Gcaud2326.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2326.t1
Unique NameGcaud2326.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length285
Homology
BLAST of Gcaud2326.t1 vs. uniprot
Match: A0A2V3IPB0_9FLOR (Pre-B-cell leukemia transcription factor 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPB0_9FLOR)

HSP 1 Score: 194 bits (494), Expect = 1.430e-52
Identity = 116/253 (45.85%), Postives = 156/253 (61.66%), Query Frame = 0
Query:    1 MNGDMFLSESHREQVEAELSRLHQTQVTTRKTRAPSNRKRRRELIGKINFAKSCLSKASRGFHVDFGDVPINYENALSSRLSAKIDVKGAVTAPEIGGWVVFSDGEVVLSNAGSSSRSALRSNTAGELAGMKSMEPWVGSSQAAQVGKLGSEAQLKMAIGDRLGTSQKHDGEGDSAN---GAIAVRSFAVHIGRGMRVVQPLVLKVDVSGKVVIDGTIGEPRAVGEINFGRGSVNVLASKMWMRRGEKSFIRF 250
            ++GDMF SE HRE  E+ + RL + Q    ++RA + RK RR     +N+ K  LS A RG HVD G+V IN ENALSS+LSA++D++G  T P +GG V+ SDGE++LS  G+           G   G  S   W    +A   G +G+ A  ++   D +GT  +      +AN   G + V    V +GRGMRVVQPLVLK+DVSGKV +DG+   PRA GEI+  RGS+ +LAS+MW+R+GEKSFIRF
Sbjct: 1578 VSGDMFFSERHREMAESRVERLTRQQQMGAESRASNRRKGRRVTDAALNYEKKRLSNALRGLHVDVGEVGINLENALSSKLSARVDIRGVATRPVVGGTVILSDGEIMLSGGGA---XXXXXXXIGAEVGAVSRSAWRRQEEA---GGVGNSAGRRL---DAVGTGARGKAGAGAANCTSGGVQVERLTVALGRGMRVVQPLVLKLDVSGKVEVDGSTTAPRARGEIHLSRGSIKLLASRMWIRKGEKSFIRF 1821          
BLAST of Gcaud2326.t1 vs. uniprot
Match: R7Q8S2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8S2_CHOCR)

HSP 1 Score: 127 bits (318), Expect = 1.520e-29
Identity = 80/258 (31.01%), Postives = 141/258 (54.65%), Query Frame = 0
Query:    2 NGDMFLSESHREQVEAELSRLHQTQVTTRKTRAPSNRKRRRELIGKINFAKSCLSKASRGFHVDFGDVPINYENALSSRLSAKIDVKGAVTAPEIGGWVVFSDGEVVLSNAGSSSRSALRSNTAGELAGMKSMEPWVGSSQAAQVGKLGSEAQ-----LKMAIGDRLGTSQKHDGEGDSANGAIAVRSFAVHIGRGMRVVQPLVLKVDVSGKVVIDGTIGEPRAVGEINFGRGSVNVLASKMWMRRGEKSFIRFARGD 254
            +GD+F SE HR+++   ++  H T +   + +   N+K+RR L  + + +   L +  RG  ++FG+ P+N++N + S+LS K+ +   +  P + G + FSDG + L NA    R AL + T   +  ++ + P    S   +    G E       + +     L T  K    GD++   I +    ++IGRGM+V+QPLVL +D +G +V++G+   P+  GEI   RG VN+LA++M +R+  K+++RF + D
Sbjct:   16 SGDIFFSELHRDRLSEAIAADH-TALQLLEAKNSGNKKQRRLLQNRQSASNVALLRGRRGLSLEFGEFPVNFQNIVLSKLSGKVQMAATLANPVVSGGLTFSDGFISLGNAAGVPRGALGARTKNAM--VRKVPPTADMSLKDENHLRGREKSETDENINLEASTELTTQDKLLPNGDAS---ILLSGLRINIGRGMKVIQPLVLNLDTTGTLVLEGSPQAPQIEGEIRLLRGRVNLLATRMSIRKDAKNYVRFVKSD 267          
The following BLAST results are available for this feature:
BLAST of Gcaud2326.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IPB0_9FLOR1.430e-5245.85Pre-B-cell leukemia transcription factor 3 n=1 Tax... [more]
R7Q8S2_CHOCR1.520e-2931.01Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007452Translocation and assembly module TamBPFAMPF04357TamBcoord: 64..247
e-value: 4.1E-8
score: 32.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..285
NoneNo IPR availablePANTHERPTHR34457EMBRYO DEFECTIVE 2410coord: 62..251

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3311_length_3658_cov_4.022989contigNODE_3311_length_3658_cov_4.022989:2805..3658 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2326.t1Gcaud2326.t1Gracilaria caudata M_176_S67 malemRNANODE_3311_length_3658_cov_4.022989 2805..3658 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2326.t1 ID=Gcaud2326.t1|Name=Gcaud2326.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=285bp
MNGDMFLSESHREQVEAELSRLHQTQVTTRKTRAPSNRKRRRELIGKINF
AKSCLSKASRGFHVDFGDVPINYENALSSRLSAKIDVKGAVTAPEIGGWV
VFSDGEVVLSNAGSSSRSALRSNTAGELAGMKSMEPWVGSSQAAQVGKLG
SEAQLKMAIGDRLGTSQKHDGEGDSANGAIAVRSFAVHIGRGMRVVQPLV
LKVDVSGKVVIDGTIGEPRAVGEINFGRGSVNVLASKMWMRRGEKSFIRF
ARGDVKDDAERNSERNSERSGDTTTVQLALEDDNX
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007452TamB