Gcaud8623.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud8623.t1
Unique Name	Gcaud8623.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	315

Homology

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BLAST of Gcaud8623.t1 vs. uniprot
Match: A0A2V3IXM3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXM3_9FLOR)

HSP 1 Score: 208 bits (529), Expect = 2.970e-63
Identity = 113/206 (54.85%), Postives = 161/206 (78.16%), Query Frame = 0

Query:  110 RRRNFVRPTDPRTSIV--RCKQADGTANPSELEGEIREVYERSIRENPIVKTELQDSDRRVMDDITATGAAKMNEIVSNMKEDLKGIQEEAAERAAAMIQEESDLLLEKYEQKRLDILDRVKSDRQVIKDELTKLESLAGDMKKGGTGGKKPMTEKLLLASTTAFSVAALFYAWNGFVNSDASALSNAAIDAIVAAAAGYFASRRR 313
            R+R  + P   R  IV  +CKQ +G  + S+L+GE+R++++RSIR+ PI + EL+ SDRRVM+ IT TG ++MNEIVS+MK+ LKG++++A  RA AMIQEE+D LL KYE +R D+L++VK DR+VI++E TK+E LAG+M++   G  + +  K LL STTAF +AAL+YAWNGFVN+D +AL+NAA+DA+VAAAAGYF S+++
Sbjct:    7 RQRRKLAPRARRAKIVTLQCKQTNGE-DASQLDGELRDLFDRSIRDVPIDENELRKSDRRVMEGITETGVSRMNEIVSDMKDSLKGVEDDAINRATAMIQEETDALLSKYEDQRSDLLNKVKMDRKVIQEEFTKIEQLAGNMEERREGDGQSLKTKALLVSTTAFVLAALYYAWNGFVNTDPAALTNAAVDAVVAAAAGYFLSKQQ 211

The following BLAST results are available for this feature:

BLAST of Gcaud8623.t1 vs. uniprot

BLAST of Gcaud8623.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IXM3_9FLOR	2.970e-63	54.85	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 177..197
None	No IPR available	COILS	Coil	Coil	coord: 225..245
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 310..314
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 264..285
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 291..309
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 286..290
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..263
None	No IPR available	TMHMM	TMhelix		coord: 291..310
None	No IPR available	TMHMM	TMhelix		coord: 264..281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_329_length_29763_cov_4.543981	contig	NODE_329_length_29763_cov_4.543981:25360..26454 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8623.t1	Gcaud8623.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_329_length_29763_cov_4.543981 25360..26454 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud8623.t1 ID=Gcaud8623.t1|Name=Gcaud8623.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=315bp
MPHEMQRGCLTGEIKRVIASLFPRSDCNYLRSYPEQSPQTNVVITEVYAF
YIMSFSNATTQTGSERGHLDSQLKQGSLRFRACFLLHPIPGRTRSSLSNT
SLQSIDTCPRRRNFVRPTDPRTSIVRCKQADGTANPSELEGEIREVYERS
IRENPIVKTELQDSDRRVMDDITATGAAKMNEIVSNMKEDLKGIQEEAAE
RAAAMIQEESDLLLEKYEQKRLDILDRVKSDRQVIKDELTKLESLAGDMK
KGGTGGKKPMTEKLLLASTTAFSVAALFYAWNGFVNSDASALSNAAIDAI
VAAAAGYFASRRRT*