Gcaud1662.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1662.t1
Unique Name	Gcaud1662.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	234

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:64403..65104 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDO98416
PFAMs	tRNA_edit
Max annot lvl	3041\|Chlorophyta
Evalue	4.97e-34
EggNOG OGs	28KZ5@1\|root,2QTG1@2759\|Eukaryota,37IZT@33090\|Viridiplantae,34KUZ@3041\|Chlorophyta
Description	Aminoacyl-tRNA editing domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1662	Gcaud1662	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 64403..65104 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1662.t1.start1	Gcaud1662.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 64403..64405 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1662.t1.CDS1	Gcaud1662.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 64403..65104 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1662.t1.exon1	Gcaud1662.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 64403..65104 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1662.t1.stop1	Gcaud1662.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 65102..65104 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1662.t1	Gcaud1662.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 64403..65104 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:64403..65104+
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:64403..65104+

mRNA sequence

>Gcaud1662.t1 ID=Gcaud1662.t1|Name=Gcaud1662.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=234bp
MTRKESFDEALQDLEARVAKLEAKEKNVGRRAALGNGNGPPEAVDAFANH
IRVLALSAGFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMEN
TRHEGHSDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPS
MKAFNYRLGEDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWL
GAGEVSLKWRVRIPEFFSAFNPFVIDFVNKEDS*

spliced messenger RNA

>Gcaud1662.t1 ID=Gcaud1662.t1|Name=Gcaud1662.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=702bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:64403..65104+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGGAAAGAAAGTTTTGATGAGGCACTACAGGATTTAGAAGCCCG
TGTTGCAAAACTTGAGGCGAAGGAAAAAAATGTTGGCCGCAGAGCTGCGT
TAGGTAATGGaaatggacctccagaggcggtggacgcattcgcgaaccac
attcgtgttctcgctctatctgctggcttcagagatgtaagattggtgag
atgtccggacccgtactacagctggactcttgagaagcGCCGGGCATATC
TCAATGCCCCTGCAATTGCTCATCTTACAAAATCTATTGTGATGGAGAAC
ACTCGACATGAAGGTCACTCAGATCCATCACACCCAACAACATCACGATA
CCTCTGTTGCGTTGTTCCATACTATGCGAAAATAGATTCCGATAAGCTTC
GGGCAGCAATTCGTTCCATGTTCCCTGGTCTTGGGTTGCCTACGCCGAGC
ATGAAAGCTTTCAATTATCGCTTAGGAGAAGACTGCATTAGAGTAACTGG
ATATGTTCCAAACGGTGTCACTCCGCTAGGTCTCTTGACGCCTATGCCAG
TTGTTGTCGCAAAGCAGATCACGGAGTTGAGTCCGGAGGAGTTCTGGCTG
GGCGCAGGGGAAGTGTCCTTGAAATGGCGCGTGCGAATTCCAGAGTTCTT
CAGTGCCTTTAACCCGTTTGTCATTGACTTTGTCAACAAAGAAGATAGCT
GA

protein sequence of Gcaud1662.t1

>Gcaud1662.t1 ID=Gcaud1662.t1|Name=Gcaud1662.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=234bp
MTRKESFDEALQDLEARVAKLEAKEKNVGRRAALGNGNGPPEAVDAFANH
IRVLALSAGFRDVRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVMEN
TRHEGHSDPSHPTTSRYLCCVVPYYAKIDSDKLRAAIRSMFPGLGLPTPS
MKAFNYRLGEDCIRVTGYVPNGVTPLGLLTPMPVVVAKQITELSPEEFWL
GAGEVSLKWRVRIPEFFSAFNPFVIDFVNKEDS*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:64403..65104+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1662.t1 ID=Gcaud1662.t1|Name=Gcaud1662.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=702bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:64403..65104+ (Gracilaria caudata M_176_S67 male)
ATGACTCGGAAAGAAAGTTTTGATGAGGCACTACAGGATTTAGAAGCCCG
TGTTGCAAAACTTGAGGCGAAGGAAAAAAATGTTGGCCGCAGAGCTGCGT
TAGGTAATGGaaatggacctccagaggcggtggacgcattcgcgaaccac
attcgtgttctcgctctatctgctggcttcagagatgtaagattggtgag
atgtccggacccgtactacagctggactcttgagaagcGCCGGGCATATC
TCAATGCCCCTGCAATTGCTCATCTTACAAAATCTATTGTGATGGAGAAC
ACTCGACATGAAGGTCACTCAGATCCATCACACCCAACAACATCACGATA
CCTCTGTTGCGTTGTTCCATACTATGCGAAAATAGATTCCGATAAGCTTC
GGGCAGCAATTCGTTCCATGTTCCCTGGTCTTGGGTTGCCTACGCCGAGC
ATGAAAGCTTTCAATTATCGCTTAGGAGAAGACTGCATTAGAGTAACTGG
ATATGTTCCAAACGGTGTCACTCCGCTAGGTCTCTTGACGCCTATGCCAG
TTGTTGTCGCAAAGCAGATCACGGAGTTGAGTCCGGAGGAGTTCTGGCTG
GGCGCAGGGGAAGTGTCCTTGAAATGGCGCGTGCGAATTCCAGAGTTCTT
CAGTGCCTTTAACCCGTTTGTCATTGACTTTGTCAACAAAGAAGATAGCT
GA

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:64403..65104+

>Gcaud1662.t1 ID=Gcaud1662.t1|Name=Gcaud1662.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=702bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:64403..65104+ (Gracilaria caudata M_176_S67 male)
ATGACTCGGAAAGAAAGTTTTGATGAGGCACTACAGGATTTAGAAGCCCG
TGTTGCAAAACTTGAGGCGAAGGAAAAAAATGTTGGCCGCAGAGCTGCGT
TAGGTAATGGaaatggacctccagaggcggtggacgcattcgcgaaccac
attcgtgttctcgctctatctgctggcttcagagatgtaagattggtgag
atgtccggacccgtactacagctggactcttgagaagcGCCGGGCATATC
TCAATGCCCCTGCAATTGCTCATCTTACAAAATCTATTGTGATGGAGAAC
ACTCGACATGAAGGTCACTCAGATCCATCACACCCAACAACATCACGATA
CCTCTGTTGCGTTGTTCCATACTATGCGAAAATAGATTCCGATAAGCTTC
GGGCAGCAATTCGTTCCATGTTCCCTGGTCTTGGGTTGCCTACGCCGAGC
ATGAAAGCTTTCAATTATCGCTTAGGAGAAGACTGCATTAGAGTAACTGG
ATATGTTCCAAACGGTGTCACTCCGCTAGGTCTCTTGACGCCTATGCCAG
TTGTTGTCGCAAAGCAGATCACGGAGTTGAGTCCGGAGGAGTTCTGGCTG
GGCGCAGGGGAAGTGTCCTTGAAATGGCGCGTGCGAATTCCAGAGTTCTT
CAGTGCCTTTAACCCGTTTGTCATTGACTTTGTCAACAAAGAAGATAGCT
GA