Gcaud10024.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10024.t1
Unique NameGcaud10024.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_32_length_72862_cov_4.436877contigNODE_32_length_72862_cov_4.436877:26654..27187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10024Gcaud10024Gracilaria caudata M_176_S67 malegeneNODE_32_length_72862_cov_4.436877 26654..27187 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10024.t1.start1Gcaud10024.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_32_length_72862_cov_4.436877 26654..26656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10024.t1.CDS1Gcaud10024.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_32_length_72862_cov_4.436877 26654..27187 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10024.t1.exon1Gcaud10024.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_32_length_72862_cov_4.436877 26654..27187 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10024.t1.stop1Gcaud10024.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_32_length_72862_cov_4.436877 27185..27187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10024.t1Gcaud10024.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_32_length_72862_cov_4.436877 26654..27187 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10024.t1 ID=Gcaud10024.t1|Name=Gcaud10024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=178bp
MAKSKRSKVKMAYKAMRRAVMEPIHDSRLREQAAKVYEAIGLSLPEERSE
EQKMRPRSHGGFELISTFVPTPEAPKLNAVHGPLANKDDHMQLKKNVVGF
PIPGAATEARMRAETPTGRSSAMQTEDDEYEQIADRPYFYPRRERRGGGI
KKKRRERKTRNKIKSKDTTAMQVEVAT*
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spliced messenger RNA

>Gcaud10024.t1 ID=Gcaud10024.t1|Name=Gcaud10024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:26654..27187+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAGAGTAAACGAAGTAAAGTTAAAATGGCGTATAAGGCAATGCG
TCGCGCAGTGATGGAACCGATTCACGATTCCAGACTGCGCGAGCAAGCTG
CTAAAGTCTACGAGGCAATCGGATTATCTCTTCCAGAAGAAAGAAGTGAA
GAGCAGAAGATGCGCCCGAGAAGTCACGGCGGTTTCGAGTTAATATCCAC
ATTTGTTCCAACACCGGAAGCGCCGAAACTGAACGCGGTACACGGTCCAC
TCGCAAACAAGGACGATCACATGCAACTCAAGAAGAACGTCGTCGGTTTC
CCTATTCCTGGCGCTGCGACGGAAGCACGGATGAGAGCTGAGACTCCGAC
TGGCAGAAGCAGTGCTATGCAAACTGAAGACGACGAATACGAACAGATTG
CCGATAGGCCTTACTTTTATCCTCGCAGAGAGCGACGCGGCGGTGGGATC
AAAAAGAAGCGTCGTGAGAGAAAGACAAGGAATAAGATCAAGTCAAAAGA
CACGACTGCTATGCAGGTGGAGGTAGCCACATAG
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protein sequence of Gcaud10024.t1

>Gcaud10024.t1 ID=Gcaud10024.t1|Name=Gcaud10024.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MAKSKRSKVKMAYKAMRRAVMEPIHDSRLREQAAKVYEAIGLSLPEERSE
EQKMRPRSHGGFELISTFVPTPEAPKLNAVHGPLANKDDHMQLKKNVVGF
PIPGAATEARMRAETPTGRSSAMQTEDDEYEQIADRPYFYPRRERRGGGI
KKKRRERKTRNKIKSKDTTAMQVEVAT*
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mRNA from alignment at NODE_32_length_72862_cov_4.436877:26654..27187+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10024.t1 ID=Gcaud10024.t1|Name=Gcaud10024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:26654..27187+ (Gracilaria caudata M_176_S67 male)
ATGGCAAAGAGTAAACGAAGTAAAGTTAAAATGGCGTATAAGGCAATGCG
TCGCGCAGTGATGGAACCGATTCACGATTCCAGACTGCGCGAGCAAGCTG
CTAAAGTCTACGAGGCAATCGGATTATCTCTTCCAGAAGAAAGAAGTGAA
GAGCAGAAGATGCGCCCGAGAAGTCACGGCGGTTTCGAGTTAATATCCAC
ATTTGTTCCAACACCGGAAGCGCCGAAACTGAACGCGGTACACGGTCCAC
TCGCAAACAAGGACGATCACATGCAACTCAAGAAGAACGTCGTCGGTTTC
CCTATTCCTGGCGCTGCGACGGAAGCACGGATGAGAGCTGAGACTCCGAC
TGGCAGAAGCAGTGCTATGCAAACTGAAGACGACGAATACGAACAGATTG
CCGATAGGCCTTACTTTTATCCTCGCAGAGAGCGACGCGGCGGTGGGATC
AAAAAGAAGCGTCGTGAGAGAAAGACAAGGAATAAGATCAAGTCAAAAGA
CACGACTGCTATGCAGGTGGAGGTAGCCACATAG
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Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:26654..27187+

>Gcaud10024.t1 ID=Gcaud10024.t1|Name=Gcaud10024.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=534bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:26654..27187+ (Gracilaria caudata M_176_S67 male)
ATGGCAAAGAGTAAACGAAGTAAAGTTAAAATGGCGTATAAGGCAATGCG
TCGCGCAGTGATGGAACCGATTCACGATTCCAGACTGCGCGAGCAAGCTG
CTAAAGTCTACGAGGCAATCGGATTATCTCTTCCAGAAGAAAGAAGTGAA
GAGCAGAAGATGCGCCCGAGAAGTCACGGCGGTTTCGAGTTAATATCCAC
ATTTGTTCCAACACCGGAAGCGCCGAAACTGAACGCGGTACACGGTCCAC
TCGCAAACAAGGACGATCACATGCAACTCAAGAAGAACGTCGTCGGTTTC
CCTATTCCTGGCGCTGCGACGGAAGCACGGATGAGAGCTGAGACTCCGAC
TGGCAGAAGCAGTGCTATGCAAACTGAAGACGACGAATACGAACAGATTG
CCGATAGGCCTTACTTTTATCCTCGCAGAGAGCGACGCGGCGGTGGGATC
AAAAAGAAGCGTCGTGAGAGAAAGACAAGGAATAAGATCAAGTCAAAAGA
CACGACTGCTATGCAGGTGGAGGTAGCCACATAG
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