Gcaud1782.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1782.t1
Unique Name	Gcaud1782.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_338_length_29361_cov_4.567031	contig	NODE_338_length_29361_cov_4.567031:20047..20922 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1782	Gcaud1782	Gracilaria caudata M_176_S67 male	gene	NODE_338_length_29361_cov_4.567031 20047..20922 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1782.t1	Gcaud1782.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_338_length_29361_cov_4.567031 20047..20922 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1782.t1.stop1	Gcaud1782.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_338_length_29361_cov_4.567031 20047..20049 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1782.t1.CDS1	Gcaud1782.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_338_length_29361_cov_4.567031 20047..20426 -
Gcaud1782.t1.CDS2	Gcaud1782.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_338_length_29361_cov_4.567031 20529..20922 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1782.t1.exon1	Gcaud1782.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_338_length_29361_cov_4.567031 20047..20426 -
Gcaud1782.t1.exon2	Gcaud1782.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_338_length_29361_cov_4.567031 20529..20922 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1782.t1.intron1	Gcaud1782.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_338_length_29361_cov_4.567031 20427..20528 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1782.t1.start1	Gcaud1782.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_338_length_29361_cov_4.567031 20920..20922 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_338_length_29361_cov_4.567031:20047..20922-
coding sequence from alignment at NODE_338_length_29361_cov_4.567031:20047..20922-

mRNA sequence

>Gcaud1782.t1 ID=Gcaud1782.t1|Name=Gcaud1782.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MEIVVATSILAHIGVLTIDRFASRFDAALHRPRDDALSPTALSSQTESET
HPEPLPSSPQEPQNAEENTQQGPDGHSPPEAVDEDSVQFLQQRLNELRNQ
AKKLNTPDTLVQYARVTREANKVEKTLEEKKAEQGLTASTSMGVDAMTSA
LAEMLKPGAQAVRQGFATQMLRMVPRIIAFIFLWYYFSWRDASARQGIVM
TVDCRALRPMSFLFRKMSPPCLDNDWVCAAEASQTPVCVISYPWALILCN
VVISLLF*

spliced messenger RNA

>Gcaud1782.t1 ID=Gcaud1782.t1|Name=Gcaud1782.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:20047..20922- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATCGTTGTAGCAACCAGCATCCTGGCACACATTGGTGTCCTCAC
CATCGATAGATTCGCGTCCAGATTTGACGCAGCCCTCCATCGCCCAAGGG
ATGATGCCCTCTCGCCTACCGCTCTTTCGTCTCAAACCGAATCCGAAACC
CACCCAGAGCCACTTCCCTCATCACCCCAAGAGCCTCAGAACGCCGAGGA
AAACACTCAACAAGGTCCTGATGGGCACTCACCACCAGAAGCAGTCGATG
AAGATAGCGTCCAATTCTTGCAGCAACGTCTTAACGAGCTGCGAAATCAA
GCAAAGAAACTCAATACGCCGGATACGCTTGTTCAGTACGCTCGTGTTAC
TCGAGAGGCAAACAAGGTTGAAAAGACTCTCGAAGAAAAGAAAGCGGAGC
AGGGATTAACTGCGTCAACGTCCATGGGAGTAGATGCTATGACAAGCGCG
CTTGCTGAAATGCTTAAACCGGGAGCACAGGCTGTACGACAAGGCTTTGC
AACTCAGATGCTTAGAATGGTACCGAGGATAATTGCTTTCATATTTCTAT
GGTACTACTTTTCATGGAGAGACGCATCTGCGAGGCAAGGAATCGTAATG
ACCGTAGACTGCCGAGCTCTGAGACCTATGTCATTCCTCTTTCGAAAAAT
GTCACCCCCTTGTTTGGATAACGATTGGGTGTGCGCAGCTGAGGCGTCTC
AAACACCAGTCTGTGTCATTTCTTATCCTTGGGCGCTCATCTTGTGTAAC
GTTGTCATTTCTTTGCTTTTCTAA

protein sequence of Gcaud1782.t1

>Gcaud1782.t1 ID=Gcaud1782.t1|Name=Gcaud1782.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MEIVVATSILAHIGVLTIDRFASRFDAALHRPRDDALSPTALSSQTESET
HPEPLPSSPQEPQNAEENTQQGPDGHSPPEAVDEDSVQFLQQRLNELRNQ
AKKLNTPDTLVQYARVTREANKVEKTLEEKKAEQGLTASTSMGVDAMTSA
LAEMLKPGAQAVRQGFATQMLRMVPRIIAFIFLWYYFSWRDASARQGIVM
TVDCRALRPMSFLFRKMSPPCLDNDWVCAAEASQTPVCVISYPWALILCN
VVISLLF*

mRNA from alignment at NODE_338_length_29361_cov_4.567031:20047..20922-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1782.t1 ID=Gcaud1782.t1|Name=Gcaud1782.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=876bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:20047..20922- (Gracilaria caudata M_176_S67 male)
ATGGAGATCGTTGTAGCAACCAGCATCCTGGCACACATTGGTGTCCTCAC
CATCGATAGATTCGCGTCCAGATTTGACGCAGCCCTCCATCGCCCAAGGG
ATGATGCCCTCTCGCCTACCGCTCTTTCGTCTCAAACCGAATCCGAAACC
CACCCAGAGCCACTTCCCTCATCACCCCAAGAGCCTCAGAACGCCGAGGA
AAACACTCAACAAGGTCCTGATGGGCACTCACCACCAGAAGCAGTCGATG
AAGATAGCGTCCAATTCTTGCAGCAACGTCTTAACGAGCTGCGAAATCAA
GCAAAGAAACTCAATACGCCGGATACGCTTGTTCAGTACGCTCGTGTTAC
TCGAGAGGCAAACAAGGTTGAAAAGACTCTCGAAGAAAAGAAAGGTGTGT
TAACGAATGCATGATCCCCAAGGCAGCTATGCTCAGCCCCGAACAAATGA
GAACTGACCGTCAACTCTTTCCACTTTTTTATTACTTTCTGAACAGCGGA
GCAGGGATTAACTGCGTCAACGTCCATGGGAGTAGATGCTATGACAAGCG
CGCTTGCTGAAATGCTTAAACCGGGAGCACAGGCTGTACGACAAGGCTTT
GCAACTCAGATGCTTAGAATGGTACCGAGGATAATTGCTTTCATATTTCT
ATGGTACTACTTTTCATGGAGAGACGCATCTGCGAGGCAAGGAATCGTAA
TGACCGTAGACTGCCGAGCTCTGAGACCTATGTCATTCCTCTTTCGAAAA
ATGTCACCCCCTTGTTTGGATAACGATTGGGTGTGCGCAGCTGAGGCGTC
TCAAACACCAGTCTGTGTCATTTCTTATCCTTGGGCGCTCATCTTGTGTA
ACGTTGTCATTTCTTTGCTTTTCTAA

Coding sequence (CDS) from alignment at NODE_338_length_29361_cov_4.567031:20047..20922-

>Gcaud1782.t1 ID=Gcaud1782.t1|Name=Gcaud1782.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:20047..20922- (Gracilaria caudata M_176_S67 male)
ATGGAGATCGTTGTAGCAACCAGCATCCTGGCACACATTGGTGTCCTCAC
CATCGATAGATTCGCGTCCAGATTTGACGCAGCCCTCCATCGCCCAAGGG
ATGATGCCCTCTCGCCTACCGCTCTTTCGTCTCAAACCGAATCCGAAACC
CACCCAGAGCCACTTCCCTCATCACCCCAAGAGCCTCAGAACGCCGAGGA
AAACACTCAACAAGGTCCTGATGGGCACTCACCACCAGAAGCAGTCGATG
AAGATAGCGTCCAATTCTTGCAGCAACGTCTTAACGAGCTGCGAAATCAA
GCAAAGAAACTCAATACGCCGGATACGCTTGTTCAGTACGCTCGTGTTAC
TCGAGAGGCAAACAAGGTTGAAAAGACTCTCGAAGAAAAGAAAGCGGAGC
AGGGATTAACTGCGTCAACGTCCATGGGAGTAGATGCTATGACAAGCGCG
CTTGCTGAAATGCTTAAACCGGGAGCACAGGCTGTACGACAAGGCTTTGC
AACTCAGATGCTTAGAATGGTACCGAGGATAATTGCTTTCATATTTCTAT
GGTACTACTTTTCATGGAGAGACGCATCTGCGAGGCAAGGAATCGTAATG
ACCGTAGACTGCCGAGCTCTGAGACCTATGTCATTCCTCTTTCGAAAAAT
GTCACCCCCTTGTTTGGATAACGATTGGGTGTGCGCAGCTGAGGCGTCTC
AAACACCAGTCTGTGTCATTTCTTATCCTTGGGCGCTCATCTTGTGTAAC
GTTGTCATTTCTTTGCTTTTCTAA