Gcaud8613.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8613.t1
Unique NameGcaud8613.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length277
Homology
BLAST of Gcaud8613.t1 vs. uniprot
Match: A0A2V3INA4_9FLOR (Signal recognition particle receptor subunit beta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INA4_9FLOR)

HSP 1 Score: 410 bits (1054), Expect = 1.450e-142
Identity = 207/275 (75.27%), Postives = 237/275 (86.18%), Query Frame = 0
Query:    1 MVLEQYAGPLRPFLFEAAGLIEEMMTMRGIDAPPIPLMIDSIIVTFVLIVLSLVFTSLRRKDTRDSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGTVPSMQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGAEGNEEAEEERAFLGFENEAFSFEHVASPVVFASGSAQELDVTAIVDFAKIHF 275
            MVLEQYAGP RP L + A  I + +   G+D PP+  ++D+I++T VL++LSL+F  LR KD RD+L++VGISGESD+ SVGKTSLFTVLRDGVFP YGTVPSMQPN+AQ++L  TNLLV +VDYPGHPRLLYKL E+LSRAKG+VFVVDGE+FTAQARRDA  LHD+LTNPVVA  ATP+LIFINKTDAQKCAKEATVKVRL+AELDRVRTASASRLRSVGAEG EE EEERAFLGFENEAF FEH ASPV  ASGSAQELDV  I++FA+ HF
Sbjct:    1 MVLEQYAGPFRPTLLQGARAISQQLKGLGVDVPPLDFIMDAIVITAVLLLLSLLFIPLRSKDKRDTLLLVGISGESDSPSVGKTSLFTVLRDGVFPKYGTVPSMQPNQAQIWLPATNLLVNLVDYPGHPRLLYKLTEHLSRAKGIVFVVDGEMFTAQARRDAALLHDVLTNPVVANKATPVLIFINKTDAQKCAKEATVKVRLQAELDRVRTASASRLRSVGAEGKEEGEEERAFLGFENEAFCFEHAASPVSIASGSAQELDVEGILEFARSHF 275          
BLAST of Gcaud8613.t1 vs. uniprot
Match: R7Q0G7_CHOCR (Signal recognition particle receptor subunit beta n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0G7_CHOCR)

HSP 1 Score: 247 bits (630), Expect = 5.510e-78
Identity = 139/289 (48.10%), Postives = 189/289 (65.40%), Query Frame = 0
Query:    1 MVLEQYAGPLRPFLFEAAGLIEEMMTMRGIDAPPIPLMIDSIIVTFVLIVLSLV----FTSLRRKDTRDSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGTVPSMQPNEAQVYLAGTNLLVPI---VDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGA----EGNEEA---EEERAFLGFENEAFSFEHVASPVVFASGSAQELDVTAIVDFAKIHF 275
            MVLEQY GP+RP +  AA  +   M   GI+ P    + D++++T +++ ++++     T L R+D R++++IVGISG+SDA +VGKT+LF  LR G  P +GTVPSM  N+A     G ++  P    +D+PGHPRL +K+  YL  AK +VFVVDG+ FTAQAR+D   L  ILT+P +A+  TP+LIF NK+D     K  TV+ RLEAEL+R R +S + LRS G      GN+ A   EEERA LG+ENE FSF+H   PV FASGSA   DV AI++FA+  F
Sbjct:    1 MVLEQYLGPIRPHVIHAAVALGNKMQAYGIEPPAHANLTDALVITVLVLTITVLGIALSTLLSRRDPRNAVLIVGISGDSDAPAVGKTALFKSLRYGTLPKHGTVPSMTVNDATFVPHGLSISAPPMRWIDFPGHPRLRHKMHAYLQMAKCIVFVVDGQRFTAQARKDTELLFTILTDPFIAEKGTPLLIFCNKSDVANPTKTVTVQTRLEAELERARASSVTTLRSAGVAVDGSGNQGALADEEERAQLGYENEPFSFDHAPGPVTFASGSAVNNDVEAIINFARSSF 289          
BLAST of Gcaud8613.t1 vs. uniprot
Match: A0A1C7N9D8_9FUNG (Signal recognition particle receptor subunit beta n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N9D8_9FUNG)

HSP 1 Score: 133 bits (335), Expect = 1.670e-34
Identity = 84/235 (35.74%), Postives = 133/235 (56.60%), Query Frame = 0
Query:   37 LMIDSIIVTFVLIVLSLV-FTSLRRKDTRDSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGTVPSMQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGAEGNEEAEEERAFLGFENEAFSFEHVASPVVFASGSAQELDVTAIVDF 270
            L+I +I+   VL  L+L+  T   +K  +++++++GIS        GKTS++ +L+ G   N+ TV SM+ NE Q+ L   N +  +VD PGH R+ ++  E+L   + +VFVVD    T + R  A +L+DIL  P V K   P+LI  NK+D         +K+  E EL+R+R    +R+        +E++E+ AFLG+E EAF FEH+ + V F S S Q+  V  + D+
Sbjct:    5 LLIKAILALVVLTALTLIALTVYTKKQNKNTILLLGIS------DAGKTSMYILLKSG--KNHPTVSSMKENEGQLTL--NNKIFDLVDIPGHDRVRFRYVEFLPVTRSIVFVVDSTTITRKIRPAAEYLYDILAQPQVQKQKIPVLIACNKSDMITALPTDKIKLLFETELNRLRGTRTARVEQ------QESDEQEAFLGYEGEAFKFEHIDNTVEFKSCSVQDQKVDLVKDW 223          
BLAST of Gcaud8613.t1 vs. uniprot
Match: A0A167K6S3_PHYB8 (Signal recognition particle receptor subunit beta n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167K6S3_PHYB8)

HSP 1 Score: 120 bits (300), Expect = 2.770e-29
Identity = 78/234 (33.33%), Postives = 127/234 (54.27%), Query Frame = 0
Query:   34 PIPLMIDSIIVTFVLIVLSLVFTSLRRKDTRDSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGTVPSMQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGAEGNEEAEEERAFLGFENEAFSFEHVASPVVFASGSAQELDVTAI 267
            PI  ++  I+     +V S  F  L++K T D+++++G+S        GKT+L+T++R G      TV SM+ NE  V L   N    +VD PGH R+ Y+  E+L  A+G+VFVVD    + Q R  A +L+++L +        P+LI  NK D      +  ++  LEAE++R+R    + +    +EG+++      FLG+E EAF FEH+ S V F   S Q+ ++ ++
Sbjct:    6 PIVYILAGIVTLLAAVVAS--FFLLKKKQTGDTILLLGVS------DAGKTALYTLIRFG--KKALTVTSMKENEGSVTLG--NKTFGLVDMPGHERIRYRYSEFLPVARGIVFVVDSTTISRQIRSVAEYLYNVLASLEAQNRKLPVLIACNKADMITALPKDKIQTLLEAEINRLRGTRTAAVEQQNSEGDDQ----EGFLGYEGEAFKFEHLESIVDFEVCSVQKEEIDSV 223          
BLAST of Gcaud8613.t1 vs. uniprot
Match: A0A507C4G8_9FUNG (Signal recognition particle receptor subunit beta n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C4G8_9FUNG)

HSP 1 Score: 117 bits (294), Expect = 3.190e-28
Identity = 86/233 (36.91%), Postives = 118/233 (50.64%), Query Frame = 0
Query:   47 VLIVLSLVFTSLRRKDT--RDSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGTVPSMQPNEAQVYLAG-----TNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFTAQARRDATFLHDILTNP-VVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGAEGNEEAEEERAFLGFENEAFSFEHVASPVVFASG--SAQELDVTAIVD 269
            VL V  +V  S  RK T  RD+ +I G+S        GKT+L+  LR G      T  SMQ NE    L        N  + IVD PGH +L Y+  E+L  A+ ++FVVD    T Q RR A +L+DIL N         PIL+  NK+D    A E  ++  LE E+D++R   A+ L    + G EE      +LGF+NEAF F+HV S + F     +  E +++ I D
Sbjct:   19 VLAVTIVVILSYFRKATSRRDTFLITGLS------DAGKTTLYLRLRYGRIKPTHT--SMQENEGLFALHTENADKANAPIHIVDVPGHEKLRYRFAEFLPIARAIIFVVDSSTITQQVRRSAEYLYDILANRHATVPKPIPILVVCNKSDHLLAASEGKIRTLLETEIDKLRATRAAALDKQDSGGQEEV-----YLGFDNEAFKFDHVPSDITFVKSCLAGTEDEISGIED 238          
BLAST of Gcaud8613.t1 vs. uniprot
Match: A0A1Y2EMM1_9FUNG (Signal recognition particle receptor subunit beta n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2EMM1_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 5.850e-25
Identity = 75/228 (32.89%), Postives = 114/228 (50.00%), Query Frame = 0
Query:   37 LMIDSIIVTFVLIVLSLVFTSLRRKDTRDSLVIVGISGESDASSVGKTSLFTVLRD--------GVFPNYGTVPSMQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGAEGNEEAEEERA--FLGFENEAFSFEHVASPVVF 254
            ++I S  V   LI + ++     +K+ +D+ +I GI         GKTSLF  LR+         +  N G  P  Q +E +++         I+D+PGH +L YK  ++    KG++FV+D   FT   R    +L++IL N  +A+N   ILI  NK D      +  +K  LE E++         LRS  A G E+ +E+    FLG+ENEAF FEH+ + V F
Sbjct:    6 IIIISAAVAVFLIAILVILKFTGKKEKKDTFIITGICDS------GKTSLFLKLRNDKIKETHTSIAENEGRFPLAQEDEDKIFH--------IIDFPGHYKLRYKYQDFTPITKGVIFVIDSATFTRNERDVTEYLYEILANKHIAENEVSILIVCNKQDYLIALPKERIKTSLENEINN--------LRSTRAAGVEQQDEDNVDDFLGYENEAFKFEHLPNQVTF 211          
BLAST of Gcaud8613.t1 vs. uniprot
Match: A0A507DBN2_9FUNG (Signal recognition particle receptor subunit beta n=3 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DBN2_9FUNG)

HSP 1 Score: 113 bits (282), Expect = 1.730e-24
Identity = 88/260 (33.85%), Postives = 135/260 (51.92%), Query Frame = 0
Query:   31 DAPPIPL---MIDSIIVTFVLIVLSLVFTSLRRKDT--RDSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGTVPSMQPNEAQVYLAG--------TNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFT--AQARRDATFLHDILTNP-VVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGAEGNEEAEEERAFLGFENEAFSFEHVASPVVF-----ASGSAQELDVTAIVD 269
            D PP+ L    +D+ +V  V  V  +VF +  R+    +D+ +I G+S        GKT+L+  LR G      T  SMQ N+ +  +          +N L+  VD PGH +L Y+  E+L  A+ +VFV+D    T  AQ RR A +L+DIL N    A    P+L+  NK+D    A E  +++ L++E+D++RT  ++ L    + G EE      FLG++NEAF FEHV + + F       GS +  DV+ + D
Sbjct: 1042 DDPPMLLGNVYLDAGLVLVVAAVTIVVFLNYFRRSISRKDTFLITGLS------DAGKTTLYLRLRYG--RTKPTHTSMQENDGRFAVFSNDANVSDRSNRLIHAVDVPGHEKLRYRFAEFLPIARAVVFVIDSSTVTQQAQVRRAAEYLYDILANKHAAAPKPVPMLVVCNKSDHLLAASEDKIRILLQSEIDKLRTTRSAALDKQDSGGQEEV-----FLGYDNEAFQFEHVPNEIRFLRCSLVCGSEERDDVSGMDD 1288          
BLAST of Gcaud8613.t1 vs. uniprot
Match: UPI000644F03C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F03C)

HSP 1 Score: 106 bits (265), Expect = 1.120e-23
Identity = 74/203 (36.45%), Postives = 109/203 (53.69%), Query Frame = 0
Query:   65 DSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGTVPSMQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGAEGNEEAEEERA-FLGFENEAFSFEHVASPVVFASGSAQELDVTA 266
            +SLV++G+         GKT+LF  L      +Y    S+  N+     AG  L  PI+D PGH ++   LP+YLS+A  +++++D   F  Q+  +A  L+DIL +P V +   PILIF NKTD      E+ V+  LE ELD +R    S   +    GNE+A  ER  +LG E  +F F+H+ + V FA GS +  +  A
Sbjct:   84 NSLVLLGLCDS------GKTTLFLKLIQKSLTSYS---SISVNKGNFNNAGKKL--PIIDIPGHAKMRPTLPQYLSQASSIIYLIDSTTFFDQSIEEAQNLYDILVDPSVYERRVPILIFCNKTDLTTIG-ESDVQSILERELDELRKTRGS---APSMAGNEDAGVEREIYLGNEGTSFQFDHLPNEVTFAQGSVKSEETEA 271          
BLAST of Gcaud8613.t1 vs. uniprot
Match: A0A1Y1VH07_9FUNG (Signal recognition particle receptor subunit beta n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VH07_9FUNG)

HSP 1 Score: 103 bits (257), Expect = 6.660e-23
Identity = 73/226 (32.30%), Postives = 111/226 (49.12%), Query Frame = 0
Query:   39 IDSIIVTFVLIVLSLVFTSLRRKDTRDSLVIVGISGESDASSVGKTSLFTVLRD--------GVFPNYGTVPSMQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGAEGNEEAEEERA--FLGFENEAFSFEHVASPVVF 254
            I SI +  +  ++ L  T  R K  +D+ +I GI         GKTSL+  LR+         +  N G  P  Q +E +V+         ++D+PGH +L YK  ++    KG++FV+D   F    R    +L++IL N  +++N   ILI  NK D      +  +K  LE E++         LRS  A G EE +E+    FLG+ENEAF FEH+ + + F
Sbjct:   13 IASIAILLIAAIVILKLTGNREK--KDTFIITGICDS------GKTSLYLRLRNDKVMETHTSITENEGRFPLAQEDEEKVFH--------VIDFPGHYKLRYKYQDFTPITKGVIFVIDSATFIKNEREVTEYLYEILANKYISENEVSILIACNKQDYLIALPKERIKTALENEINN--------LRSTRAAGVEEQDEDNVDDFLGYENEAFKFEHLPNQISF 214          
BLAST of Gcaud8613.t1 vs. uniprot
Match: A0A1X2GHC7_9FUNG (Signal recognition particle receptor subunit beta n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GHC7_9FUNG)

HSP 1 Score: 100 bits (249), Expect = 1.610e-22
Identity = 58/167 (34.73%), Postives = 91/167 (54.49%), Query Frame = 0
Query:  104 MQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVDGELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVKVRLEAELDRVRTASASRLRSVGAEGNEEAEEERAFLGFENEAFSFEHVASPVVFASGSAQELDVTAIVDF 270
            M+ NEA   L   N  + +VD PGH RL Y+  ++L+ A+ ++FVVD        R  A +L+D+L NP+V     P+LI  NK D      +  V+  LE+EL+R+R+   + +        +E++E+ A+LG+E EAF F+HV +P+     S     V  I D+
Sbjct:    1 MKENEASFVL--NNKTLEVVDIPGHERLRYRYADFLNVAQCVLFVVDSTTLHRNVRPVAEYLYDLLANPIVQAQKIPVLIVCNKQDMITALPKIKVQTLLESELNRLRSTRTASVEK------QESDEQEAYLGYEGEAFVFDHVDNPIDLVEVSISSKQVEPITDW 159          
The following BLAST results are available for this feature:
BLAST of Gcaud8613.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A2V3INA4_9FLOR1.450e-14275.27Signal recognition particle receptor subunit beta ... [more]
R7Q0G7_CHOCR5.510e-7848.10Signal recognition particle receptor subunit beta ... [more]
A0A1C7N9D8_9FUNG1.670e-3435.74Signal recognition particle receptor subunit beta ... [more]
A0A167K6S3_PHYB82.770e-2933.33Signal recognition particle receptor subunit beta ... [more]
A0A507C4G8_9FUNG3.190e-2836.91Signal recognition particle receptor subunit beta ... [more]
A0A1Y2EMM1_9FUNG5.850e-2532.89Signal recognition particle receptor subunit beta ... [more]
A0A507DBN2_9FUNG1.730e-2433.85Signal recognition particle receptor subunit beta ... [more]
UPI000644F03C1.120e-2336.45hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1Y1VH07_9FUNG6.660e-2332.30Signal recognition particle receptor subunit beta ... [more]
A0A1X2GHC7_9FUNG1.610e-2234.73Signal recognition particle receptor subunit beta ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 58..272
e-value: 8.9E-43
score: 148.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 79..198
IPR019009Signal recognition particle receptor, beta subunitPFAMPF09439SRPRBcoord: 79..250
e-value: 4.4E-27
score: 94.7
IPR019009Signal recognition particle receptor, beta subunitPANTHERPTHR11485:SF34SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT BETAcoord: 27..261
NoneNo IPR availablePANTHERPTHR11485TRANSFERRINcoord: 27..261
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..276
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..55
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..34
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_329_length_29763_cov_4.543981contigNODE_329_length_29763_cov_4.543981:5549..6379 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8613.t1Gcaud8613.t1Gracilaria caudata M_176_S67 malemRNANODE_329_length_29763_cov_4.543981 5549..6379 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8613.t1 ID=Gcaud8613.t1|Name=Gcaud8613.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=277bp
MVLEQYAGPLRPFLFEAAGLIEEMMTMRGIDAPPIPLMIDSIIVTFVLIV
LSLVFTSLRRKDTRDSLVIVGISGESDASSVGKTSLFTVLRDGVFPNYGT
VPSMQPNEAQVYLAGTNLLVPIVDYPGHPRLLYKLPEYLSRAKGLVFVVD
GELFTAQARRDATFLHDILTNPVVAKNATPILIFINKTDAQKCAKEATVK
VRLEAELDRVRTASASRLRSVGAEGNEEAEEERAFLGFENEAFSFEHVAS
PVVFASGSAQELDVTAIVDFAKIHFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR019009SRP_receptor_beta_su