Gcaud2081.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2081.t1
Unique Name	Gcaud2081.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	190

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3297_length_3690_cov_4.524312	contig	NODE_3297_length_3690_cov_4.524312:2798..3367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMK041CT
PFAMs	PK,PK_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00015
KEGG ko	ko:K00873
KEGG Reaction	R00200,R00430,R01138,R01858,R02320
KEGG Pathway	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230
KEGG Module	M00001,M00002,M00049,M00050
GOs	GO:0000003,GO:0000287,GO:0003006,GO:0003674,GO:0003824,GO:0004743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006629,GO:0006631,GO:0006633,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009791,GO:0009987,GO:0010035,GO:0010038,GO:0010154,GO:0010431,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0021700,GO:0022414,GO:0030955,GO:0031420,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046686,GO:0046700,GO:0046872,GO:0046939,GO:0048316,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0061458,GO:0071695,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue	1.56e-68
EggNOG OGs	COG0469@1\|root,KOG2323@2759\|Eukaryota
EC	2.7.1.40
Description	pyruvate kinase activity
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2081	Gcaud2081	Gracilaria caudata M_176_S67 male	gene	NODE_3297_length_3690_cov_4.524312 2798..3367 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2081.t1.start1	Gcaud2081.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3297_length_3690_cov_4.524312 2798..2800 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2081.t1.CDS1	Gcaud2081.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3297_length_3690_cov_4.524312 2798..3367 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2081.t1.exon1	Gcaud2081.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3297_length_3690_cov_4.524312 2798..3367 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2081.t1.stop1	Gcaud2081.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3297_length_3690_cov_4.524312 3365..3367 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2081.t1	Gcaud2081.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3297_length_3690_cov_4.524312 2798..3367 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3297_length_3690_cov_4.524312:2798..3367+
coding sequence from alignment at NODE_3297_length_3690_cov_4.524312:2798..3367+

mRNA sequence

>Gcaud2081.t1 ID=Gcaud2081.t1|Name=Gcaud2081.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=190bp
MSKIVCNIGPKTCDFRSIEKLAEIGMDFVRLNMSHDTHEWHKAEWHKAVI
DNIRQINAAARFNLGILLDTKGPEVRSGDVKALIKVTRGQRFVWTIRKDS
DSFDESIVDVNHDDFINDVYVGDTLLVDGGMCSFLCTEKTETDVISECID
GGSTLNSRRDLNVRGKSASLPAVKEKDWQDIKFEMEMKR*

spliced messenger RNA

>Gcaud2081.t1 ID=Gcaud2081.t1|Name=Gcaud2081.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=570bp|location=Sequence derived from alignment at NODE_3297_length_3690_cov_4.524312:2798..3367+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAAATTGTATGCAATATTGGTCCGAAAACCTGTGACTTTCGGAG
TATAGAGAAGCTCGCAGAGATTGGAATGGATTTTGTCCGACTCAACATGA
GCCACGATACTCATGAATGGCATAAGGCTGAATGGCACAAGGCTGTTATC
GATAATATTCGACAGATAAATGCTGCAGCACGCTTCAACCTTGGTATTTT
GTTAGACACAAAAGGCCCTGAAGTTCGGAGTGGTGATGTCAAGGCACTTA
TCAAAGTGACGAGAGGTCAACGGTTTGTTTGGACTATCAGAAAGGATTCT
GATAGCTTTGACGAAAGTATAGTTGATGTCAATCACGATGACTTTATCAA
CGATGTCTATGTTGGAGATACCTTGCTCGTTGATGGCGGAATGTGTTCAT
TTTTGTGCACTGAAAAGACAGAGACAGACGTCATCTCGGAGTGCATCGAT
GGTGGCAGCACTCTGAACTCACGTCGCGATCTCAATGTCAGGGGCAAGAG
CGCTTCCTTGCCGGCTGTCAAAGAAAAGGATTGGCAGGACATTAAATTCG
AAATGGAAATGAAACGTTGA

protein sequence of Gcaud2081.t1

>Gcaud2081.t1 ID=Gcaud2081.t1|Name=Gcaud2081.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=190bp
MSKIVCNIGPKTCDFRSIEKLAEIGMDFVRLNMSHDTHEWHKAEWHKAVI
DNIRQINAAARFNLGILLDTKGPEVRSGDVKALIKVTRGQRFVWTIRKDS
DSFDESIVDVNHDDFINDVYVGDTLLVDGGMCSFLCTEKTETDVISECID
GGSTLNSRRDLNVRGKSASLPAVKEKDWQDIKFEMEMKR*

mRNA from alignment at NODE_3297_length_3690_cov_4.524312:2798..3367+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2081.t1 ID=Gcaud2081.t1|Name=Gcaud2081.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=570bp|location=Sequence derived from alignment at NODE_3297_length_3690_cov_4.524312:2798..3367+ (Gracilaria caudata M_176_S67 male)
ATGAGCAAAATTGTATGCAATATTGGTCCGAAAACCTGTGACTTTCGGAG
TATAGAGAAGCTCGCAGAGATTGGAATGGATTTTGTCCGACTCAACATGA
GCCACGATACTCATGAATGGCATAAGGCTGAATGGCACAAGGCTGTTATC
GATAATATTCGACAGATAAATGCTGCAGCACGCTTCAACCTTGGTATTTT
GTTAGACACAAAAGGCCCTGAAGTTCGGAGTGGTGATGTCAAGGCACTTA
TCAAAGTGACGAGAGGTCAACGGTTTGTTTGGACTATCAGAAAGGATTCT
GATAGCTTTGACGAAAGTATAGTTGATGTCAATCACGATGACTTTATCAA
CGATGTCTATGTTGGAGATACCTTGCTCGTTGATGGCGGAATGTGTTCAT
TTTTGTGCACTGAAAAGACAGAGACAGACGTCATCTCGGAGTGCATCGAT
GGTGGCAGCACTCTGAACTCACGTCGCGATCTCAATGTCAGGGGCAAGAG
CGCTTCCTTGCCGGCTGTCAAAGAAAAGGATTGGCAGGACATTAAATTCG
AAATGGAAATGAAACGTTGA

Coding sequence (CDS) from alignment at NODE_3297_length_3690_cov_4.524312:2798..3367+

>Gcaud2081.t1 ID=Gcaud2081.t1|Name=Gcaud2081.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=570bp|location=Sequence derived from alignment at NODE_3297_length_3690_cov_4.524312:2798..3367+ (Gracilaria caudata M_176_S67 male)
ATGAGCAAAATTGTATGCAATATTGGTCCGAAAACCTGTGACTTTCGGAG
TATAGAGAAGCTCGCAGAGATTGGAATGGATTTTGTCCGACTCAACATGA
GCCACGATACTCATGAATGGCATAAGGCTGAATGGCACAAGGCTGTTATC
GATAATATTCGACAGATAAATGCTGCAGCACGCTTCAACCTTGGTATTTT
GTTAGACACAAAAGGCCCTGAAGTTCGGAGTGGTGATGTCAAGGCACTTA
TCAAAGTGACGAGAGGTCAACGGTTTGTTTGGACTATCAGAAAGGATTCT
GATAGCTTTGACGAAAGTATAGTTGATGTCAATCACGATGACTTTATCAA
CGATGTCTATGTTGGAGATACCTTGCTCGTTGATGGCGGAATGTGTTCAT
TTTTGTGCACTGAAAAGACAGAGACAGACGTCATCTCGGAGTGCATCGAT
GGTGGCAGCACTCTGAACTCACGTCGCGATCTCAATGTCAGGGGCAAGAG
CGCTTCCTTGCCGGCTGTCAAAGAAAAGGATTGGCAGGACATTAAATTCG
AAATGGAAATGAAACGTTGA