Gcaud206.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud206.t1
Unique Name	Gcaud206.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3305_length_3673_cov_4.199888	contig	NODE_3305_length_3673_cov_4.199888:727..1824 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP05250
PFAMs	2OG-FeII_Oxy_3
Max annot lvl	3041\|Chlorophyta
Evalue	1.03e-36
EggNOG OGs	KOG3710@1\|root,KOG3710@2759\|Eukaryota,37USJ@33090\|Viridiplantae,34HVK@3041\|Chlorophyta
Description	2OG-Fe(II) oxygenase superfamily
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud206	Gcaud206	Gracilaria caudata M_176_S67 male	gene	NODE_3305_length_3673_cov_4.199888 727..1824 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud206.t1.start1	Gcaud206.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3305_length_3673_cov_4.199888 727..729 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud206.t1.CDS1	Gcaud206.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3305_length_3673_cov_4.199888 727..1824 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud206.t1.exon1	Gcaud206.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3305_length_3673_cov_4.199888 727..1824 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud206.t1.stop1	Gcaud206.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3305_length_3673_cov_4.199888 1822..1824 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud206.t1	Gcaud206.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3305_length_3673_cov_4.199888 727..1824 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3305_length_3673_cov_4.199888:727..1824+
coding sequence from alignment at NODE_3305_length_3673_cov_4.199888:727..1824+

mRNA sequence

>Gcaud206.t1 ID=Gcaud206.t1|Name=Gcaud206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=366bp
MFRRTSNDARAKVSSLRRSIDAFRSLCTSHSPQDSPPQTILQALSPDTVS
HLKRHGYAVQDKLLDERSASHLRGEIDYLIANSFTRPNETHILHRHANKS
PSMQTLAKHAVIQAEVPQLPASVSVPYLRTLNDDASLAAYLNVFWPKLTI
RDQAVKVQRATGRNGCFPIHIDSSPEADDRIVTALVYPHERWCDKGGALR
IYNTPISYVDVEPVGGRVVLLSSTLMHHRVLPAERHRFAITLWLSGTLQR
VQPPCPSTSCVRTQAAFTLLQRKYRDFLFRVALQDEWERSLRESHAAEQA
HVLTQQFRNNVETIRQRLPDAVCRDLGLTDASARTQIEEVLETQQSVIQC
YQELREQMGELPFVW*

spliced messenger RNA

>Gcaud206.t1 ID=Gcaud206.t1|Name=Gcaud206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_3305_length_3673_cov_4.199888:727..1824+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGTCGAACCAGTAATGACGCGCGGGCCAAGGTTTCATCTTTGAG
GCGAAGCATCGATGCCTTCCGATCGTTGTGTACCTCACACTCACCTCAAG
ATTCGCCTCCTCAAACGATTTTGCAAGCGCTCTCTCCAGACACAGTCTCC
CATCTCAAACGTCATGGATACGCAGTGCAAGACAAGCTGCTCGACGAGCG
TTCTGCAAGTCATCTCCGCGGCGAGATTGACTATCTCATCGCCAACAGTT
TCACGCGCCCAAACGAGACGCATATCCTACACCGACATGCGAACAAATCG
CCTTCTATGCAGACGCTTGCAAAGCACGCTGTGATCCAGGCAGAAGTGCC
GCAGTTACCGGCCAGCGTTTCAGTTCCATACCTTCGTACGCTCAACGACG
ATGCGTCTCTCGCCGCGTACCTGAATGTGTTTTGGCCAAAGCTAACAATT
CGCGATCAAGCGGTGAAAGTTCAGCGTGCAACAGGGCGAAACGGATGTTT
CCCCATTCACATTGACTCATCACCAGAAGCGGATGATCGAATTGTGACGG
CATTAGTGTATCCTCATGAGCGCTGGTGTGACAAAGGCGGAGCGCTTCGA
ATCTACAACACGCCCATCTCATACGTTGACGTTGAGCCCGTTGGTGGTCG
TGTGGTGTTACTGTCATCCACATTGATGCATCACAGAGTGTTACCCGCGG
AACGTCACCGCTTCGCGATCACACTGTGGCTGTCCGGTACATTACAGCGT
GTTCAACCGCCGTGTCCCTCAACGAGCTGCGTCCGAACGCAAGCCGCGTT
TACGTTGCTGCAGCGCAAGTATCGGGACTTTTTGTTTCGTGTCGCGCTGC
AAGACGAATGGGAAAGGTCTCTACGAGAGTCACACGCGGCAGAGCAGGCG
CATGTTCTCACACAGCAGTTTCGAAACAATGTTGAAACAATTCGACAGCG
ACTACCCGATGCTGTTTGCAGAGATCTCGGGCTCACGGACGCATCGGCGC
GAACGCAAATCGAAGAGGTTTTGGAGACGCAACAAAGTGTGATACAATGT
TATCAAGAGTTGCGGGAACAGATGGGTGAGCTGCCATTCGTTTGGTGA

protein sequence of Gcaud206.t1

>Gcaud206.t1 ID=Gcaud206.t1|Name=Gcaud206.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=366bp
MFRRTSNDARAKVSSLRRSIDAFRSLCTSHSPQDSPPQTILQALSPDTVS
HLKRHGYAVQDKLLDERSASHLRGEIDYLIANSFTRPNETHILHRHANKS
PSMQTLAKHAVIQAEVPQLPASVSVPYLRTLNDDASLAAYLNVFWPKLTI
RDQAVKVQRATGRNGCFPIHIDSSPEADDRIVTALVYPHERWCDKGGALR
IYNTPISYVDVEPVGGRVVLLSSTLMHHRVLPAERHRFAITLWLSGTLQR
VQPPCPSTSCVRTQAAFTLLQRKYRDFLFRVALQDEWERSLRESHAAEQA
HVLTQQFRNNVETIRQRLPDAVCRDLGLTDASARTQIEEVLETQQSVIQC
YQELREQMGELPFVW*

mRNA from alignment at NODE_3305_length_3673_cov_4.199888:727..1824+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud206.t1 ID=Gcaud206.t1|Name=Gcaud206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_3305_length_3673_cov_4.199888:727..1824+ (Gracilaria caudata M_176_S67 male)
ATGTTCCGTCGAACCAGTAATGACGCGCGGGCCAAGGTTTCATCTTTGAG
GCGAAGCATCGATGCCTTCCGATCGTTGTGTACCTCACACTCACCTCAAG
ATTCGCCTCCTCAAACGATTTTGCAAGCGCTCTCTCCAGACACAGTCTCC
CATCTCAAACGTCATGGATACGCAGTGCAAGACAAGCTGCTCGACGAGCG
TTCTGCAAGTCATCTCCGCGGCGAGATTGACTATCTCATCGCCAACAGTT
TCACGCGCCCAAACGAGACGCATATCCTACACCGACATGCGAACAAATCG
CCTTCTATGCAGACGCTTGCAAAGCACGCTGTGATCCAGGCAGAAGTGCC
GCAGTTACCGGCCAGCGTTTCAGTTCCATACCTTCGTACGCTCAACGACG
ATGCGTCTCTCGCCGCGTACCTGAATGTGTTTTGGCCAAAGCTAACAATT
CGCGATCAAGCGGTGAAAGTTCAGCGTGCAACAGGGCGAAACGGATGTTT
CCCCATTCACATTGACTCATCACCAGAAGCGGATGATCGAATTGTGACGG
CATTAGTGTATCCTCATGAGCGCTGGTGTGACAAAGGCGGAGCGCTTCGA
ATCTACAACACGCCCATCTCATACGTTGACGTTGAGCCCGTTGGTGGTCG
TGTGGTGTTACTGTCATCCACATTGATGCATCACAGAGTGTTACCCGCGG
AACGTCACCGCTTCGCGATCACACTGTGGCTGTCCGGTACATTACAGCGT
GTTCAACCGCCGTGTCCCTCAACGAGCTGCGTCCGAACGCAAGCCGCGTT
TACGTTGCTGCAGCGCAAGTATCGGGACTTTTTGTTTCGTGTCGCGCTGC
AAGACGAATGGGAAAGGTCTCTACGAGAGTCACACGCGGCAGAGCAGGCG
CATGTTCTCACACAGCAGTTTCGAAACAATGTTGAAACAATTCGACAGCG
ACTACCCGATGCTGTTTGCAGAGATCTCGGGCTCACGGACGCATCGGCGC
GAACGCAAATCGAAGAGGTTTTGGAGACGCAACAAAGTGTGATACAATGT
TATCAAGAGTTGCGGGAACAGATGGGTGAGCTGCCATTCGTTTGGTGA

Coding sequence (CDS) from alignment at NODE_3305_length_3673_cov_4.199888:727..1824+

>Gcaud206.t1 ID=Gcaud206.t1|Name=Gcaud206.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1098bp|location=Sequence derived from alignment at NODE_3305_length_3673_cov_4.199888:727..1824+ (Gracilaria caudata M_176_S67 male)
ATGTTCCGTCGAACCAGTAATGACGCGCGGGCCAAGGTTTCATCTTTGAG
GCGAAGCATCGATGCCTTCCGATCGTTGTGTACCTCACACTCACCTCAAG
ATTCGCCTCCTCAAACGATTTTGCAAGCGCTCTCTCCAGACACAGTCTCC
CATCTCAAACGTCATGGATACGCAGTGCAAGACAAGCTGCTCGACGAGCG
TTCTGCAAGTCATCTCCGCGGCGAGATTGACTATCTCATCGCCAACAGTT
TCACGCGCCCAAACGAGACGCATATCCTACACCGACATGCGAACAAATCG
CCTTCTATGCAGACGCTTGCAAAGCACGCTGTGATCCAGGCAGAAGTGCC
GCAGTTACCGGCCAGCGTTTCAGTTCCATACCTTCGTACGCTCAACGACG
ATGCGTCTCTCGCCGCGTACCTGAATGTGTTTTGGCCAAAGCTAACAATT
CGCGATCAAGCGGTGAAAGTTCAGCGTGCAACAGGGCGAAACGGATGTTT
CCCCATTCACATTGACTCATCACCAGAAGCGGATGATCGAATTGTGACGG
CATTAGTGTATCCTCATGAGCGCTGGTGTGACAAAGGCGGAGCGCTTCGA
ATCTACAACACGCCCATCTCATACGTTGACGTTGAGCCCGTTGGTGGTCG
TGTGGTGTTACTGTCATCCACATTGATGCATCACAGAGTGTTACCCGCGG
AACGTCACCGCTTCGCGATCACACTGTGGCTGTCCGGTACATTACAGCGT
GTTCAACCGCCGTGTCCCTCAACGAGCTGCGTCCGAACGCAAGCCGCGTT
TACGTTGCTGCAGCGCAAGTATCGGGACTTTTTGTTTCGTGTCGCGCTGC
AAGACGAATGGGAAAGGTCTCTACGAGAGTCACACGCGGCAGAGCAGGCG
CATGTTCTCACACAGCAGTTTCGAAACAATGTTGAAACAATTCGACAGCG
ACTACCCGATGCTGTTTGCAGAGATCTCGGGCTCACGGACGCATCGGCGC
GAACGCAAATCGAAGAGGTTTTGGAGACGCAACAAAGTGTGATACAATGT
TATCAAGAGTTGCGGGAACAGATGGGTGAGCTGCCATTCGTTTGGTGA