Gcaud8330.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8330.t1
Unique Name	Gcaud8330.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	289

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_345_length_29203_cov_4.997492	contig	NODE_345_length_29203_cov_4.997492:25165..26031 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8330	Gcaud8330	Gracilaria caudata M_176_S67 male	gene	NODE_345_length_29203_cov_4.997492 25165..26031 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8330.t1.stop1	Gcaud8330.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_345_length_29203_cov_4.997492 25165..25167 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8330.t1.CDS1	Gcaud8330.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_345_length_29203_cov_4.997492 25165..26031 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8330.t1.exon1	Gcaud8330.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_345_length_29203_cov_4.997492 25165..26031 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8330.t1.start1	Gcaud8330.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_345_length_29203_cov_4.997492 26029..26031 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8330.t1	Gcaud8330.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_345_length_29203_cov_4.997492 25165..26031 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_345_length_29203_cov_4.997492:25165..26031-
coding sequence from alignment at NODE_345_length_29203_cov_4.997492:25165..26031-

mRNA sequence

>Gcaud8330.t1 ID=Gcaud8330.t1|Name=Gcaud8330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=289bp
MTSSTKNANGRRAKHAQQRRGSAPAQPSSLEHSLRALNAKLIARLRASEA
VAADAVAARTAAQQALQTAQRGRKSVDDSLGELGAQRDALESERDQLRLN
CEQLQSNVEQLTQRVDDVSDQLRDAADECERLTKLQRDATDRCEALEKQL
LDGKNKLDAERALVTSLERQLQQHTMTGAKGAASMSPHSYSSIDTGDTLR
SDTCVSATGAEHTSVPVHDECDSAVAEDDCHALVRDVDGGAATSGRFAAV
SGFLEAVWRWGADLVAKLLSLFATPRAARSENVPLLRA*

spliced messenger RNA

>Gcaud8330.t1 ID=Gcaud8330.t1|Name=Gcaud8330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=867bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:25165..26031- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCCTCCACGAAGAACGCCAATGGCAGACGCGCCAAACACGCGCA
GCAACGACGAGGAAGCGCGCCCGCACAGCCGTCGTCGTTGGAACATAGCT
TGCGCGCGCTGAATGCAAAGCTCATCGCGAGGTTGAGGGCGTCTGAGGCG
GTTGCTGCGGACGCGGTGGCGGCTAGAACGGCGGCGCAGCAGGCGTTGCA
GACGGCGCAGCGAGGCAGGAAGTCTGTGGACGATTCGTTGGGCGAGCTTG
GCGCGCAGAGGGATGCGTTGGAAAGTGAACGTGACCAACTGCGATTGAAC
TGCGAACAGTTGCAGAGCAATGTGGAGCAACTCACGCAACGTGTGGATGA
TGTGAGTGATCAACTGCGCGATGCTGCCGATGAATGTGAACGATTGACAA
AGCTGCAGCGCGATGCCACAGATAGATGTGAGGCGTTGGAGAAACAGCTG
CTGGATGGCAAGAACAAATTGGATGCCGAACGCGCGCTGGTCACGTCTCT
TGAGCGTCAGCTGCAACAACACACCATGACGGGCGCAAAGGGAGCGGCTT
CCATGTCGCCGCACAGTTATTCCAGCATCGATACGGGCGACACGCTGAGA
AGCGACACCTGTGTGAGCGCCACTGGCGCGGAACACACGTCTGTGCCCGT
GCACGACGAATGTGACAGCGCGGTAGCCGAGGACGATTGCCACGCGCTTG
TGCGCGACGTGGATGGCGGAGCTGCCACTTCTGGGCGCTTCGCGGCGGTC
AGCGGCTTCTTGGAGGCCGTGTGGAGATGGGGCGCCGATCTTGTGGCAAA
GCTGCTGTCGCTGTTTGCTACACCGCGTGCGGCGCGGAGTGAGAACGTGC
CGCTTCTACGCGCGTAG

protein sequence of Gcaud8330.t1

>Gcaud8330.t1 ID=Gcaud8330.t1|Name=Gcaud8330.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=289bp
MTSSTKNANGRRAKHAQQRRGSAPAQPSSLEHSLRALNAKLIARLRASEA
VAADAVAARTAAQQALQTAQRGRKSVDDSLGELGAQRDALESERDQLRLN
CEQLQSNVEQLTQRVDDVSDQLRDAADECERLTKLQRDATDRCEALEKQL
LDGKNKLDAERALVTSLERQLQQHTMTGAKGAASMSPHSYSSIDTGDTLR
SDTCVSATGAEHTSVPVHDECDSAVAEDDCHALVRDVDGGAATSGRFAAV
SGFLEAVWRWGADLVAKLLSLFATPRAARSENVPLLRA*

mRNA from alignment at NODE_345_length_29203_cov_4.997492:25165..26031-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8330.t1 ID=Gcaud8330.t1|Name=Gcaud8330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=867bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:25165..26031- (Gracilaria caudata M_176_S67 male)
ATGACCTCCTCCACGAAGAACGCCAATGGCAGACGCGCCAAACACGCGCA
GCAACGACGAGGAAGCGCGCCCGCACAGCCGTCGTCGTTGGAACATAGCT
TGCGCGCGCTGAATGCAAAGCTCATCGCGAGGTTGAGGGCGTCTGAGGCG
GTTGCTGCGGACGCGGTGGCGGCTAGAACGGCGGCGCAGCAGGCGTTGCA
GACGGCGCAGCGAGGCAGGAAGTCTGTGGACGATTCGTTGGGCGAGCTTG
GCGCGCAGAGGGATGCGTTGGAAAGTGAACGTGACCAACTGCGATTGAAC
TGCGAACAGTTGCAGAGCAATGTGGAGCAACTCACGCAACGTGTGGATGA
TGTGAGTGATCAACTGCGCGATGCTGCCGATGAATGTGAACGATTGACAA
AGCTGCAGCGCGATGCCACAGATAGATGTGAGGCGTTGGAGAAACAGCTG
CTGGATGGCAAGAACAAATTGGATGCCGAACGCGCGCTGGTCACGTCTCT
TGAGCGTCAGCTGCAACAACACACCATGACGGGCGCAAAGGGAGCGGCTT
CCATGTCGCCGCACAGTTATTCCAGCATCGATACGGGCGACACGCTGAGA
AGCGACACCTGTGTGAGCGCCACTGGCGCGGAACACACGTCTGTGCCCGT
GCACGACGAATGTGACAGCGCGGTAGCCGAGGACGATTGCCACGCGCTTG
TGCGCGACGTGGATGGCGGAGCTGCCACTTCTGGGCGCTTCGCGGCGGTC
AGCGGCTTCTTGGAGGCCGTGTGGAGATGGGGCGCCGATCTTGTGGCAAA
GCTGCTGTCGCTGTTTGCTACACCGCGTGCGGCGCGGAGTGAGAACGTGC
CGCTTCTACGCGCGTAG

Coding sequence (CDS) from alignment at NODE_345_length_29203_cov_4.997492:25165..26031-

>Gcaud8330.t1 ID=Gcaud8330.t1|Name=Gcaud8330.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=867bp|location=Sequence derived from alignment at NODE_345_length_29203_cov_4.997492:25165..26031- (Gracilaria caudata M_176_S67 male)
ATGACCTCCTCCACGAAGAACGCCAATGGCAGACGCGCCAAACACGCGCA
GCAACGACGAGGAAGCGCGCCCGCACAGCCGTCGTCGTTGGAACATAGCT
TGCGCGCGCTGAATGCAAAGCTCATCGCGAGGTTGAGGGCGTCTGAGGCG
GTTGCTGCGGACGCGGTGGCGGCTAGAACGGCGGCGCAGCAGGCGTTGCA
GACGGCGCAGCGAGGCAGGAAGTCTGTGGACGATTCGTTGGGCGAGCTTG
GCGCGCAGAGGGATGCGTTGGAAAGTGAACGTGACCAACTGCGATTGAAC
TGCGAACAGTTGCAGAGCAATGTGGAGCAACTCACGCAACGTGTGGATGA
TGTGAGTGATCAACTGCGCGATGCTGCCGATGAATGTGAACGATTGACAA
AGCTGCAGCGCGATGCCACAGATAGATGTGAGGCGTTGGAGAAACAGCTG
CTGGATGGCAAGAACAAATTGGATGCCGAACGCGCGCTGGTCACGTCTCT
TGAGCGTCAGCTGCAACAACACACCATGACGGGCGCAAAGGGAGCGGCTT
CCATGTCGCCGCACAGTTATTCCAGCATCGATACGGGCGACACGCTGAGA
AGCGACACCTGTGTGAGCGCCACTGGCGCGGAACACACGTCTGTGCCCGT
GCACGACGAATGTGACAGCGCGGTAGCCGAGGACGATTGCCACGCGCTTG
TGCGCGACGTGGATGGCGGAGCTGCCACTTCTGGGCGCTTCGCGGCGGTC
AGCGGCTTCTTGGAGGCCGTGTGGAGATGGGGCGCCGATCTTGTGGCAAA
GCTGCTGTCGCTGTTTGCTACACCGCGTGCGGCGCGGAGTGAGAACGTGC
CGCTTCTACGCGCGTAG