Gcaud3402.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3402.t1
Unique Name	Gcaud3402.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	471

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_100_length_51433_cov_4.606891	contig	NODE_100_length_51433_cov_4.606891:44400..45812 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005649919.1
PFAMs	Dus
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K05542
Evalue	3.61e-104
EggNOG OGs	COG0042@1\|root,KOG2335@2759\|Eukaryota,37NIH@33090\|Viridiplantae,34HHK@3041\|Chlorophyta
EC	1.3.1.88
Description	Dihydrouridine synthase (Dus)
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3402	Gcaud3402	Gracilaria caudata M_176_S67 male	gene	NODE_100_length_51433_cov_4.606891 44400..45812 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3402.t1.stop1	Gcaud3402.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_100_length_51433_cov_4.606891 44400..44402 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3402.t1.CDS1	Gcaud3402.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_100_length_51433_cov_4.606891 44400..45812 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3402.t1.exon1	Gcaud3402.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_100_length_51433_cov_4.606891 44400..45812 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3402.t1.start1	Gcaud3402.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_100_length_51433_cov_4.606891 45810..45812 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3402.t1	Gcaud3402.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_100_length_51433_cov_4.606891 44400..45812 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_100_length_51433_cov_4.606891:44400..45812-
coding sequence from alignment at NODE_100_length_51433_cov_4.606891:44400..45812-

mRNA sequence

>Gcaud3402.t1 ID=Gcaud3402.t1|Name=Gcaud3402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=471bp
MFGVARRTVRCGELKRFRGTNAASCHTWLGVGGAQLTSGSSIPLYVSTVR
MERQFGRFGSAAEKSAAINTAMHSPRLRIRALFFQTRRASTRLSVAPCSP
ERNDDAKMSRSQAWEHWRRLGSPRYIVAPMVDASELAFRDLCRKHGANLA
YTPMLHSASFERDARYRAEHFTTHQTDRPLVAQFCANNPHTFVAAAKLVQ
SKVDAVDLNLGCPQGIAKRGKYGAFLMDQLQLVRELVAKAAAELDVPVWV
KIRVFDDLNQTLEYATMLERAGASLIAVHGRTRDQKGRDCPPADWDKIRA
VVNAVNVPVIANGNVRTIEDADRAIQYTGAQAVMSAYALLDYPAVFSRGV
NVSRMQLANEYLQLAEKYNTPHRMVRLHLFKLFRSRLDANMDLNEAVAKC
RSYEQFRDVAQLIASRCDFDGVSFEQRIQRGDKVDNVVSAKKIERLKRKQ
LLQGGCTTDAQAATSLNSPT*

spliced messenger RNA

>Gcaud3402.t1 ID=Gcaud3402.t1|Name=Gcaud3402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:44400..45812- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGGTGTGGCGCGTCGAACAGTTCGCTGCGGAGAGCTCAAGCGATT
TCGGGGAACGAATGCAGCCTCATGCCACACATGGCTGGGCGTGGGTGGCG
CGCAGCTCACGTCTGGCTCGTCGATACCCTTGTACGTATCCACTGTGCGC
ATGGAGCGCCAATTTGGCCGATTTGGCTCGGCCGCCGAAAAATCGGCGGC
GATCAACACAGCGATGCACTCCCCGCGCCTGCGCATACGCGCGCTTTTCT
TTCAGACGCGTCGCGCTTCTACTCGTCTGTCCGTCGCGCCGTGCTCGCCC
GAACGCAACGACGACGCAAAAATGTCGCGCAGCCAAGCGTGGGAGCATTG
GAGGCGTCTGGGCAGTCCGAGGTATATCGTGGCGCCCATGGTGGACGCTT
CGGAGCTTGCGTTTCGTGACTTGTGTCGCAAGCATGGCGCCAATTTGGCG
TACACACCAATGTTACACTCAGCGTCTTTTGAACGCGATGCAAGGTATCG
GGCGGAGCACTTCACCACGCATCAGACCGATAGGCCGTTGGTGGCCCAGT
TCTGCGCGAATAACCCGCACACTTTTGTGGCGGCTGCGAAGTTGGTGCAG
AGCAAGGTGGACGCTGTTGACTTGAATCTTGGCTGTCCGCAGGGTATCGC
GAAACGTGGCAAGTACGGGGCGTTCTTGATGGACCAGCTGCAGCTTGTGA
GAGAACTTGTTGCGAAGGCTGCTGCTGAACTTGATGTTCCGGTGTGGGTG
AAGATTCGAGTGTTTGATGATTTGAATCAGACGCTTGAGTATGCAACAAT
GTTGGAACGTGCGGGCGCTTCTTTGATTGCGGTGCATGGAAGGACTAGAG
ATCAGAAGGGACGCGATTGTCCGCCGGCTGATTGGGATAAAATACGTGCT
GTTGTTAACGCCGTCAACGTTCCCGTCATAGCGAATGGCAATGTTCGTAC
CATTGAGGATGCTGACCGGGCAATTCAATACACAGGTGCTCAAGCCGTCA
TGTCTGCGTATGCGTTGCTTGACTATCCTGCCGTGTTTTCACGTGGTGTC
AATGTGAGCCGCATGCAGCTGGCCAATGAATACCTTCAGCTGGCCGAAAA
GTATAACACGCCACATCGAATGGTTCGACTTCATTTGTTCAAACTGTTCC
GTTCTAGATTGGACGCTAACATGGACTTGAATGAAGCTGTTGCCAAATGC
AGAAGCTATGAGCAGTTTAGAGATGTTGCTCAGTTGATTGCGTCAAGATG
CGATTTTGATGGCGTTAGTTTTGAACAGCGAATTCAACGTGGAGACAAGG
TTGATAATGTTGTATCTGCGAAGAAGATTGAACGCTTGAAACGGAAGCAG
CTGCTACAAGGAGGCTGTACTACGGACGCTCAGGCTGCCACTTCATTAAA
TTCTCCAACATAA

protein sequence of Gcaud3402.t1

>Gcaud3402.t1 ID=Gcaud3402.t1|Name=Gcaud3402.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=471bp
MFGVARRTVRCGELKRFRGTNAASCHTWLGVGGAQLTSGSSIPLYVSTVR
MERQFGRFGSAAEKSAAINTAMHSPRLRIRALFFQTRRASTRLSVAPCSP
ERNDDAKMSRSQAWEHWRRLGSPRYIVAPMVDASELAFRDLCRKHGANLA
YTPMLHSASFERDARYRAEHFTTHQTDRPLVAQFCANNPHTFVAAAKLVQ
SKVDAVDLNLGCPQGIAKRGKYGAFLMDQLQLVRELVAKAAAELDVPVWV
KIRVFDDLNQTLEYATMLERAGASLIAVHGRTRDQKGRDCPPADWDKIRA
VVNAVNVPVIANGNVRTIEDADRAIQYTGAQAVMSAYALLDYPAVFSRGV
NVSRMQLANEYLQLAEKYNTPHRMVRLHLFKLFRSRLDANMDLNEAVAKC
RSYEQFRDVAQLIASRCDFDGVSFEQRIQRGDKVDNVVSAKKIERLKRKQ
LLQGGCTTDAQAATSLNSPT*

mRNA from alignment at NODE_100_length_51433_cov_4.606891:44400..45812-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3402.t1 ID=Gcaud3402.t1|Name=Gcaud3402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:44400..45812- (Gracilaria caudata M_176_S67 male)
ATGTTTGGTGTGGCGCGTCGAACAGTTCGCTGCGGAGAGCTCAAGCGATT
TCGGGGAACGAATGCAGCCTCATGCCACACATGGCTGGGCGTGGGTGGCG
CGCAGCTCACGTCTGGCTCGTCGATACCCTTGTACGTATCCACTGTGCGC
ATGGAGCGCCAATTTGGCCGATTTGGCTCGGCCGCCGAAAAATCGGCGGC
GATCAACACAGCGATGCACTCCCCGCGCCTGCGCATACGCGCGCTTTTCT
TTCAGACGCGTCGCGCTTCTACTCGTCTGTCCGTCGCGCCGTGCTCGCCC
GAACGCAACGACGACGCAAAAATGTCGCGCAGCCAAGCGTGGGAGCATTG
GAGGCGTCTGGGCAGTCCGAGGTATATCGTGGCGCCCATGGTGGACGCTT
CGGAGCTTGCGTTTCGTGACTTGTGTCGCAAGCATGGCGCCAATTTGGCG
TACACACCAATGTTACACTCAGCGTCTTTTGAACGCGATGCAAGGTATCG
GGCGGAGCACTTCACCACGCATCAGACCGATAGGCCGTTGGTGGCCCAGT
TCTGCGCGAATAACCCGCACACTTTTGTGGCGGCTGCGAAGTTGGTGCAG
AGCAAGGTGGACGCTGTTGACTTGAATCTTGGCTGTCCGCAGGGTATCGC
GAAACGTGGCAAGTACGGGGCGTTCTTGATGGACCAGCTGCAGCTTGTGA
GAGAACTTGTTGCGAAGGCTGCTGCTGAACTTGATGTTCCGGTGTGGGTG
AAGATTCGAGTGTTTGATGATTTGAATCAGACGCTTGAGTATGCAACAAT
GTTGGAACGTGCGGGCGCTTCTTTGATTGCGGTGCATGGAAGGACTAGAG
ATCAGAAGGGACGCGATTGTCCGCCGGCTGATTGGGATAAAATACGTGCT
GTTGTTAACGCCGTCAACGTTCCCGTCATAGCGAATGGCAATGTTCGTAC
CATTGAGGATGCTGACCGGGCAATTCAATACACAGGTGCTCAAGCCGTCA
TGTCTGCGTATGCGTTGCTTGACTATCCTGCCGTGTTTTCACGTGGTGTC
AATGTGAGCCGCATGCAGCTGGCCAATGAATACCTTCAGCTGGCCGAAAA
GTATAACACGCCACATCGAATGGTTCGACTTCATTTGTTCAAACTGTTCC
GTTCTAGATTGGACGCTAACATGGACTTGAATGAAGCTGTTGCCAAATGC
AGAAGCTATGAGCAGTTTAGAGATGTTGCTCAGTTGATTGCGTCAAGATG
CGATTTTGATGGCGTTAGTTTTGAACAGCGAATTCAACGTGGAGACAAGG
TTGATAATGTTGTATCTGCGAAGAAGATTGAACGCTTGAAACGGAAGCAG
CTGCTACAAGGAGGCTGTACTACGGACGCTCAGGCTGCCACTTCATTAAA
TTCTCCAACATAA

Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:44400..45812-

>Gcaud3402.t1 ID=Gcaud3402.t1|Name=Gcaud3402.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1413bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:44400..45812- (Gracilaria caudata M_176_S67 male)
ATGTTTGGTGTGGCGCGTCGAACAGTTCGCTGCGGAGAGCTCAAGCGATT
TCGGGGAACGAATGCAGCCTCATGCCACACATGGCTGGGCGTGGGTGGCG
CGCAGCTCACGTCTGGCTCGTCGATACCCTTGTACGTATCCACTGTGCGC
ATGGAGCGCCAATTTGGCCGATTTGGCTCGGCCGCCGAAAAATCGGCGGC
GATCAACACAGCGATGCACTCCCCGCGCCTGCGCATACGCGCGCTTTTCT
TTCAGACGCGTCGCGCTTCTACTCGTCTGTCCGTCGCGCCGTGCTCGCCC
GAACGCAACGACGACGCAAAAATGTCGCGCAGCCAAGCGTGGGAGCATTG
GAGGCGTCTGGGCAGTCCGAGGTATATCGTGGCGCCCATGGTGGACGCTT
CGGAGCTTGCGTTTCGTGACTTGTGTCGCAAGCATGGCGCCAATTTGGCG
TACACACCAATGTTACACTCAGCGTCTTTTGAACGCGATGCAAGGTATCG
GGCGGAGCACTTCACCACGCATCAGACCGATAGGCCGTTGGTGGCCCAGT
TCTGCGCGAATAACCCGCACACTTTTGTGGCGGCTGCGAAGTTGGTGCAG
AGCAAGGTGGACGCTGTTGACTTGAATCTTGGCTGTCCGCAGGGTATCGC
GAAACGTGGCAAGTACGGGGCGTTCTTGATGGACCAGCTGCAGCTTGTGA
GAGAACTTGTTGCGAAGGCTGCTGCTGAACTTGATGTTCCGGTGTGGGTG
AAGATTCGAGTGTTTGATGATTTGAATCAGACGCTTGAGTATGCAACAAT
GTTGGAACGTGCGGGCGCTTCTTTGATTGCGGTGCATGGAAGGACTAGAG
ATCAGAAGGGACGCGATTGTCCGCCGGCTGATTGGGATAAAATACGTGCT
GTTGTTAACGCCGTCAACGTTCCCGTCATAGCGAATGGCAATGTTCGTAC
CATTGAGGATGCTGACCGGGCAATTCAATACACAGGTGCTCAAGCCGTCA
TGTCTGCGTATGCGTTGCTTGACTATCCTGCCGTGTTTTCACGTGGTGTC
AATGTGAGCCGCATGCAGCTGGCCAATGAATACCTTCAGCTGGCCGAAAA
GTATAACACGCCACATCGAATGGTTCGACTTCATTTGTTCAAACTGTTCC
GTTCTAGATTGGACGCTAACATGGACTTGAATGAAGCTGTTGCCAAATGC
AGAAGCTATGAGCAGTTTAGAGATGTTGCTCAGTTGATTGCGTCAAGATG
CGATTTTGATGGCGTTAGTTTTGAACAGCGAATTCAACGTGGAGACAAGG
TTGATAATGTTGTATCTGCGAAGAAGATTGAACGCTTGAAACGGAAGCAG
CTGCTACAAGGAGGCTGTACTACGGACGCTCAGGCTGCCACTTCATTAAA
TTCTCCAACATAA