Gcaud8108.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8108.t1
Unique Name	Gcaud8108.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	297

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_336_length_29381_cov_4.586787	contig	NODE_336_length_29381_cov_4.586787:10309..11199 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67281.JNZZ01000028_gene3027
PFAMs	Methyltransf_24
Max annot lvl	201174\|Actinobacteria
Evalue	3.51e-28
EggNOG OGs	COG4122@1\|root,COG4122@2\|Bacteria,2IC8Z@201174\|Actinobacteria
Description	Methyltransferase domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8108	Gcaud8108	Gracilaria caudata M_176_S67 male	gene	NODE_336_length_29381_cov_4.586787 10309..11199 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8108.t1.stop1	Gcaud8108.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_336_length_29381_cov_4.586787 10309..10311 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8108.t1.CDS1	Gcaud8108.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_336_length_29381_cov_4.586787 10309..11199 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8108.t1.exon1	Gcaud8108.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_336_length_29381_cov_4.586787 10309..11199 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8108.t1.start1	Gcaud8108.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_336_length_29381_cov_4.586787 11197..11199 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8108.t1	Gcaud8108.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_336_length_29381_cov_4.586787 10309..11199 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_336_length_29381_cov_4.586787:10309..11199-
coding sequence from alignment at NODE_336_length_29381_cov_4.586787:10309..11199-

mRNA sequence

>Gcaud8108.t1 ID=Gcaud8108.t1|Name=Gcaud8108.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=297bp
MGNGTKRNFLSEWKYVAFAICFLFGSCTYFGSTCLMISGQDVVVSQLQYV
YKKYMLEIEYLHDLSRKYCKRPGMYCLSDDYELEISYMRIRETRPKVIWE
ISPSHGYSTLWIMEALKANKNNGKLYSFDIHDAVVSASSKSWEKYGWNFV
LGDFKEQFLSNFKKYPTPDYLFLDSLHNEEFARFYTTSLFPKILEVKRSV
YVSLHDVYNPSFWADGPRSELRKEAKLPEWLPNEEGQVVLDWMVYNQHHV
SGVYTVAEAHNKTVSDIVKKVRDNTFTSRLSTHGSANPTLFFTLKA*

spliced messenger RNA

>Gcaud8108.t1 ID=Gcaud8108.t1|Name=Gcaud8108.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=891bp|location=Sequence derived from alignment at NODE_336_length_29381_cov_4.586787:10309..11199- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAACGGTACAAAAAGGAACTTTTTGTCCGAGTGGAAGTATGTGGC
TTTTGCGATTTGTTTTCTGTTTGGCTCTTGCACTTACTTCGGAAGCACTT
GTTTAATGATATCCGGTCAAGATGTCGTGGTTAGTCAGTTACAATATGTG
TACAAGAAGTATATGCTAGAAATAGAATATTTACATGACCTTTCAAGAAA
ATACTGCAAGAGACCAGGTATGTACTGCCTCTCCGATGACTACGAACTTG
AAATATCATATATGCGGATAAGAGAAACTCGTCCGAAAGTCATCTGGGAG
ATATCTCCGTCCCATGGTTACTCAACTCTGTGGATCATGGAAGCCTTAAA
AGCAAATAAGAACAACGGTAAATTGTACTCTTTCGACATTCATGACGCAG
TAGTTTCCGCATCGTCAAAGAGCTGGGAGAAATACGGTTGGAATTTTGTC
CTCGGAGACTTTAAAGAGCAGTTCTTAAGTAACTTCAAAAAGTACCCCAC
TCCGGACTATCTCTTCCTAGATAGTCTTCACAACGAGGAATTTGCAAGAT
TCTATACAACTAGTTTGTTTCCAAAGATATTAGAGGTAAAGCGATCAGTA
TATGTCTCTCTACATGATGTGTACAATCCCTCATTTTGGGCTGATGGACC
ACGTTCGGAGCTCAGGAAAGAAGCCAAACTTCCCGAATGGCTCCCAAATG
AAGAGGGTCAGGTTGTTCTCGACTGGATGGTGTACAACCAGCATCATGTT
AGTGGGGTATATACTGTAGCTGAAGCGCATAACAAAACTGTCTCTGATAT
TGTGAAGAAGGTCAGAGACAATACTTTTACCTCACGTTTGTCAACGCATG
GATCGGCAAACCCAACCCTATTCTTTACCCTAAAGGCATAA

protein sequence of Gcaud8108.t1

>Gcaud8108.t1 ID=Gcaud8108.t1|Name=Gcaud8108.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=297bp
MGNGTKRNFLSEWKYVAFAICFLFGSCTYFGSTCLMISGQDVVVSQLQYV
YKKYMLEIEYLHDLSRKYCKRPGMYCLSDDYELEISYMRIRETRPKVIWE
ISPSHGYSTLWIMEALKANKNNGKLYSFDIHDAVVSASSKSWEKYGWNFV
LGDFKEQFLSNFKKYPTPDYLFLDSLHNEEFARFYTTSLFPKILEVKRSV
YVSLHDVYNPSFWADGPRSELRKEAKLPEWLPNEEGQVVLDWMVYNQHHV
SGVYTVAEAHNKTVSDIVKKVRDNTFTSRLSTHGSANPTLFFTLKA*

mRNA from alignment at NODE_336_length_29381_cov_4.586787:10309..11199-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8108.t1 ID=Gcaud8108.t1|Name=Gcaud8108.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=891bp|location=Sequence derived from alignment at NODE_336_length_29381_cov_4.586787:10309..11199- (Gracilaria caudata M_176_S67 male)
ATGGGCAACGGTACAAAAAGGAACTTTTTGTCCGAGTGGAAGTATGTGGC
TTTTGCGATTTGTTTTCTGTTTGGCTCTTGCACTTACTTCGGAAGCACTT
GTTTAATGATATCCGGTCAAGATGTCGTGGTTAGTCAGTTACAATATGTG
TACAAGAAGTATATGCTAGAAATAGAATATTTACATGACCTTTCAAGAAA
ATACTGCAAGAGACCAGGTATGTACTGCCTCTCCGATGACTACGAACTTG
AAATATCATATATGCGGATAAGAGAAACTCGTCCGAAAGTCATCTGGGAG
ATATCTCCGTCCCATGGTTACTCAACTCTGTGGATCATGGAAGCCTTAAA
AGCAAATAAGAACAACGGTAAATTGTACTCTTTCGACATTCATGACGCAG
TAGTTTCCGCATCGTCAAAGAGCTGGGAGAAATACGGTTGGAATTTTGTC
CTCGGAGACTTTAAAGAGCAGTTCTTAAGTAACTTCAAAAAGTACCCCAC
TCCGGACTATCTCTTCCTAGATAGTCTTCACAACGAGGAATTTGCAAGAT
TCTATACAACTAGTTTGTTTCCAAAGATATTAGAGGTAAAGCGATCAGTA
TATGTCTCTCTACATGATGTGTACAATCCCTCATTTTGGGCTGATGGACC
ACGTTCGGAGCTCAGGAAAGAAGCCAAACTTCCCGAATGGCTCCCAAATG
AAGAGGGTCAGGTTGTTCTCGACTGGATGGTGTACAACCAGCATCATGTT
AGTGGGGTATATACTGTAGCTGAAGCGCATAACAAAACTGTCTCTGATAT
TGTGAAGAAGGTCAGAGACAATACTTTTACCTCACGTTTGTCAACGCATG
GATCGGCAAACCCAACCCTATTCTTTACCCTAAAGGCATAA

Coding sequence (CDS) from alignment at NODE_336_length_29381_cov_4.586787:10309..11199-

>Gcaud8108.t1 ID=Gcaud8108.t1|Name=Gcaud8108.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=891bp|location=Sequence derived from alignment at NODE_336_length_29381_cov_4.586787:10309..11199- (Gracilaria caudata M_176_S67 male)
ATGGGCAACGGTACAAAAAGGAACTTTTTGTCCGAGTGGAAGTATGTGGC
TTTTGCGATTTGTTTTCTGTTTGGCTCTTGCACTTACTTCGGAAGCACTT
GTTTAATGATATCCGGTCAAGATGTCGTGGTTAGTCAGTTACAATATGTG
TACAAGAAGTATATGCTAGAAATAGAATATTTACATGACCTTTCAAGAAA
ATACTGCAAGAGACCAGGTATGTACTGCCTCTCCGATGACTACGAACTTG
AAATATCATATATGCGGATAAGAGAAACTCGTCCGAAAGTCATCTGGGAG
ATATCTCCGTCCCATGGTTACTCAACTCTGTGGATCATGGAAGCCTTAAA
AGCAAATAAGAACAACGGTAAATTGTACTCTTTCGACATTCATGACGCAG
TAGTTTCCGCATCGTCAAAGAGCTGGGAGAAATACGGTTGGAATTTTGTC
CTCGGAGACTTTAAAGAGCAGTTCTTAAGTAACTTCAAAAAGTACCCCAC
TCCGGACTATCTCTTCCTAGATAGTCTTCACAACGAGGAATTTGCAAGAT
TCTATACAACTAGTTTGTTTCCAAAGATATTAGAGGTAAAGCGATCAGTA
TATGTCTCTCTACATGATGTGTACAATCCCTCATTTTGGGCTGATGGACC
ACGTTCGGAGCTCAGGAAAGAAGCCAAACTTCCCGAATGGCTCCCAAATG
AAGAGGGTCAGGTTGTTCTCGACTGGATGGTGTACAACCAGCATCATGTT
AGTGGGGTATATACTGTAGCTGAAGCGCATAACAAAACTGTCTCTGATAT
TGTGAAGAAGGTCAGAGACAATACTTTTACCTCACGTTTGTCAACGCATG
GATCGGCAAACCCAACCCTATTCTTTACCCTAAAGGCATAA