Gcaud218.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud218.t1
Unique NameGcaud218.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3492_length_3367_cov_6.498474contigNODE_3492_length_3367_cov_6.498474:2568..3020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud218Gcaud218Gracilaria caudata M_176_S67 malegeneNODE_3492_length_3367_cov_6.498474 2568..3020 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud218.t1.stop1Gcaud218.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3492_length_3367_cov_6.498474 2568..2570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud218.t1.CDS1Gcaud218.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3492_length_3367_cov_6.498474 2568..3020 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud218.t1.exon1Gcaud218.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3492_length_3367_cov_6.498474 2568..3020 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud218.t1.start1Gcaud218.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3492_length_3367_cov_6.498474 3018..3020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud218.t1Gcaud218.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3492_length_3367_cov_6.498474 2568..3020 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud218.t1 ID=Gcaud218.t1|Name=Gcaud218.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=151bp
MIGILSVCFTAFAASFAIGTQIYRVSNNDSCSSRSLSSSKTKKREEMDIL
LRNNHWNILSEREILRQFFERLGALQKQDPLCAEDVHSLVRRVNDSEHAR
EEYVWELEEELGSLRKELSDREFLFKELANEHIRCLEMIGVKMEKPRNGE
*
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spliced messenger RNA

>Gcaud218.t1 ID=Gcaud218.t1|Name=Gcaud218.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp|location=Sequence derived from alignment at NODE_3492_length_3367_cov_6.498474:2568..3020- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGGCATTCTTTCTGTTTGTTTCACAGCTTTTGCCGCATCCTTCGC
CATTGGTACTCAGATATACAGAGTGAGTAACAACGATTCGTGCTCCAGCC
GCTCTTTGTCGTCATCAAAGACGAAGAAGAGAGAAGAAATGGATATTCTT
CTCCGAAACAATCATTGGAACATTCTGTCGGAACGGGAGATTCTTCGGCA
GTTTTTTGAAAGGTTAGGAGCTCTGCAGAAACAGGACCCTCTGTGTGCTG
AGGATGTACATTCTCTTGTGAGAAGGGTTAATGACTCTGAGCACGCCAGA
GAAGAATATGTGTGGGAGCTGGAAGAGGAACTGGGATCACTTCGAAAGGA
GCTCAGTGACAGAGAATTCCTTTTTAAGGAACTGGCAAACGAACATATTC
GATGTTTAGAAATGATTGGGGTCAAAATGGAAAAGCCAAGGAACGGCGAG
TGA
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protein sequence of Gcaud218.t1

>Gcaud218.t1 ID=Gcaud218.t1|Name=Gcaud218.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=151bp
MIGILSVCFTAFAASFAIGTQIYRVSNNDSCSSRSLSSSKTKKREEMDIL
LRNNHWNILSEREILRQFFERLGALQKQDPLCAEDVHSLVRRVNDSEHAR
EEYVWELEEELGSLRKELSDREFLFKELANEHIRCLEMIGVKMEKPRNGE
*
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mRNA from alignment at NODE_3492_length_3367_cov_6.498474:2568..3020-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud218.t1 ID=Gcaud218.t1|Name=Gcaud218.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp|location=Sequence derived from alignment at NODE_3492_length_3367_cov_6.498474:2568..3020- (Gracilaria caudata M_176_S67 male)
ATGATTGGCATTCTTTCTGTTTGTTTCACAGCTTTTGCCGCATCCTTCGC
CATTGGTACTCAGATATACAGAGTGAGTAACAACGATTCGTGCTCCAGCC
GCTCTTTGTCGTCATCAAAGACGAAGAAGAGAGAAGAAATGGATATTCTT
CTCCGAAACAATCATTGGAACATTCTGTCGGAACGGGAGATTCTTCGGCA
GTTTTTTGAAAGGTTAGGAGCTCTGCAGAAACAGGACCCTCTGTGTGCTG
AGGATGTACATTCTCTTGTGAGAAGGGTTAATGACTCTGAGCACGCCAGA
GAAGAATATGTGTGGGAGCTGGAAGAGGAACTGGGATCACTTCGAAAGGA
GCTCAGTGACAGAGAATTCCTTTTTAAGGAACTGGCAAACGAACATATTC
GATGTTTAGAAATGATTGGGGTCAAAATGGAAAAGCCAAGGAACGGCGAG
TGA
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Coding sequence (CDS) from alignment at NODE_3492_length_3367_cov_6.498474:2568..3020-

>Gcaud218.t1 ID=Gcaud218.t1|Name=Gcaud218.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=453bp|location=Sequence derived from alignment at NODE_3492_length_3367_cov_6.498474:2568..3020- (Gracilaria caudata M_176_S67 male)
ATGATTGGCATTCTTTCTGTTTGTTTCACAGCTTTTGCCGCATCCTTCGC
CATTGGTACTCAGATATACAGAGTGAGTAACAACGATTCGTGCTCCAGCC
GCTCTTTGTCGTCATCAAAGACGAAGAAGAGAGAAGAAATGGATATTCTT
CTCCGAAACAATCATTGGAACATTCTGTCGGAACGGGAGATTCTTCGGCA
GTTTTTTGAAAGGTTAGGAGCTCTGCAGAAACAGGACCCTCTGTGTGCTG
AGGATGTACATTCTCTTGTGAGAAGGGTTAATGACTCTGAGCACGCCAGA
GAAGAATATGTGTGGGAGCTGGAAGAGGAACTGGGATCACTTCGAAAGGA
GCTCAGTGACAGAGAATTCCTTTTTAAGGAACTGGCAAACGAACATATTC
GATGTTTAGAAATGATTGGGGTCAAAATGGAAAAGCCAAGGAACGGCGAG
TGA
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