Gcaud2057.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2057.t1
Unique Name	Gcaud2057.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	801

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3503_length_3348_cov_3.569235	contig	NODE_3503_length_3348_cov_3.569235:401..2803 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2057	Gcaud2057	Gracilaria caudata M_176_S67 male	gene	NODE_3503_length_3348_cov_3.569235 401..2803 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2057.t1.start1	Gcaud2057.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3503_length_3348_cov_3.569235 401..403 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2057.t1.CDS1	Gcaud2057.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3503_length_3348_cov_3.569235 401..2803 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2057.t1.exon1	Gcaud2057.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3503_length_3348_cov_3.569235 401..2803 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2057.t1.stop1	Gcaud2057.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3503_length_3348_cov_3.569235 2801..2803 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2057.t1	Gcaud2057.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3503_length_3348_cov_3.569235 401..2803 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3503_length_3348_cov_3.569235:401..2803+
coding sequence from alignment at NODE_3503_length_3348_cov_3.569235:401..2803+

mRNA sequence

>Gcaud2057.t1 ID=Gcaud2057.t1|Name=Gcaud2057.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp
MLRVALRAADGVLAARCAAALSAPPRVRCGAARAACSAVTRAEWRTLTLI
DGPSWVSAVPARAGVEMSRARARQLRMQGDLTAAMRVVRLAGLRFSRDER
DVVECLLVLLGSPQFTAPRERLLAMVDVLRDARGDLGAAAYNVVLTACAR
EAARLTHNSAAKDYVLHTASRMWTQLGRRGSHIHPRSTALMYRICGDCNN
LQLARRIRDHTNDPAVPRARAASPKPQSSELATAAYILCLGKCHRAQEAE
QLYFSPHLAKLRSSDRMLSALFRAYVASNAISKAESLIAMYGATFLNVQS
CNAFVKQCAQLRLHDTAIAFVNRMARSSTTRFPSPNARTYNLLLRGLSAG
TGVEDRDVAADRALLIVEQMKRQNIQPTTVTYNTLIRAFVFRDRTEEAVS
LYRSMKNPNRITFSHMMQAAANTRDKRLADDLLDHLEQVNERPNYSLIKS
YLEIVADKHGIQSAFDETKRLAERFGNVVVFGDVGSAEAIRMALISACGK
VRQVEAAFDALRLHLSGDSSGALAPLYVSTVLMQVCFSCGEHGRALEVFE
SLKQAGLKPNFEVYESLIYGLASHVRKAASRGSQLEHEDSGDGEEEEEGH
IMHAVGAVDGTIVEGADAQELKQWMRLIVHLLEEMHADGVARVSREAAYV
YNTVLAAAAAAGDFDLSLQIFNRMTTRRNRNVVYLARDEASTAETHTLES
ELEFPTATVGTYNSMMFAAWKCGVPSFSFEAFDLMLADRAAEPNGATLSL
LADIALQEGQLKTEWLQKLLHVLDKVPILPERVCRKRVRLRQKLLALRWS
*

spliced messenger RNA

>Gcaud2057.t1 ID=Gcaud2057.t1|Name=Gcaud2057.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2403bp|location=Sequence derived from alignment at NODE_3503_length_3348_cov_3.569235:401..2803+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgctgcgtgtggcgctgcgcgccgccgacggcgtgcttgccgcgcgctg
cgccgccgcgctgagcgcgccgccgcgcgtgcgttgcggcgctgcgcgcg
cggcgtgttcggctgtgacgcgcgcggagtggcgcacgctcacgctcatc
gacggcccgtcgtgggtgtcggccgtccccgcgcgcgcgggcgtcgagat
gtcgcgcgcgcgcgcCAGGCAGCTGCGCATGCAGGGCGACTTGACGGCGG
CGATGCGCGTGGTGCGGCTGGCCGGGCTGCGCTTCAGCCGCGACGAGCGC
GACGTGGTGGAGTGTCTGCTGGTGCTGCTGGGCTCGCCGCAGTTCACGGC
GCCGAGGGAGCGCCTGCTCGCCATGGTGGACGTGCTTCGCGACGCGAGGG
GCGATCTTGGCGCCGCGGCGTACAACGTCGTGCTCACTGCGTGCGCCAGG
GAGGCTGCGCGTCTCACGCACAACTCCGCTGCAAAGGACTACGTGCTGCA
CACTGCCAGCCGCATGTGGACCCAGTTGGGCCGACGCGGCTCGCACATTC
ACCCGCGTTCTACGGCGCTCATGTACAGAATATGCGGCGACTGCAACAAC
CTGCAGCTCGCGCGTCGCATTCGCGATCATACAAATGACCCCGCTGTTCC
GCGTGCGCGCGCTGCCTCCCCAAAGCCTCAGTCCAGCGAGCTTGCCACGG
CCGCGTACATTCTGTGTCTTGGCAAGTGTCACCGCGCCCAAGAGGCCGAG
CAGCTGTACTTTAGCCCTCACCTAGCAAAACTCCGCTCCAGTGATCGCAT
GCTCAGCGCTCTGTTCCGAGCGTATGTCGCTTCCAATGCCATTTCGAAGG
CCGAATCCCTCATTGCAATGTACGGCGCTACTTTTCTCAATGTCCAGAGC
TGCAACGCCTTCGTGAAGCAGTGCGCGCAGCTGCGTCTACATGACACCGC
CATAGCCTTTGTCAATCGCATGGCAAGATCCTCCACCACCCGCTTTCCGT
CCCCGAATGCGCGCACTTACAACCTGCTGCTGCGCGGTCTGTCGGCAGGC
ACGGGTGTGGAGGATCGTGACGTTGCTGCCGATCGCGCCCTGTTGATTGT
GGAGCAGATGAAAAGGCAGAATATTCAGCCTACTACCGTCACCTACAATA
CACTGATCAGGGCGTTTGTGTTCCGAGATCGCACCGAAGAGGCCGTCAGC
CTATATCGCTCTATGAAGAATCCTAACCGAATTACTTTCAGTCACATGAT
GCAGGCCGCAGCAAACACGCGCGACAAACGGCTGGCCGACGATCTTCTTG
ACCACCTAGAGCAAGTGAATGAGCGCCCCAATTACAGTTTAATCAAGTCA
TACTTGGAGATTGTCGCCGATAAGCACGGCATTCAGAGCGCATTTGACGA
GACCAAGCGGCTAGCAGAGCGCTTCGGCAACGTCGTTGTGTTTGGTGACG
TTGGCAGTGCTGAGGCCATTCGCATGGCACTCATCAGCGCGTGCGGAAAG
GTGCGCCAAGTGGAAGCGGCGTTTGATGCTTTGCGGCTTCACTTGAGTGG
AGATAGTAGTGGAGCATTGGCACCGCTGTACGTTTCCACGGTGCTTATGC
AAGTTTGCTTCTCATGTGGCGAGCATGGACGTGCCTTGGAAGTTTTCGAG
TCTCTCAAGCAGGCTGGATTGAAACCGAACTTTGAGGTGTACGAGAGCCT
CATCTACGGACTTGCGTCACATGTGAGAAAGGCGGCCTCACGGGGGAGCC
AACTAGAACATGAAGATTCCGGCGATGGGGAGGAAGAGGAGGAGGGACAC
ATAATGCACGCGGTTGGGGCTGTTGATGGTACCATTGTGGAGGGTGCAGA
TGCGCAGGAGTTAAAGCAATGGATGCGACTTATTGTGCATCTCCTTGAAG
AGATGCATGCGGATGGCGTCGCAAGAGTGAGCCGCGAGGCGGCGTATGTG
TACAACACGGTGCTAGCGGCGGCAGCTGCAGCAGGGGACTTTGATCTGTC
GCTACAGATCTTCAACAGAATGACCACAAGAAGAAATCGTAATGTGGTGT
ATCTGGCGCGCGATGAAGCGAGTACGGCGGAAACGCATACGCTTGAGAGT
GAGCTGGAATTCCCCACTGCGACGGTGGGCACTTACAATTCGATGATGTT
TGCGGCATGGAAGTGCGGCGTGCCTTCTTTTTCGTTCGAGGCGTTTGATT
TGATGCTGGCCGATCGTGCCGCGGAGCCTAACGGGGCCACGTTGAGTTTA
TTGGCGGACATTGCGTTGCAGGAGGGGCAGTTGAAGACTGAATGGTTGCA
AAAGTTGTTGCACGTTTTGGACAAGGTGCCTATCTTACCGGAGCGTGTGT
GTAGAAAGCGGGTGAGGCTGAGGCAAAAGCTGCTGGCGTTGAGGTGGTCG
TAG

protein sequence of Gcaud2057.t1

>Gcaud2057.t1 ID=Gcaud2057.t1|Name=Gcaud2057.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=801bp
MLRVALRAADGVLAARCAAALSAPPRVRCGAARAACSAVTRAEWRTLTLI
DGPSWVSAVPARAGVEMSRARARQLRMQGDLTAAMRVVRLAGLRFSRDER
DVVECLLVLLGSPQFTAPRERLLAMVDVLRDARGDLGAAAYNVVLTACAR
EAARLTHNSAAKDYVLHTASRMWTQLGRRGSHIHPRSTALMYRICGDCNN
LQLARRIRDHTNDPAVPRARAASPKPQSSELATAAYILCLGKCHRAQEAE
QLYFSPHLAKLRSSDRMLSALFRAYVASNAISKAESLIAMYGATFLNVQS
CNAFVKQCAQLRLHDTAIAFVNRMARSSTTRFPSPNARTYNLLLRGLSAG
TGVEDRDVAADRALLIVEQMKRQNIQPTTVTYNTLIRAFVFRDRTEEAVS
LYRSMKNPNRITFSHMMQAAANTRDKRLADDLLDHLEQVNERPNYSLIKS
YLEIVADKHGIQSAFDETKRLAERFGNVVVFGDVGSAEAIRMALISACGK
VRQVEAAFDALRLHLSGDSSGALAPLYVSTVLMQVCFSCGEHGRALEVFE
SLKQAGLKPNFEVYESLIYGLASHVRKAASRGSQLEHEDSGDGEEEEEGH
IMHAVGAVDGTIVEGADAQELKQWMRLIVHLLEEMHADGVARVSREAAYV
YNTVLAAAAAAGDFDLSLQIFNRMTTRRNRNVVYLARDEASTAETHTLES
ELEFPTATVGTYNSMMFAAWKCGVPSFSFEAFDLMLADRAAEPNGATLSL
LADIALQEGQLKTEWLQKLLHVLDKVPILPERVCRKRVRLRQKLLALRWS
*

mRNA from alignment at NODE_3503_length_3348_cov_3.569235:401..2803+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2057.t1 ID=Gcaud2057.t1|Name=Gcaud2057.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2403bp|location=Sequence derived from alignment at NODE_3503_length_3348_cov_3.569235:401..2803+ (Gracilaria caudata M_176_S67 male)
atgctgcgtgtggcgctgcgcgccgccgacggcgtgcttgccgcgcgctg
cgccgccgcgctgagcgcgccgccgcgcgtgcgttgcggcgctgcgcgcg
cggcgtgttcggctgtgacgcgcgcggagtggcgcacgctcacgctcatc
gacggcccgtcgtgggtgtcggccgtccccgcgcgcgcgggcgtcgagat
gtcgcgcgcgcgcgcCAGGCAGCTGCGCATGCAGGGCGACTTGACGGCGG
CGATGCGCGTGGTGCGGCTGGCCGGGCTGCGCTTCAGCCGCGACGAGCGC
GACGTGGTGGAGTGTCTGCTGGTGCTGCTGGGCTCGCCGCAGTTCACGGC
GCCGAGGGAGCGCCTGCTCGCCATGGTGGACGTGCTTCGCGACGCGAGGG
GCGATCTTGGCGCCGCGGCGTACAACGTCGTGCTCACTGCGTGCGCCAGG
GAGGCTGCGCGTCTCACGCACAACTCCGCTGCAAAGGACTACGTGCTGCA
CACTGCCAGCCGCATGTGGACCCAGTTGGGCCGACGCGGCTCGCACATTC
ACCCGCGTTCTACGGCGCTCATGTACAGAATATGCGGCGACTGCAACAAC
CTGCAGCTCGCGCGTCGCATTCGCGATCATACAAATGACCCCGCTGTTCC
GCGTGCGCGCGCTGCCTCCCCAAAGCCTCAGTCCAGCGAGCTTGCCACGG
CCGCGTACATTCTGTGTCTTGGCAAGTGTCACCGCGCCCAAGAGGCCGAG
CAGCTGTACTTTAGCCCTCACCTAGCAAAACTCCGCTCCAGTGATCGCAT
GCTCAGCGCTCTGTTCCGAGCGTATGTCGCTTCCAATGCCATTTCGAAGG
CCGAATCCCTCATTGCAATGTACGGCGCTACTTTTCTCAATGTCCAGAGC
TGCAACGCCTTCGTGAAGCAGTGCGCGCAGCTGCGTCTACATGACACCGC
CATAGCCTTTGTCAATCGCATGGCAAGATCCTCCACCACCCGCTTTCCGT
CCCCGAATGCGCGCACTTACAACCTGCTGCTGCGCGGTCTGTCGGCAGGC
ACGGGTGTGGAGGATCGTGACGTTGCTGCCGATCGCGCCCTGTTGATTGT
GGAGCAGATGAAAAGGCAGAATATTCAGCCTACTACCGTCACCTACAATA
CACTGATCAGGGCGTTTGTGTTCCGAGATCGCACCGAAGAGGCCGTCAGC
CTATATCGCTCTATGAAGAATCCTAACCGAATTACTTTCAGTCACATGAT
GCAGGCCGCAGCAAACACGCGCGACAAACGGCTGGCCGACGATCTTCTTG
ACCACCTAGAGCAAGTGAATGAGCGCCCCAATTACAGTTTAATCAAGTCA
TACTTGGAGATTGTCGCCGATAAGCACGGCATTCAGAGCGCATTTGACGA
GACCAAGCGGCTAGCAGAGCGCTTCGGCAACGTCGTTGTGTTTGGTGACG
TTGGCAGTGCTGAGGCCATTCGCATGGCACTCATCAGCGCGTGCGGAAAG
GTGCGCCAAGTGGAAGCGGCGTTTGATGCTTTGCGGCTTCACTTGAGTGG
AGATAGTAGTGGAGCATTGGCACCGCTGTACGTTTCCACGGTGCTTATGC
AAGTTTGCTTCTCATGTGGCGAGCATGGACGTGCCTTGGAAGTTTTCGAG
TCTCTCAAGCAGGCTGGATTGAAACCGAACTTTGAGGTGTACGAGAGCCT
CATCTACGGACTTGCGTCACATGTGAGAAAGGCGGCCTCACGGGGGAGCC
AACTAGAACATGAAGATTCCGGCGATGGGGAGGAAGAGGAGGAGGGACAC
ATAATGCACGCGGTTGGGGCTGTTGATGGTACCATTGTGGAGGGTGCAGA
TGCGCAGGAGTTAAAGCAATGGATGCGACTTATTGTGCATCTCCTTGAAG
AGATGCATGCGGATGGCGTCGCAAGAGTGAGCCGCGAGGCGGCGTATGTG
TACAACACGGTGCTAGCGGCGGCAGCTGCAGCAGGGGACTTTGATCTGTC
GCTACAGATCTTCAACAGAATGACCACAAGAAGAAATCGTAATGTGGTGT
ATCTGGCGCGCGATGAAGCGAGTACGGCGGAAACGCATACGCTTGAGAGT
GAGCTGGAATTCCCCACTGCGACGGTGGGCACTTACAATTCGATGATGTT
TGCGGCATGGAAGTGCGGCGTGCCTTCTTTTTCGTTCGAGGCGTTTGATT
TGATGCTGGCCGATCGTGCCGCGGAGCCTAACGGGGCCACGTTGAGTTTA
TTGGCGGACATTGCGTTGCAGGAGGGGCAGTTGAAGACTGAATGGTTGCA
AAAGTTGTTGCACGTTTTGGACAAGGTGCCTATCTTACCGGAGCGTGTGT
GTAGAAAGCGGGTGAGGCTGAGGCAAAAGCTGCTGGCGTTGAGGTGGTCG
TAG

Coding sequence (CDS) from alignment at NODE_3503_length_3348_cov_3.569235:401..2803+

>Gcaud2057.t1 ID=Gcaud2057.t1|Name=Gcaud2057.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2403bp|location=Sequence derived from alignment at NODE_3503_length_3348_cov_3.569235:401..2803+ (Gracilaria caudata M_176_S67 male)
atgctgcgtgtggcgctgcgcgccgccgacggcgtgcttgccgcgcgctg
cgccgccgcgctgagcgcgccgccgcgcgtgcgttgcggcgctgcgcgcg
cggcgtgttcggctgtgacgcgcgcggagtggcgcacgctcacgctcatc
gacggcccgtcgtgggtgtcggccgtccccgcgcgcgcgggcgtcgagat
gtcgcgcgcgcgcgcCAGGCAGCTGCGCATGCAGGGCGACTTGACGGCGG
CGATGCGCGTGGTGCGGCTGGCCGGGCTGCGCTTCAGCCGCGACGAGCGC
GACGTGGTGGAGTGTCTGCTGGTGCTGCTGGGCTCGCCGCAGTTCACGGC
GCCGAGGGAGCGCCTGCTCGCCATGGTGGACGTGCTTCGCGACGCGAGGG
GCGATCTTGGCGCCGCGGCGTACAACGTCGTGCTCACTGCGTGCGCCAGG
GAGGCTGCGCGTCTCACGCACAACTCCGCTGCAAAGGACTACGTGCTGCA
CACTGCCAGCCGCATGTGGACCCAGTTGGGCCGACGCGGCTCGCACATTC
ACCCGCGTTCTACGGCGCTCATGTACAGAATATGCGGCGACTGCAACAAC
CTGCAGCTCGCGCGTCGCATTCGCGATCATACAAATGACCCCGCTGTTCC
GCGTGCGCGCGCTGCCTCCCCAAAGCCTCAGTCCAGCGAGCTTGCCACGG
CCGCGTACATTCTGTGTCTTGGCAAGTGTCACCGCGCCCAAGAGGCCGAG
CAGCTGTACTTTAGCCCTCACCTAGCAAAACTCCGCTCCAGTGATCGCAT
GCTCAGCGCTCTGTTCCGAGCGTATGTCGCTTCCAATGCCATTTCGAAGG
CCGAATCCCTCATTGCAATGTACGGCGCTACTTTTCTCAATGTCCAGAGC
TGCAACGCCTTCGTGAAGCAGTGCGCGCAGCTGCGTCTACATGACACCGC
CATAGCCTTTGTCAATCGCATGGCAAGATCCTCCACCACCCGCTTTCCGT
CCCCGAATGCGCGCACTTACAACCTGCTGCTGCGCGGTCTGTCGGCAGGC
ACGGGTGTGGAGGATCGTGACGTTGCTGCCGATCGCGCCCTGTTGATTGT
GGAGCAGATGAAAAGGCAGAATATTCAGCCTACTACCGTCACCTACAATA
CACTGATCAGGGCGTTTGTGTTCCGAGATCGCACCGAAGAGGCCGTCAGC
CTATATCGCTCTATGAAGAATCCTAACCGAATTACTTTCAGTCACATGAT
GCAGGCCGCAGCAAACACGCGCGACAAACGGCTGGCCGACGATCTTCTTG
ACCACCTAGAGCAAGTGAATGAGCGCCCCAATTACAGTTTAATCAAGTCA
TACTTGGAGATTGTCGCCGATAAGCACGGCATTCAGAGCGCATTTGACGA
GACCAAGCGGCTAGCAGAGCGCTTCGGCAACGTCGTTGTGTTTGGTGACG
TTGGCAGTGCTGAGGCCATTCGCATGGCACTCATCAGCGCGTGCGGAAAG
GTGCGCCAAGTGGAAGCGGCGTTTGATGCTTTGCGGCTTCACTTGAGTGG
AGATAGTAGTGGAGCATTGGCACCGCTGTACGTTTCCACGGTGCTTATGC
AAGTTTGCTTCTCATGTGGCGAGCATGGACGTGCCTTGGAAGTTTTCGAG
TCTCTCAAGCAGGCTGGATTGAAACCGAACTTTGAGGTGTACGAGAGCCT
CATCTACGGACTTGCGTCACATGTGAGAAAGGCGGCCTCACGGGGGAGCC
AACTAGAACATGAAGATTCCGGCGATGGGGAGGAAGAGGAGGAGGGACAC
ATAATGCACGCGGTTGGGGCTGTTGATGGTACCATTGTGGAGGGTGCAGA
TGCGCAGGAGTTAAAGCAATGGATGCGACTTATTGTGCATCTCCTTGAAG
AGATGCATGCGGATGGCGTCGCAAGAGTGAGCCGCGAGGCGGCGTATGTG
TACAACACGGTGCTAGCGGCGGCAGCTGCAGCAGGGGACTTTGATCTGTC
GCTACAGATCTTCAACAGAATGACCACAAGAAGAAATCGTAATGTGGTGT
ATCTGGCGCGCGATGAAGCGAGTACGGCGGAAACGCATACGCTTGAGAGT
GAGCTGGAATTCCCCACTGCGACGGTGGGCACTTACAATTCGATGATGTT
TGCGGCATGGAAGTGCGGCGTGCCTTCTTTTTCGTTCGAGGCGTTTGATT
TGATGCTGGCCGATCGTGCCGCGGAGCCTAACGGGGCCACGTTGAGTTTA
TTGGCGGACATTGCGTTGCAGGAGGGGCAGTTGAAGACTGAATGGTTGCA
AAAGTTGTTGCACGTTTTGGACAAGGTGCCTATCTTACCGGAGCGTGTGT
GTAGAAAGCGGGTGAGGCTGAGGCAAAAGCTGCTGGCGTTGAGGTGGTCG
TAG