Gcaud2159.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2159.t1
Unique Name	Gcaud2159.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	296

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3379_length_3547_cov_2.682002	contig	NODE_3379_length_3547_cov_2.682002:62..948 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2159	Gcaud2159	Gracilaria caudata M_176_S67 male	gene	NODE_3379_length_3547_cov_2.682002 62..948 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2159.t1.start1	Gcaud2159.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3379_length_3547_cov_2.682002 62..64 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2159.t1.CDS1	Gcaud2159.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3379_length_3547_cov_2.682002 62..948 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2159.t1.exon1	Gcaud2159.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3379_length_3547_cov_2.682002 62..948 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2159.t1	Gcaud2159.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3379_length_3547_cov_2.682002 62..948 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3379_length_3547_cov_2.682002:62..948+
coding sequence from alignment at NODE_3379_length_3547_cov_2.682002:62..948+

mRNA sequence

>Gcaud2159.t1 ID=Gcaud2159.t1|Name=Gcaud2159.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=296bp
MIAHYLAVPGVRDWLFNRNPPPSANALPLHTAFSYACMYYSPATAPRTPP
PYALPEPYLDFGDVLLWQHVYDGIAVGNLYNKKENHALAKVRDSVLHSSR
LSSRPRSRNFAADLRVDHLELVEFAWMDDHSLIVACRRLHKPAAAHHNRL
VLSCDLICYDVLPLHQPLLSSPLLTIVLRERPTVCQFCGVRGIEQCACPP
SFKNRAPAHAERAFSYASASSSQLSLHRPPISERPIEAWLSFCKRLFTFA
QSGSFFVEMYRHAENARTKLFYSPPHPVPYQFVCGDRSDTLQLLSL

spliced messenger RNA

>Gcaud2159.t1 ID=Gcaud2159.t1|Name=Gcaud2159.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=887bp|location=Sequence derived from alignment at NODE_3379_length_3547_cov_2.682002:62..948+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCGCACTATCTGGCCGTGCCCGGCGTGCGCGACTGGCTGTTCAA
CCGCAACCCGCCGCCGTCCGCAAACGCGCTGCCGCTGCACACCGCCTTCA
GCTACGCGTGCATGTACTACTCGCCGGCCACCGCGCCGCGCACCCCCCCA
CCGTACGCGCTGCCCGAGCCGTATCTGGACTTTGGCGACGTGCTGCTGTG
GCAGCACGTGTACGACGGCATCGCCGTGGGCAATCTGTACAACAAGAAGG
AGAATCACGCGCTGGCCAAGGTGCGCGACTCCGTGCTGCACTCCTCGCGC
CTGTCCAGTCGCCCGCGCTCGCGCAACTTTGCCGCCGACCTGCGCGTGGA
CCATCTGGAGCTGGTGGAGTTTGCGTGGATGGACGACCACAGTCTCATTG
TGGCGTGCAGAAGACTGCACAAACCGGCCGCGGCGCACCACAATCGGCTG
GTGTTGTCGTGCGACCTCATTTGCTACGACGTGTTGCCGCTGCATCAGCC
GCTGTTGTCATCGCCGCTGCTCACCATCGTGCTGCGCGAGCGCCCCACCG
TGTGCCAGTTCTGCGGCGTGCGCGGCATAGAGCAGTGCGCATGCCCGCCG
TCGTTCAAGAACCGTGCGCCGGCGCACGCGGAGCGCGCGTTCTCGTACGC
GAGCGCGTCGTCGTCGCAGCTGTCGTTGCATCGGCCGCCCATCTCGGAGC
GACCGATCGAGGCATGGCTGTCGTTTTGCAAGAGACTGTTCACGTTTGCT
CAGAGCGGCTCGTTCTTTGTGGAGATGTATCGTCACGCAGAGAACGCGCG
CACAAAGCTGTTCTACAGCCCGCCACACCCCGTGCCGTATCAGTTTGTGT
GCGGAGACCGCTCGGATACGCTACAGCTGCTCAGTCT

protein sequence of Gcaud2159.t1

>Gcaud2159.t1 ID=Gcaud2159.t1|Name=Gcaud2159.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=296bp
MIAHYLAVPGVRDWLFNRNPPPSANALPLHTAFSYACMYYSPATAPRTPP
PYALPEPYLDFGDVLLWQHVYDGIAVGNLYNKKENHALAKVRDSVLHSSR
LSSRPRSRNFAADLRVDHLELVEFAWMDDHSLIVACRRLHKPAAAHHNRL
VLSCDLICYDVLPLHQPLLSSPLLTIVLRERPTVCQFCGVRGIEQCACPP
SFKNRAPAHAERAFSYASASSSQLSLHRPPISERPIEAWLSFCKRLFTFA
QSGSFFVEMYRHAENARTKLFYSPPHPVPYQFVCGDRSDTLQLLSL

mRNA from alignment at NODE_3379_length_3547_cov_2.682002:62..948+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2159.t1 ID=Gcaud2159.t1|Name=Gcaud2159.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=887bp|location=Sequence derived from alignment at NODE_3379_length_3547_cov_2.682002:62..948+ (Gracilaria caudata M_176_S67 male)
ATGATCGCGCACTATCTGGCCGTGCCCGGCGTGCGCGACTGGCTGTTCAA
CCGCAACCCGCCGCCGTCCGCAAACGCGCTGCCGCTGCACACCGCCTTCA
GCTACGCGTGCATGTACTACTCGCCGGCCACCGCGCCGCGCACCCCCCCA
CCGTACGCGCTGCCCGAGCCGTATCTGGACTTTGGCGACGTGCTGCTGTG
GCAGCACGTGTACGACGGCATCGCCGTGGGCAATCTGTACAACAAGAAGG
AGAATCACGCGCTGGCCAAGGTGCGCGACTCCGTGCTGCACTCCTCGCGC
CTGTCCAGTCGCCCGCGCTCGCGCAACTTTGCCGCCGACCTGCGCGTGGA
CCATCTGGAGCTGGTGGAGTTTGCGTGGATGGACGACCACAGTCTCATTG
TGGCGTGCAGAAGACTGCACAAACCGGCCGCGGCGCACCACAATCGGCTG
GTGTTGTCGTGCGACCTCATTTGCTACGACGTGTTGCCGCTGCATCAGCC
GCTGTTGTCATCGCCGCTGCTCACCATCGTGCTGCGCGAGCGCCCCACCG
TGTGCCAGTTCTGCGGCGTGCGCGGCATAGAGCAGTGCGCATGCCCGCCG
TCGTTCAAGAACCGTGCGCCGGCGCACGCGGAGCGCGCGTTCTCGTACGC
GAGCGCGTCGTCGTCGCAGCTGTCGTTGCATCGGCCGCCCATCTCGGAGC
GACCGATCGAGGCATGGCTGTCGTTTTGCAAGAGACTGTTCACGTTTGCT
CAGAGCGGCTCGTTCTTTGTGGAGATGTATCGTCACGCAGAGAACGCGCG
CACAAAGCTGTTCTACAGCCCGCCACACCCCGTGCCGTATCAGTTTGTGT
GCGGAGACCGCTCGGATACGCTACAGCTGCTCAGTCT

Coding sequence (CDS) from alignment at NODE_3379_length_3547_cov_2.682002:62..948+

>Gcaud2159.t1 ID=Gcaud2159.t1|Name=Gcaud2159.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=887bp|location=Sequence derived from alignment at NODE_3379_length_3547_cov_2.682002:62..948+ (Gracilaria caudata M_176_S67 male)
ATGATCGCGCACTATCTGGCCGTGCCCGGCGTGCGCGACTGGCTGTTCAA
CCGCAACCCGCCGCCGTCCGCAAACGCGCTGCCGCTGCACACCGCCTTCA
GCTACGCGTGCATGTACTACTCGCCGGCCACCGCGCCGCGCACCCCCCCA
CCGTACGCGCTGCCCGAGCCGTATCTGGACTTTGGCGACGTGCTGCTGTG
GCAGCACGTGTACGACGGCATCGCCGTGGGCAATCTGTACAACAAGAAGG
AGAATCACGCGCTGGCCAAGGTGCGCGACTCCGTGCTGCACTCCTCGCGC
CTGTCCAGTCGCCCGCGCTCGCGCAACTTTGCCGCCGACCTGCGCGTGGA
CCATCTGGAGCTGGTGGAGTTTGCGTGGATGGACGACCACAGTCTCATTG
TGGCGTGCAGAAGACTGCACAAACCGGCCGCGGCGCACCACAATCGGCTG
GTGTTGTCGTGCGACCTCATTTGCTACGACGTGTTGCCGCTGCATCAGCC
GCTGTTGTCATCGCCGCTGCTCACCATCGTGCTGCGCGAGCGCCCCACCG
TGTGCCAGTTCTGCGGCGTGCGCGGCATAGAGCAGTGCGCATGCCCGCCG
TCGTTCAAGAACCGTGCGCCGGCGCACGCGGAGCGCGCGTTCTCGTACGC
GAGCGCGTCGTCGTCGCAGCTGTCGTTGCATCGGCCGCCCATCTCGGAGC
GACCGATCGAGGCATGGCTGTCGTTTTGCAAGAGACTGTTCACGTTTGCT
CAGAGCGGCTCGTTCTTTGTGGAGATGTATCGTCACGCAGAGAACGCGCG
CACAAAGCTGTTCTACAGCCCGCCACACCCCGTGCCGTATCAGTTTGTGT
GCGGAGACCGCTCGGATACGCTACAGCTGCTCAGTCT