Gcaud2326.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2326.t1
Unique Name	Gcaud2326.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3311_length_3658_cov_4.022989	contig	NODE_3311_length_3658_cov_4.022989:2805..3658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	242159.ABO96529
PFAMs	TamB
Max annot lvl	3041\|Chlorophyta
Evalue	6.96e-07
EggNOG OGs	2CN33@1\|root,2QTMX@2759\|Eukaryota,37JTR@33090\|Viridiplantae,34K0G@3041\|Chlorophyta
Description	TamB, inner membrane protein subunit of TAM complex
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2326	Gcaud2326	Gracilaria caudata M_176_S67 male	gene	NODE_3311_length_3658_cov_4.022989 2805..3658 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2326.t1.start1	Gcaud2326.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3311_length_3658_cov_4.022989 2805..2807 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2326.t1.CDS1	Gcaud2326.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3311_length_3658_cov_4.022989 2805..3658 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2326.t1.exon1	Gcaud2326.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3311_length_3658_cov_4.022989 2805..3658 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2326.t1	Gcaud2326.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3311_length_3658_cov_4.022989 2805..3658 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3311_length_3658_cov_4.022989:2805..3658+
coding sequence from alignment at NODE_3311_length_3658_cov_4.022989:2805..3658+

mRNA sequence

>Gcaud2326.t1 ID=Gcaud2326.t1|Name=Gcaud2326.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp
MNGDMFLSESHREQVEAELSRLHQTQVTTRKTRAPSNRKRRRELIGKINF
AKSCLSKASRGFHVDFGDVPINYENALSSRLSAKIDVKGAVTAPEIGGWV
VFSDGEVVLSNAGSSSRSALRSNTAGELAGMKSMEPWVGSSQAAQVGKLG
SEAQLKMAIGDRLGTSQKHDGEGDSANGAIAVRSFAVHIGRGMRVVQPLV
LKVDVSGKVVIDGTIGEPRAVGEINFGRGSVNVLASKMWMRRGEKSFIRF
ARGDVKDDAERNSERNSERSGDTTTVQLALEDDNX

spliced messenger RNA

>Gcaud2326.t1 ID=Gcaud2326.t1|Name=Gcaud2326.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=854bp|location=Sequence derived from alignment at NODE_3311_length_3658_cov_4.022989:2805..3658+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGTGACATGTTCTTGTCGGAAAGCCATCGGGAGCAGGTGGAGGC
AGAGTTATCGAGATTACATCAAACGCAAGTGACAACACGTAAGACGAGAG
CTCCGAGTAACAGAAAGAGAAGAAGGGAACTGATAGGGAAGATTAATTTT
GCAAAAAGTTGTCTCAGCAAAGCATCACGTGGTTTTCACGTCGACTTTGG
GGATGTACCGATTAATTACGAGAACGCGCTGTCGAGCAGACTCTCCGCCA
AAATTGACGTGAAGGGAGCTGTTACCGCACCCGAGATCGGGGGTTGGGTA
GTGTTTTCAGATGGGGAAGTGGTACTGTCCAATGCTGGCTCGTCTTCACG
GAGCGCATTGCGCTCGAACACAGCGGGCGAGCTTGCGGGCATGAAGTCGA
TGGAGCCATGGGTTGGGAGCAGCCAGGCTGCACAGGTTGGCAAACTGGGT
TCAGAGGCGCAACTGAAGATGGCGATTGGGGATAGGCTTGGAACAAGTCA
GAAGCATGACGGTGAAGGTGACAGTGCAAATGGAGCGATTGCAGTGCGGA
GTTTTGCGGTGCATATCGGACGAGGAATGAGAGTGGTGCAGCCGCTGGTT
CTGAAGGTAGACGTGTCGGGCAAGGTGGTGATTGACGGCACCATTGGTGA
GCCACGGGCCGTGGGCGAGATCAACTTTGGCAGGGGGAGTGTGAATGTGC
TGGCGTCTAAGATGTGGATGCGTCGCGGAGAGAAGAGCTTCATCCGGTTC
GCACGGGGCGATGTGAAGGATGACGCCGAGCGCAACAGCGAGCGCAATAG
CGAGCGCTCTGGTGACACGACTACAGTTCAGCTGGCACTGGAGGACGACA
ACTT

protein sequence of Gcaud2326.t1

>Gcaud2326.t1 ID=Gcaud2326.t1|Name=Gcaud2326.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=285bp
MNGDMFLSESHREQVEAELSRLHQTQVTTRKTRAPSNRKRRRELIGKINF
AKSCLSKASRGFHVDFGDVPINYENALSSRLSAKIDVKGAVTAPEIGGWV
VFSDGEVVLSNAGSSSRSALRSNTAGELAGMKSMEPWVGSSQAAQVGKLG
SEAQLKMAIGDRLGTSQKHDGEGDSANGAIAVRSFAVHIGRGMRVVQPLV
LKVDVSGKVVIDGTIGEPRAVGEINFGRGSVNVLASKMWMRRGEKSFIRF
ARGDVKDDAERNSERNSERSGDTTTVQLALEDDNX

mRNA from alignment at NODE_3311_length_3658_cov_4.022989:2805..3658+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2326.t1 ID=Gcaud2326.t1|Name=Gcaud2326.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=854bp|location=Sequence derived from alignment at NODE_3311_length_3658_cov_4.022989:2805..3658+ (Gracilaria caudata M_176_S67 male)
ATGAACGGTGACATGTTCTTGTCGGAAAGCCATCGGGAGCAGGTGGAGGC
AGAGTTATCGAGATTACATCAAACGCAAGTGACAACACGTAAGACGAGAG
CTCCGAGTAACAGAAAGAGAAGAAGGGAACTGATAGGGAAGATTAATTTT
GCAAAAAGTTGTCTCAGCAAAGCATCACGTGGTTTTCACGTCGACTTTGG
GGATGTACCGATTAATTACGAGAACGCGCTGTCGAGCAGACTCTCCGCCA
AAATTGACGTGAAGGGAGCTGTTACCGCACCCGAGATCGGGGGTTGGGTA
GTGTTTTCAGATGGGGAAGTGGTACTGTCCAATGCTGGCTCGTCTTCACG
GAGCGCATTGCGCTCGAACACAGCGGGCGAGCTTGCGGGCATGAAGTCGA
TGGAGCCATGGGTTGGGAGCAGCCAGGCTGCACAGGTTGGCAAACTGGGT
TCAGAGGCGCAACTGAAGATGGCGATTGGGGATAGGCTTGGAACAAGTCA
GAAGCATGACGGTGAAGGTGACAGTGCAAATGGAGCGATTGCAGTGCGGA
GTTTTGCGGTGCATATCGGACGAGGAATGAGAGTGGTGCAGCCGCTGGTT
CTGAAGGTAGACGTGTCGGGCAAGGTGGTGATTGACGGCACCATTGGTGA
GCCACGGGCCGTGGGCGAGATCAACTTTGGCAGGGGGAGTGTGAATGTGC
TGGCGTCTAAGATGTGGATGCGTCGCGGAGAGAAGAGCTTCATCCGGTTC
GCACGGGGCGATGTGAAGGATGACGCCGAGCGCAACAGCGAGCGCAATAG
CGAGCGCTCTGGTGACACGACTACAGTTCAGCTGGCACTGGAGGACGACA
ACTT

Coding sequence (CDS) from alignment at NODE_3311_length_3658_cov_4.022989:2805..3658+

>Gcaud2326.t1 ID=Gcaud2326.t1|Name=Gcaud2326.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=854bp|location=Sequence derived from alignment at NODE_3311_length_3658_cov_4.022989:2805..3658+ (Gracilaria caudata M_176_S67 male)
ATGAACGGTGACATGTTCTTGTCGGAAAGCCATCGGGAGCAGGTGGAGGC
AGAGTTATCGAGATTACATCAAACGCAAGTGACAACACGTAAGACGAGAG
CTCCGAGTAACAGAAAGAGAAGAAGGGAACTGATAGGGAAGATTAATTTT
GCAAAAAGTTGTCTCAGCAAAGCATCACGTGGTTTTCACGTCGACTTTGG
GGATGTACCGATTAATTACGAGAACGCGCTGTCGAGCAGACTCTCCGCCA
AAATTGACGTGAAGGGAGCTGTTACCGCACCCGAGATCGGGGGTTGGGTA
GTGTTTTCAGATGGGGAAGTGGTACTGTCCAATGCTGGCTCGTCTTCACG
GAGCGCATTGCGCTCGAACACAGCGGGCGAGCTTGCGGGCATGAAGTCGA
TGGAGCCATGGGTTGGGAGCAGCCAGGCTGCACAGGTTGGCAAACTGGGT
TCAGAGGCGCAACTGAAGATGGCGATTGGGGATAGGCTTGGAACAAGTCA
GAAGCATGACGGTGAAGGTGACAGTGCAAATGGAGCGATTGCAGTGCGGA
GTTTTGCGGTGCATATCGGACGAGGAATGAGAGTGGTGCAGCCGCTGGTT
CTGAAGGTAGACGTGTCGGGCAAGGTGGTGATTGACGGCACCATTGGTGA
GCCACGGGCCGTGGGCGAGATCAACTTTGGCAGGGGGAGTGTGAATGTGC
TGGCGTCTAAGATGTGGATGCGTCGCGGAGAGAAGAGCTTCATCCGGTTC
GCACGGGGCGATGTGAAGGATGACGCCGAGCGCAACAGCGAGCGCAATAG
CGAGCGCTCTGGTGACACGACTACAGTTCAGCTGGCACTGGAGGACGACA
ACTT