Gcaud1662.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1662.t1
Unique NameGcaud1662.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length234
Homology
BLAST of Gcaud1662.t1 vs. uniprot
Match: A0A2V3IUX1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX1_9FLOR)

HSP 1 Score: 360 bits (924), Expect = 2.120e-124
Identity = 173/216 (80.09%), Postives = 191/216 (88.43%), Query Frame = 0
Query:   17 RVAKLEAKEKNVGRRAALGNGNGPPEAVDAFANHIRVLALSAGFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMENTRHEGHSDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPSMKAFNYRLGEDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWLGAGEVSLKWRVRIPEFFSAFNPFVIDFVNKED 232
            RV  LEA++K   R        GPPEA+D FANHIRVLA +AGF+D+RLVRCPDPYY+WTLEKRR+YL+APA++HLTKSIVM NTRHEG SDPSHPT+S+YLCCVVPY AKIDSDKLRAAIR+MF   GLPTPS+KAFNYRLGEDCI+VTGYVPNGVTPLGLLTPMPVVVAKQITEL PEEFWLGAGEVSLKWRV+I EFF  FNPFVIDFVNK+D
Sbjct:    2 RVESLEAQQKKNKRNVIQQRMKGPPEALDPFANHIRVLATAAGFKDIRLVRCPDPYYTWTLEKRRSYLSAPAVSHLTKSIVMVNTRHEGPSDPSHPTSSKYLCCVVPYDAKIDSDKLRAAIRAMFLERGLPTPSIKAFNYRLGEDCIQVTGYVPNGVTPLGLLTPMPVVVAKQITELRPEEFWLGAGEVSLKWRVQIDEFFQCFNPFVIDFVNKDD 217          
BLAST of Gcaud1662.t1 vs. uniprot
Match: R7Q3A4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A4_CHOCR)

HSP 1 Score: 241 bits (616), Expect = 2.600e-77
Identity = 127/236 (53.81%), Postives = 151/236 (63.98%), Query Frame = 0
Query:    1 MTRKESFDEALQD---LEARVAKLEAKEKNVGRRAALGNGNGPPEAVDAFANHIRVLALSAGFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMENTRHEGHSDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPSMKAFNYRLGEDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWLGAGEVSLKWRVRIPEFFSAFNPFVIDFVNKEDS 233
            MT+  S  E L+    L     K+EA E + G+         P  A D FA  + V A +AGF      RCPD YYSW LEKRR  L   ++ HLTKSIV++NTRH+G  +P     S++LCCVVPY  KI+SD LR A+R +F   GL  PS + FNYRL EDCI VTGY PN VTPLGL T MPVV+AKQI +L P  FWLGAGEVSLKWRV + EF SAFNP V+DF   E+S
Sbjct:    1 MTQSSSTTEQLEPQKILLELTCKVEALESS-GKFVPSSKSRRPEAATDPFALRVLVAATAAGFTKTLFTRCPDEYYSWPLEKRRGLLRGASLHHLTKSIVLQNTRHDGDHNPDDVLRSKFLCCVVPYSTKINSDALRDAVRKLFGERGLQVPSARHFNYRLAEDCIGVTGYEPNAVTPLGLKTRMPVVLAKQIAQLDPPTFWLGAGEVSLKWRVELDEFVSAFNPVVLDFAISEES 235          
BLAST of Gcaud1662.t1 vs. uniprot
Match: A0A835VZ91_CHLIN (tRNA_edit domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835VZ91_CHLIN)

HSP 1 Score: 130 bits (328), Expect = 1.420e-33
Identity = 76/171 (44.44%), Postives = 103/171 (60.23%), Query Frame = 0
Query:   62 DVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMENTR-HE---GHSDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPSMKAFNYRLGEDCIR--VTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWLGAGEVSLKWRVRIPEFFSAFNPFVID 226
            + R VR P  YY   LE RR  L A +I HL KSIVMENTR HE   G  DP H   S+Y C +V Y A++ +DKL+ A+      LG      + +N RL  + +   +TGY  N V+P+GL   +P++++ +IT+L PE FW+GAGEV LK  + + EF  A+ PFVID
Sbjct:   98 EARFVRVPADYYDQPLEFRRDCLGAASIDHLCKSIVMENTRAHESVTGWDDPKH---SKYYCVIVQYTARLHADKLKVALCE----LGGRRFGRQYYNMRLAPEEVNDALTGYSHNAVSPIGLKENLPIILSSKITQLDPEFFWMGAGEVDLKVGMSVNEFIEAYQPFVID 261          
BLAST of Gcaud1662.t1 vs. uniprot
Match: A0A6I9TCA3_SESIN (uncharacterized protein LOC105164309 isoform X1 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TCA3_SESIN)

HSP 1 Score: 125 bits (314), Expect = 6.420e-32
Identity = 70/179 (39.11%), Postives = 103/179 (57.54%), Query Frame = 0
Query:   51 IRVLALSAGFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMENTRHEGH-SDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPSMKAFNYRLG--EDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWLGAGEVSLKWRVRIPEFFSAFNPFVID 226
            +  + LS   RD    R P  YY WTLE RR  L A +I HL KSIV+ NT+     +D S    S+Y   VV Y A+ +++ ++  + ++  G      S K FN RL   E   ++TGY  NGVT +G+ T +PV++ + IT+L+P+ FWLG GE+ LKW +R  EF +   PF+++
Sbjct:   48 LSAILLSNSVRDFSFKRVPSDYYEWTLEARRDILGAASIHHLCKSIVLVNTQAPPDVTDCSDRNYSKYYVVVVQYTARFNAETVKNFLYALNNG----KISKKKFNMRLAPEETSAKLTGYEHNGVTCIGMKTDIPVILDEAITKLNPDFFWLGGGEIDLKWGIRTSEFINYVKPFIVN 222          
BLAST of Gcaud1662.t1 vs. uniprot
Match: A0A7S1Q8S7_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1Q8S7_NEODS)

HSP 1 Score: 126 bits (316), Expect = 7.370e-32
Identity = 68/176 (38.64%), Postives = 97/176 (55.11%), Query Frame = 0
Query:   51 IRVLALSAGFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMENTRHEGHSDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPSMKAFNYRLGEDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWLGAGEVSLKWRVRIPEFFSAFNPFVID 226
            +R L    G +  +    P  YY   L  R+  L+AP+  HL K+IV+ENT H  + D +    SRY   V  Y  + D++K+   ++ M   +G      K FN+RL  D   VTG+  N V P GL TPMP++++K+IT+LSP  FWLG G V  K R+   EF + F+PF+ D
Sbjct:   77 LRQLTKELGLQTSKFAWVPSEYYDKPLAWRKQQLDAPSTHHLCKAIVLENT-HCVNDDCADRQNSRYYVAVFQYVQRFDAEKVMRFVKGMNERIG-----KKKFNFRLAADGEAVTGFSHNAVVPFGLKTPMPIILSKEITKLSPAHFWLGGGHVDCKLRMDTEEFIARFDPFIAD 246          
BLAST of Gcaud1662.t1 vs. uniprot
Match: A0A7J7IFP6_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IFP6_9RHOD)

HSP 1 Score: 125 bits (314), Expect = 1.420e-31
Identity = 80/200 (40.00%), Postives = 108/200 (54.00%), Query Frame = 0
Query:   33 ALGNGNGPPEAVDAFANHIRVLALSAGFRDVRLVRCPDPYYSWTLEKRRAYLN-APAIAHLTKSIVMENTR---HEGHSDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTP-SMKAFNYRLG--EDCIRVTGYVPNGVTPLGLLTPMPVVVAKQIT----ELSPEEFWLGAGEVSLKWRVRIPEFFSAFN 221
            AL +G       D  A  + VLA + G R  +  RCP  YYSWTLE+RR YL  AP + HL KS+V+EN R    +G +  S      Y+C V+PY A++ +DK+  A+RS  P L    P S     Y++   E C ++TGY  N VTPLG+ TPMP++VA  +         + FWLG G   LK  V + EF   F+
Sbjct:   48 ALISGRVQKVLTDQAAVRLVVLAAAIGLRHCQFRRCPTAYYSWTLEQRRQYLEPAPTVYHLCKSLVLENIRVTDQDGSACSS--VAPLYVCVVLPYPARLHADKVTQAVRSS-PELCTCFPVSRSQIRYQVAAAETCEQLTGYGYNAVTPLGMRTPMPILVASALVTWLQRCGDDFFWLGGGATDLKLNVSLSEFIDTFS 244          
BLAST of Gcaud1662.t1 vs. uniprot
Match: A0A8J5VI01_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VI01_ZIZPA)

HSP 1 Score: 120 bits (302), Expect = 3.900e-30
Identity = 84/215 (39.07%), Postives = 118/215 (54.88%), Query Frame = 0
Query:   17 RVAKLE-AKEKNVGRRAALGNGNGPPEAVDAFANHIRVLAL--SAGFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMENTRHEGHS-DPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPSMKAFNYRLG--EDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWLGAGEVSLKWRVRIPEFFSAFNPFVI 225
            R+A LE A ++N  R  AL     P   V+  A   R+ AL  + G  D    R P  YY   LE+RR  L A ++  L KSIVM NT+ E    D S+P  S+Y   VV Y A+++++     I++    L       K FN RL   E+  R+TG+V N VT +G+ T +PV++ + IT+L  + FWLG GEV LK  +R  +F +AFNPFV+
Sbjct:   15 RIADLELAAQQN--RLEALSVSAPPGAEVETGATEARLSALLSARGVLDFTFRRVPADYYDRPLEERRDLLCADSVDQLCKSIVMVNTQAEADVVDCSNPKNSKYYVVVVQYMARLNAEN----IKNFIYALNNKQIPKKRFNMRLAPEEESQRLTGFVHNAVTCIGMETDIPVIIDEAITKLDEDFFWLGGGEVDLKLGIRTSQFINAFNPFVV 223          
BLAST of Gcaud1662.t1 vs. uniprot
Match: M1UQM9_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UQM9_CYAM1)

HSP 1 Score: 121 bits (303), Expect = 9.100e-30
Identity = 67/182 (36.81%), Postives = 101/182 (55.49%), Query Frame = 0
Query:   48 ANHIRVLALSAGFRDVRLVRCPDPYYSWTLEKRRAYLN-APAIAHLTKSIVMENTRHEGHSDPSHPTTS-RYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPSMKAFNYRLG--EDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITE----LSPEEFWLGAGEVSLKWRVRIPEFFSAFN 221
            A  + +LA + G       RCP  YY+WTLE+RR +L  AP + HL KS+++ENTR     + S P  + RY+C ++PY A++ ++K+  A+R       L        +Y++   E C R+TGY  N VTPLG+ TPMP++VA  + +       + FWLG G   LK  V + +F   F+
Sbjct:   81 AQRLVLLAAAYGLERCLFRRCPAAYYTWTLEQRRQFLEPAPTVYHLCKSLILENTRANVDDEASGPGAAPRYVCVILPYPARLHTEKVTQAVRCSSELCQLCPAPRSQVHYQVAPAEQCQRITGYGYNAVTPLGMRTPMPILVASVLEKWLKCCRDDCFWLGGGATDLKLNVSLSDFVRVFS 262          
BLAST of Gcaud1662.t1 vs. uniprot
Match: J3LFJ3_ORYBR (tRNA_edit domain-containing protein n=14 Tax=Oryzinae TaxID=1648021 RepID=J3LFJ3_ORYBR)

HSP 1 Score: 119 bits (299), Expect = 1.230e-29
Identity = 89/233 (38.20%), Postives = 121/233 (51.93%), Query Frame = 0
Query:    7 FDEALQDLEAR-------VAKLEAKEKNVGRRAALGNGNGPP--EAVDAFANHIRVLAL--SAGFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMENTRH-EGHSDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPSMKAFNYRLG--EDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWLGAGEVSLKWRVRIPEFFSAFNPFVI 225
             D A  DLEAR       VA LE   +   R  AL     P   EA +  A   R+ A+  + G  D    R P  YY   LE+RR  L A ++  L KSIVM NT+  E   D S+P  S+Y   VV Y A++++D    +I++    L       K FN RL   E+  ++TG+V N VT +G+ T +PV+V + IT+L  + FWLG GEV LK  +R  +F  AF PFV+
Sbjct:    1 MDAAAADLEARQLRILRRVADLEVAAQQ-HRLGALSISQEPSWGEAEETSATEARLSAILTARGVLDFTFRRVPADYYDRPLEERRDLLRADSVDQLCKSIVMVNTQAAEDVIDCSNPKNSKYYVVVVQYMARLNAD----SIKNFIYALNEKQIPKKRFNMRLAPEEESQKLTGFVHNAVTCIGMETDIPVIVDEAITKLDKDFFWLGGGEVDLKLGIRTSQFLKAFQPFVV 228          
BLAST of Gcaud1662.t1 vs. uniprot
Match: A0A4S8KEP3_MUSBA (tRNA_edit domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A4S8KEP3_MUSBA)

HSP 1 Score: 119 bits (297), Expect = 2.210e-29
Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 0
Query:   59 GFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMENTRHEGH-SDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPSMKAFNYRLG--EDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWLGAGEVSLKWRVRIPEFFSAFNPFVID 226
            G  D    R P  YY   +E RR  L AP++ HL KSIV+ NT+     +D S    S+Y   V+ Y A+++++     I++    L     S K FN RL   E+ +++TG+V N VT +G+ T +PV++ + IT+L P  FWLG GEV LK R+R  +F SA NPFV++
Sbjct:   58 GVDDFAFKRVPADYYDRPIEVRRDILGAPSVEHLCKSIVLVNTQALASITDCSDRNNSKYYVVVIQYAARLNAEN----IKNFLYTLNNSKISKKKFNMRLAPEEESLKLTGFVHNAVTCIGMETDIPVILDEAITKLKPNFFWLGGGEVDLKLRIRTSQFISAVNPFVVN 224          
The following BLAST results are available for this feature:
BLAST of Gcaud1662.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUX1_9FLOR2.120e-12480.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q3A4_CHOCR2.600e-7753.81Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A835VZ91_CHLIN1.420e-3344.44tRNA_edit domain-containing protein n=2 Tax=Chlamy... [more]
A0A6I9TCA3_SESIN6.420e-3239.11uncharacterized protein LOC105164309 isoform X1 n=... [more]
A0A7S1Q8S7_NEODS7.370e-3238.64Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A7J7IFP6_9RHOD1.420e-3140.00Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A8J5VI01_ZIZPA3.900e-3039.07Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
M1UQM9_CYAM19.100e-3036.81Uncharacterized protein n=2 Tax=cellular organisms... [more]
J3LFJ3_ORYBR1.230e-2938.20tRNA_edit domain-containing protein n=14 Tax=Oryzi... [more]
A0A4S8KEP3_MUSBA2.210e-2939.77tRNA_edit domain-containing protein n=3 Tax=Musa T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..31
NoneNo IPR availablePANTHERPTHR30411UNCHARACTERIZEDcoord: 9..228
NoneNo IPR availablePANTHERPTHR30411:SF4YBAK/AMINOACYL-TRNA SYNTHETASE-ASSOCIATED DOMAIN-CONTAINING PROTEINcoord: 9..228
NoneNo IPR availableCDDcd04332YbaK_likecoord: 76..225
e-value: 3.07261E-14
score: 65.2569
IPR036754YbaK/aminoacyl-tRNA synthetase-associated domain superfamilyGENE3D3.90.960.10coord: 60..230
e-value: 4.1E-26
score: 93.5
IPR036754YbaK/aminoacyl-tRNA synthetase-associated domain superfamilySUPERFAMILY55826YbaK/ProRS associated domaincoord: 73..227

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_34_length_72082_cov_4.421108contigNODE_34_length_72082_cov_4.421108:64403..65104 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1662.t1Gcaud1662.t1Gracilaria caudata M_176_S67 malemRNANODE_34_length_72082_cov_4.421108 64403..65104 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1662.t1 ID=Gcaud1662.t1|Name=Gcaud1662.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=234bp
MTRKESFDEALQDLEARVAKLEAKEKNVGRRAALGNGNGPPEAVDAFANH
IRVLALSAGFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMEN
TRHEGHSDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPS
MKAFNYRLGEDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWL
GAGEVSLKWRVRIPEFFSAFNPFVIDFVNKEDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036754YbaK/aa-tRNA-synt-asso_dom_sf