score: 741 bits (1912), Expect = 1.260e-255
Identity = 428/814 (52.58%), Postives = 541/814 (66.46%), Query Frame = 0
Query:   47 LTLIDGPSWVSAVPARAGVEMSRARARQLRMQGDLTAAMRVVRLAGLRFSRDERDVVECLLVLLGSPQFTAPRERLLAMVDVLRDARGDLGAAAYNVVLTACAREAARLTHNSAAK-DYVLHTASRMWTQLGRRGSHIHPRSTALMYRICGDCNNLQLARRIRDHTNDPAVPRARAASPKPQSSELATAAYILCLGKCHRAQEAEQLYFSPHLAKLRSSDRMLSALFRAYVASNAISKAESLIAMYGATFLNVQSCNAFVKQCAQLRLHDTAIAFVNRMARSSTTRFPSPNARTYNLLLRGLSAGTGVEDRDVAADRALLIVEQMKRQNIQPTTVTYNTLIRAFVFRDRTEEAVSLYRSMKNPNRITFSHMMQAAANTRDKRLADDLLDHLEQVNERPNYSLIKSYLEIVADKHGIQSAFDETKRLAERFGNVVVFGDVGSAEAIRMALISACGKVRQVEAAFDALRLHLSG--DSSGALAPLYVSTVLMQVCFSCGEHGRALEVFESLKQAGLKPNFEVYESLIYGLASHVR-KAASRGSQLEHEDSGD---GEEEEEGHIM------------HAVGAVDGTIVEGADAQ------ELKQWMRLIVHLLEEMHADGVARVSREAAYVYNTVLAAAAAAGDFDLSLQIFNRMTTRRNRNVVYLARDE----------------------------------ASTAETHTLESELEFPTATVGTYNSMMFAAWKCGVPSFSFEAFDLMLADRAAEPNGATLSLLADIALQEGQ-LKTEWLQKLLHVLDKVPILPERVCRKRVRLRQKLLALRWS 800
            +++ +G SWVS VP + G++  R+R+R LR  GD  AA +V+  AG   SR E D++E LLVLL + +F  PRERL AMV+ L  +      AA+N++LTACAREA R++ NS+ K D +L  A  +W ++ +    + PR+TALMYRICG+C +++LA+ IR+  NDPA+  A        S + ATAA+ILCLGKC R+ EAEQLYFS + +  RSSD +LSALFR+YVASN ISKAESLI+MYG+ FL V SCNAFVKQCA LRLHD+A+ FV RM+R++ T FP PNA+TYNLLLRGLSAGTG EDRDVAADRAL++V+QMK Q I PTTVTYNTLIR+ VFR + +EA+ LYR M +PNRITFSH+MQ AAN  D  LA+D+   L Q  ERPNY   KSYLE +A   G  +AF E  R++E FG+ +VFGDVGS EAIRMALISACGKV  +  AF+AL L L+   ++ G LAPLYV+TVLMQVC  C   GRALEVF+S++ AGLKPNFEVYESLI+GL S+VR +  +     + E+  D   G+     H +            H          +G   +      E  + +R+ V LL EMHA+G  R  R+AAYVYNT++AAAAA  DF+L+LQIFN+M+ R N+ VVY ++D                                   A+ A T   +SE EFP ATVGTYNSM+ AAWKCG P +SFE F LM  DR  EPN ATLSLLADIAL E   +  +  +KLL  LD + IL   V +KR+RLR+KLLALRWS
Sbjct:   39 MSVKEGKSWVSMVPQK-GLQHPRSRSRDLRFAGDARAAHKVLLRAGAHRSRHEADLIELLLVLLNTDEFKGPRERLEAMVNALWKSPSSKPKAAFNILLTACAREAGRVSDNSSVKRDVILKVAKSVWAEMLQTVKRVDPRNTALMYRICGECKDIELAKSIREQINDPAIFPAGGDGASLSSVD-ATAAFILCLGKCGRSGEAEQLYFSGYSSAHRSSDMVLSALFRSYVASNRISKAESLISMYGSGFLTVLSCNAFVKQCAALRLHDSALEFVGRMSRTNETGFPGPNAQTYNLLLRGLSAGTGTEDRDVAADRALVVVDQMKAQGIAPTTVTYNTLIRSLVFRHQMKEALELYRGMDSPNRITFSHLMQGAANIPDLELAEDIFASLVQAGERPNYGFCKSYLETIAKLKGTDAAFTEATRVSEEFGDALVFGDVGSHEAIRMALISACGKVGDLSKAFEALDLPLASHRNTVGNLAPLYVATVLMQVCLQCHAPGRALEVFDSVRGAGLKPNFEVYESLIHGLCSYVRFRGVTEAFHADIENENDKSLGDWTPNSHTLAPAENSSSDRGRHEAAQSFEQSEDGRQDRVPSGNVEANEAVRIAVELLREMHANGEGRAIRQAAYVYNTMIAAAAAINDFELALQIFNKMSNRNNQGVVYFSKDILGGVDEAQQDVGMSSEPPGGNRRPDEDGGGRARLAALASTGMFDSEYEFPMATVGTYNSMIDAAWKCGEPWYSFEVFQLMQMDRITEPNVATLSLLADIALSESHAVDADAQRKLLKELDAMAILSGDVSQKRIRLRKKLLALRWS 850          
BLAST of Gcaud2057.t1 vs. uniprot
Match: A0A2V3IN37_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN37_9FLOR)

HSP 1 Score: 232 bits (592), Expect = 2.660e-68
Identity = 118/170 (69.41%), Postives = 140/170 (82.35%), Query Frame = 0
Query:  635 MHADGVARVSREAAYVYNTVLAAAAAAGDFDLSLQIFNRMTTRRNRNVVYLARDEASTAETH----TLESELEFPTATVGTYNSMMFAAWKCGVPSFSFEAFDLMLADRAAEPNGATLSLLADIALQEGQLKTEWLQKLLHVLDKVPILPERVCRKRVRLRQKLLALRWS 800
            MHA GVARVSR+AAYVYNTVLAAAA A D +L+LQ+FN+MT   NRN+VY+AR  +   +        E E+EFP ATVGTYNSMMFAAWKCGVPSFSFEAFD+ML+DR+AEPN ATLSLLAD+AL+E  +  EWLQKLL +LD++PIL + VC+KRVRLRQK+LALRWS
Sbjct:    1 MHASGVARVSRQAAYVYNTVLAAAATAVDLNLALQVFNKMTPTNNRNIVYVARSNSGKGDEDGFDGLFEREVEFPAATVGTYNSMMFAAWKCGVPSFSFEAFDMMLSDRSAEPNAATLSLLADVALEEANVDVEWLQKLLQLLDRMPILSDVVCKKRVRLRQKVLALRWS 170          
The following BLAST results are available for this feature:
BLAST of Gcaud2057.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IN30_9FLOR0.000e+066.06Putative pentatricopeptide repeat-containing prote... [more]
R7QQS3_CHOCR1.260e-25552.58Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IN37_9FLOR2.660e-6869.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 530..568
e-value: 6.1E-4
score: 19.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 377..421
e-value: 1.7E-8
score: 34.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 649..676
e-value: 0.0024
score: 15.9
coord: 380..406
e-value: 1.6E-4
score: 19.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 650..676
e-value: 0.077
score: 13.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 525..559
score: 8.714292
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 378..412
score: 9.251395
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 486..586
e-value: 1.4E-8
score: 36.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 613..787
e-value: 3.9E-10
score: 41.6
coord: 293..485
e-value: 3.0E-24
score: 88.0
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 493..761
coord: 137..573
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..800

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3503_length_3348_cov_3.569235contigNODE_3503_length_3348_cov_3.569235:401..2803 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2057.t1Gcaud2057.t1Gracilaria caudata M_176_S67 malemRNANODE_3503_length_3348_cov_3.569235 401..2803 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2057.t1 ID=Gcaud2057.t1|Name=Gcaud2057.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=801bp
MLRVALRAADGVLAARCAAALSAPPRVRCGAARAACSAVTRAEWRTLTLI
DGPSWVSAVPARAGVEMSRARARQLRMQGDLTAAMRVVRLAGLRFSRDER
DVVECLLVLLGSPQFTAPRERLLAMVDVLRDARGDLGAAAYNVVLTACAR
EAARLTHNSAAKDYVLHTASRMWTQLGRRGSHIHPRSTALMYRICGDCNN
LQLARRIRDHTNDPAVPRARAASPKPQSSELATAAYILCLGKCHRAQEAE
QLYFSPHLAKLRSSDRMLSALFRAYVASNAISKAESLIAMYGATFLNVQS
CNAFVKQCAQLRLHDTAIAFVNRMARSSTTRFPSPNARTYNLLLRGLSAG
TGVEDRDVAADRALLIVEQMKRQNIQPTTVTYNTLIRAFVFRDRTEEAVS
LYRSMKNPNRITFSHMMQAAANTRDKRLADDLLDHLEQVNERPNYSLIKS
YLEIVADKHGIQSAFDETKRLAERFGNVVVFGDVGSAEAIRMALISACGK
VRQVEAAFDALRLHLSGDSSGALAPLYVSTVLMQVCFSCGEHGRALEVFE
SLKQAGLKPNFEVYESLIYGLASHVRKAASRGSQLEHEDSGDGEEEEEGH
IMHAVGAVDGTIVEGADAQELKQWMRLIVHLLEEMHADGVARVSREAAYV
YNTVLAAAAAAGDFDLSLQIFNRMTTRRNRNVVYLARDEASTAETHTLES
ELEFPTATVGTYNSMMFAAWKCGVPSFSFEAFDLMLADRAAEPNGATLSL
LADIALQEGQLKTEWLQKLLHVLDKVPILPERVCRKRVRLRQKLLALRWS
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf