Gcaud1785.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1785.t1
Unique Name	Gcaud1785.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	475

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_338_length_29361_cov_4.567031	contig	NODE_338_length_29361_cov_4.567031:26783..28207 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7209.EJD76726.1
Preferred name	STK24
PFAMs	DUF1241,Pkinase
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K08838
GOs	GO:0000139,GO:0000165,GO:0000166,GO:0000185,GO:0000287,GO:0000302,GO:0000902,GO:0001932,GO:0001933,GO:0001934,GO:0002009,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006979,GO:0006996,GO:0007030,GO:0007043,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008349,GO:0008631,GO:0009267,GO:0009605,GO:0009636,GO:0009653,GO:0009887,GO:0009888,GO:0009892,GO:0009893,GO:0009898,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010035,GO:0010256,GO:0010421,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010769,GO:0010770,GO:0010941,GO:0010975,GO:0010976,GO:0012501,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019991,GO:0022008,GO:0022603,GO:0022604,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030033,GO:0030154,GO:0030182,GO:0030334,GO:0030336,GO:0030554,GO:0031090,GO:0031098,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032101,GO:0032103,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032528,GO:0032553,GO:0032555,GO:0032559,GO:0032872,GO:0032874,GO:0032879,GO:0032989,GO:0032990,GO:0033043,GO:0033554,GO:0033673,GO:0033674,GO:0034329,GO:0034330,GO:0034599,GO:0034614,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0036473,GO:0036474,GO:0036481,GO:0040012,GO:0040013,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042493,GO:0042542,GO:0042594,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043086,GO:0043087,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043297,GO:0043405,GO:0043406,GO:0043407,GO:0043408,GO:0043409,GO:0043410,GO:0043412,GO:0043547,GO:0043549,GO:0043900,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045216,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045859,GO:0045860,GO:0045936,GO:0045937,GO:0046677,GO:0046777,GO:0046872,GO:0046983,GO:0048308,GO:0048313,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048679,GO:0048680,GO:0048699,GO:0048729,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051019,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051270,GO:0051271,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051348,GO:0051640,GO:0051641,GO:0051645,GO:0051649,GO:0051656,GO:0051683,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0060255,GO:0060281,GO:0060284,GO:0060341,GO:0060429,GO:0060438,GO:0060439,GO:0060541,GO:0060548,GO:0060562,GO:0060627,GO:0065007,GO:0065009,GO:0070013,GO:0070301,GO:0070302,GO:0070304,GO:0070570,GO:0070572,GO:0070887,GO:0071236,GO:0071496,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0071902,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090168,GO:0097159,GO:0097190,GO:0097193,GO:0097194,GO:0097237,GO:0097367,GO:0097468,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098592,GO:0098791,GO:0120031,GO:0120035,GO:0120036,GO:0120039,GO:0140096,GO:1900407,GO:1901031,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:1902533,GO:1902882,GO:1903034,GO:1903036,GO:1903201,GO:1903205,GO:1903358,GO:1905879,GO:2000026,GO:2000145,GO:2000146,GO:2000241,GO:2001023,GO:2001038,GO:2001135,GO:2001137
Evalue	4.01e-102
EggNOG OGs	KOG0201@1\|root,KOG0201@2759\|Eukaryota,38G1B@33154\|Opisthokonta,3BA42@33208\|Metazoa,3CTF2@33213\|Bilateria,40BNW@6231\|Nematoda,1KU1J@119089\|Chromadorea
EC	2.7.11.1
Description	Protein tyrosine kinase
COG category	T
BRITE	ko00000,ko01000,ko01001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1785	Gcaud1785	Gracilaria caudata M_176_S67 male	gene	NODE_338_length_29361_cov_4.567031 26783..28207 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1785.t1.stop1	Gcaud1785.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_338_length_29361_cov_4.567031 26783..26785 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1785.t1.CDS1	Gcaud1785.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_338_length_29361_cov_4.567031 26783..28207 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1785.t1.exon1	Gcaud1785.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_338_length_29361_cov_4.567031 26783..28207 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1785.t1.start1	Gcaud1785.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_338_length_29361_cov_4.567031 28205..28207 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1785.t1	Gcaud1785.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_338_length_29361_cov_4.567031 26783..28207 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_338_length_29361_cov_4.567031:26783..28207-
coding sequence from alignment at NODE_338_length_29361_cov_4.567031:26783..28207-

mRNA sequence

>Gcaud1785.t1 ID=Gcaud1785.t1|Name=Gcaud1785.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=475bp
MADMFEKLECIGKGSFGEVFKGREISTGKIVALKLVDLEKMDEEIDVIQR
EIEVMRQISNPYVVQYYTSLMEGSTLWIVMEYMSAGSLKELIDKVGPLPE
EAIATVMKALCRGLDYVHRGSKLHRDIKAANILLSDNGEVKLADFGVAGQ
MTTTVRQRNTFVGSPFWMAPEVVEKSLYDEKADIWSIGITGIELANGLPP
YATEHPFRALFLIPKNPPPRVEGSHFSDSFKDFIALCLKKNPIERPSAEQ
LLHHSFLRKARSRSIKELIRQSQQVSGEVGGRVVIGGDSITEFPDSTLGN
SQKEEEKSESREKIWEFDFGSLTESKQDGESKSDAAQTDKEKKNSPSSAK
HSQTGDDQKVGSPKTTSPAERSTVERTEASVATNEPSQSEILSELILPVI
SRIRADEVTGGNRNSLLTASLGALEVAFVDVESSRPGFSRVLLECLFKET
LHSNLPEANSLVKRVLQQSRANGT*

spliced messenger RNA

>Gcaud1785.t1 ID=Gcaud1785.t1|Name=Gcaud1785.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:26783..28207- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATATGTTCGAGAAATTGGAGTGCATCGGCAAGGGCTCTTTTGG
AGAAGTTTTCAAGGGCCGAGAGATATCTACTGGTAAGATCGTCGCTTTAA
AACTCGTCGACTTGGAGAAAATGGATGAGGAGATAGACGTCATTCAGCGC
GAGATCGAAGTTATGCGTCAAATATCAAATCCGTATGTTGTTCAGTACTA
TACTTCTTTAATGGAAGGTTCTACTCTATGGATTGTTATGGAGTATATGT
CGGCGGGCTCGTTGAAGGAGCTCATTGACAAGGTCGGTCCTCTGCCAGAA
GAGGCAATTGCTACTGTCATGAAGGCGCTCTGTCGAGGCTTGGATTATGT
TCACAGAGGAAGCAAGCTTCATCGCGACATCAAAGCGGCTAACATTTTGC
TTAGTGATAACGGAGAGGTTAAGCTTGCTGATTTTGGCGTGGCGGGGCAA
ATGACGACAACAGTTCGACAGCGCAATACGTTCGTTGGCTCCCCATTTTG
GATGGCACCCGAAGTTGTTGAGAAGAGCCTTTACGATGAAAAGGCGGATA
TATGGTCTATCGGTATTACGGGAATTGAGTTAGCGAATGGTTTACCGCCT
TACGCCACGGAGCATCCGTTTCGAGCTTTGTTCTTGATTCCAAAAAATCC
ACCTCCTCGCGTTGAAGGAAGTCACTTCTCGGACTCTTTCAAAGACTTTA
TCGCTCTATGTTTAAAGAAGAACCCAATCGAGAGACCGAGTGCTGAACAA
CTATTACATCATTCCTTTCTACGAAAAGCCCGTTCTAGGTCAATCAAAGA
ACTGATCCGGCAAAGTCAGCAGGTATCTGGTGAAGTAGGAGGAAGGGTGG
TCATCGGGGGAGATTCCATCACTGAATTTCCGGATTCAACATTGGGCAAC
TCACAAAAAGAAGAGGAAAAAAGCGAGTCAAGAGAGAAGATATGGGAATT
TGACTTCGGGTCACTGACTGAGTCCAAGCAGGACGGTGAATCTAAAAGTG
ACGCGGCTCAAACCGACAAGGAAAAAAAGAATAGCCCATCTTCAGCTAAA
CATAGTCAGACTGGAGATGATCAAAAAGTTGGAAGTCCGAAGACCACAAG
CCCAGCAGAACGAAGCACAGTTGAAAGAACGGAAGCCTCCGTCGCAACTA
ATGAACCTTCGCAGAGCGAGATTCTTTCAGAGCTCATACTTCCTGTCATA
TCCCGCATTAGAGCTGACGAGGTGACGGGTGGCAATCGTAACAGTCTTTT
GACAGCCAGCCTTGGGGCCCTAGAAGTCGCTTTTGTTGACGTTGAAAGTT
CCCGGCCTGGATTCTCACGCGTACTTCTGGAGTGTTTGTTCAAGGAGACC
CTGCATTCGAATTTGCCGGAGGCTAACTCACTTGTGAAGCGTGTACTTCA
GCAGTCACGGGCGAACGGAACATGA

protein sequence of Gcaud1785.t1

>Gcaud1785.t1 ID=Gcaud1785.t1|Name=Gcaud1785.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MADMFEKLECIGKGSFGEVFKGREISTGKIVALKLVDLEKMDEEIDVIQR
EIEVMRQISNPYVVQYYTSLMEGSTLWIVMEYMSAGSLKELIDKVGPLPE
EAIATVMKALCRGLDYVHRGSKLHRDIKAANILLSDNGEVKLADFGVAGQ
MTTTVRQRNTFVGSPFWMAPEVVEKSLYDEKADIWSIGITGIELANGLPP
YATEHPFRALFLIPKNPPPRVEGSHFSDSFKDFIALCLKKNPIERPSAEQ
LLHHSFLRKARSRSIKELIRQSQQVSGEVGGRVVIGGDSITEFPDSTLGN
SQKEEEKSESREKIWEFDFGSLTESKQDGESKSDAAQTDKEKKNSPSSAK
HSQTGDDQKVGSPKTTSPAERSTVERTEASVATNEPSQSEILSELILPVI
SRIRADEVTGGNRNSLLTASLGALEVAFVDVESSRPGFSRVLLECLFKET
LHSNLPEANSLVKRVLQQSRANGT*

mRNA from alignment at NODE_338_length_29361_cov_4.567031:26783..28207-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1785.t1 ID=Gcaud1785.t1|Name=Gcaud1785.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:26783..28207- (Gracilaria caudata M_176_S67 male)
ATGGCTGATATGTTCGAGAAATTGGAGTGCATCGGCAAGGGCTCTTTTGG
AGAAGTTTTCAAGGGCCGAGAGATATCTACTGGTAAGATCGTCGCTTTAA
AACTCGTCGACTTGGAGAAAATGGATGAGGAGATAGACGTCATTCAGCGC
GAGATCGAAGTTATGCGTCAAATATCAAATCCGTATGTTGTTCAGTACTA
TACTTCTTTAATGGAAGGTTCTACTCTATGGATTGTTATGGAGTATATGT
CGGCGGGCTCGTTGAAGGAGCTCATTGACAAGGTCGGTCCTCTGCCAGAA
GAGGCAATTGCTACTGTCATGAAGGCGCTCTGTCGAGGCTTGGATTATGT
TCACAGAGGAAGCAAGCTTCATCGCGACATCAAAGCGGCTAACATTTTGC
TTAGTGATAACGGAGAGGTTAAGCTTGCTGATTTTGGCGTGGCGGGGCAA
ATGACGACAACAGTTCGACAGCGCAATACGTTCGTTGGCTCCCCATTTTG
GATGGCACCCGAAGTTGTTGAGAAGAGCCTTTACGATGAAAAGGCGGATA
TATGGTCTATCGGTATTACGGGAATTGAGTTAGCGAATGGTTTACCGCCT
TACGCCACGGAGCATCCGTTTCGAGCTTTGTTCTTGATTCCAAAAAATCC
ACCTCCTCGCGTTGAAGGAAGTCACTTCTCGGACTCTTTCAAAGACTTTA
TCGCTCTATGTTTAAAGAAGAACCCAATCGAGAGACCGAGTGCTGAACAA
CTATTACATCATTCCTTTCTACGAAAAGCCCGTTCTAGGTCAATCAAAGA
ACTGATCCGGCAAAGTCAGCAGGTATCTGGTGAAGTAGGAGGAAGGGTGG
TCATCGGGGGAGATTCCATCACTGAATTTCCGGATTCAACATTGGGCAAC
TCACAAAAAGAAGAGGAAAAAAGCGAGTCAAGAGAGAAGATATGGGAATT
TGACTTCGGGTCACTGACTGAGTCCAAGCAGGACGGTGAATCTAAAAGTG
ACGCGGCTCAAACCGACAAGGAAAAAAAGAATAGCCCATCTTCAGCTAAA
CATAGTCAGACTGGAGATGATCAAAAAGTTGGAAGTCCGAAGACCACAAG
CCCAGCAGAACGAAGCACAGTTGAAAGAACGGAAGCCTCCGTCGCAACTA
ATGAACCTTCGCAGAGCGAGATTCTTTCAGAGCTCATACTTCCTGTCATA
TCCCGCATTAGAGCTGACGAGGTGACGGGTGGCAATCGTAACAGTCTTTT
GACAGCCAGCCTTGGGGCCCTAGAAGTCGCTTTTGTTGACGTTGAAAGTT
CCCGGCCTGGATTCTCACGCGTACTTCTGGAGTGTTTGTTCAAGGAGACC
CTGCATTCGAATTTGCCGGAGGCTAACTCACTTGTGAAGCGTGTACTTCA
GCAGTCACGGGCGAACGGAACATGA

Coding sequence (CDS) from alignment at NODE_338_length_29361_cov_4.567031:26783..28207-

>Gcaud1785.t1 ID=Gcaud1785.t1|Name=Gcaud1785.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1425bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:26783..28207- (Gracilaria caudata M_176_S67 male)
ATGGCTGATATGTTCGAGAAATTGGAGTGCATCGGCAAGGGCTCTTTTGG
AGAAGTTTTCAAGGGCCGAGAGATATCTACTGGTAAGATCGTCGCTTTAA
AACTCGTCGACTTGGAGAAAATGGATGAGGAGATAGACGTCATTCAGCGC
GAGATCGAAGTTATGCGTCAAATATCAAATCCGTATGTTGTTCAGTACTA
TACTTCTTTAATGGAAGGTTCTACTCTATGGATTGTTATGGAGTATATGT
CGGCGGGCTCGTTGAAGGAGCTCATTGACAAGGTCGGTCCTCTGCCAGAA
GAGGCAATTGCTACTGTCATGAAGGCGCTCTGTCGAGGCTTGGATTATGT
TCACAGAGGAAGCAAGCTTCATCGCGACATCAAAGCGGCTAACATTTTGC
TTAGTGATAACGGAGAGGTTAAGCTTGCTGATTTTGGCGTGGCGGGGCAA
ATGACGACAACAGTTCGACAGCGCAATACGTTCGTTGGCTCCCCATTTTG
GATGGCACCCGAAGTTGTTGAGAAGAGCCTTTACGATGAAAAGGCGGATA
TATGGTCTATCGGTATTACGGGAATTGAGTTAGCGAATGGTTTACCGCCT
TACGCCACGGAGCATCCGTTTCGAGCTTTGTTCTTGATTCCAAAAAATCC
ACCTCCTCGCGTTGAAGGAAGTCACTTCTCGGACTCTTTCAAAGACTTTA
TCGCTCTATGTTTAAAGAAGAACCCAATCGAGAGACCGAGTGCTGAACAA
CTATTACATCATTCCTTTCTACGAAAAGCCCGTTCTAGGTCAATCAAAGA
ACTGATCCGGCAAAGTCAGCAGGTATCTGGTGAAGTAGGAGGAAGGGTGG
TCATCGGGGGAGATTCCATCACTGAATTTCCGGATTCAACATTGGGCAAC
TCACAAAAAGAAGAGGAAAAAAGCGAGTCAAGAGAGAAGATATGGGAATT
TGACTTCGGGTCACTGACTGAGTCCAAGCAGGACGGTGAATCTAAAAGTG
ACGCGGCTCAAACCGACAAGGAAAAAAAGAATAGCCCATCTTCAGCTAAA
CATAGTCAGACTGGAGATGATCAAAAAGTTGGAAGTCCGAAGACCACAAG
CCCAGCAGAACGAAGCACAGTTGAAAGAACGGAAGCCTCCGTCGCAACTA
ATGAACCTTCGCAGAGCGAGATTCTTTCAGAGCTCATACTTCCTGTCATA
TCCCGCATTAGAGCTGACGAGGTGACGGGTGGCAATCGTAACAGTCTTTT
GACAGCCAGCCTTGGGGCCCTAGAAGTCGCTTTTGTTGACGTTGAAAGTT
CCCGGCCTGGATTCTCACGCGTACTTCTGGAGTGTTTGTTCAAGGAGACC
CTGCATTCGAATTTGCCGGAGGCTAACTCACTTGTGAAGCGTGTACTTCA
GCAGTCACGGGCGAACGGAACATGA