Gcaud3037.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3037.t1
Unique NameGcaud3037.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_328_length_29789_cov_4.262846contigNODE_328_length_29789_cov_4.262846:16033..17542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3037Gcaud3037Gracilaria caudata M_176_S67 malegeneNODE_328_length_29789_cov_4.262846 16033..17542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3037.t1Gcaud3037.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_328_length_29789_cov_4.262846 16033..17542 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3037.t1.stop1Gcaud3037.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_328_length_29789_cov_4.262846 16033..16035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3037.t1.CDS1Gcaud3037.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_328_length_29789_cov_4.262846 16033..16263 -
Gcaud3037.t1.CDS2Gcaud3037.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_328_length_29789_cov_4.262846 16412..16437 -
Gcaud3037.t1.CDS3Gcaud3037.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_328_length_29789_cov_4.262846 17464..17542 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3037.t1.exon1Gcaud3037.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_328_length_29789_cov_4.262846 16033..16263 -
Gcaud3037.t1.exon2Gcaud3037.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_328_length_29789_cov_4.262846 16412..16437 -
Gcaud3037.t1.exon3Gcaud3037.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_328_length_29789_cov_4.262846 17464..17542 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3037.t1.intron1Gcaud3037.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_328_length_29789_cov_4.262846 16264..16411 -
Gcaud3037.t1.intron2Gcaud3037.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_328_length_29789_cov_4.262846 16438..17463 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3037.t1.start1Gcaud3037.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_328_length_29789_cov_4.262846 17540..17542 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3037.t1 ID=Gcaud3037.t1|Name=Gcaud3037.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=112bp
MHICWEATSAVSYASDLNRVRASRSAGYRILKPFKDVLLCNQLLFFRNRK
LEGLKNFPIIFSDRYVMIQVPYHQFGHKGRRHFRENLGVGRIIDPQWCTR
QEVTAFRAVCK*
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spliced messenger RNA

>Gcaud3037.t1 ID=Gcaud3037.t1|Name=Gcaud3037.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:16033..17542- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACATTTGCTGGGAGGCTACTTCGGCAGTTTCGTATGCTTCAGACCT
CAATCGTGTCCGAGCGAGTCGGAGTGCGGGCTATAGAATATTGAAACCTT
TTAAAGATGTCTTACTCTGTAACCAACTTCTCTTTTTCCGGAATCGAAAG
CTCGAAGGTTTGAAGAACTTCCCCATAATCTTCAGTGATCGTTATGTGAT
GATTCAAGTTCCTTATCACCAGTTTGGCCACAAAGGCAGGCGCCATTTCA
GAGAGAACCTTGGTGTAGGACGCATCATTGACCCACAGTGGTGTACACGT
CAAGAAGTAACGGCCTTTCGAGCCGTTTGCAAATAG
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protein sequence of Gcaud3037.t1

>Gcaud3037.t1 ID=Gcaud3037.t1|Name=Gcaud3037.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=112bp
MHICWEATSAVSYASDLNRVRASRSAGYRILKPFKDVLLCNQLLFFRNRK
LEGLKNFPIIFSDRYVMIQVPYHQFGHKGRRHFRENLGVGRIIDPQWCTR
QEVTAFRAVCK*
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mRNA from alignment at NODE_328_length_29789_cov_4.262846:16033..17542-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3037.t1 ID=Gcaud3037.t1|Name=Gcaud3037.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1510bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:16033..17542- (Gracilaria caudata M_176_S67 male)
ATGCACATTTGCTGGGAGGCTACTTCGGCAGTTTCGTATGCTTCAGACCT
CAATCGTGTCCGAGCGAGTCGGAGTGCGGGTAAGTTGGGGAAGGAGGCGC
ACAAAGCGCTTTTACCCGCACAAGCGCGTGACATTGCACTGTGAGACGTT
GAACTAAGGCTGTGTGATACATCGTCATGCTAAAATACTACGGAAGATTT
GTTTTTCTGTGTCTGCTGAACTGAGGATATGGTGACACTCGACAGAAAAA
TTGGTCCCTCGTCTTCGACTGGGGCCCGAAATTTTCCGTGGTGTTCCTTC
TCTCTCTATTACAGGTGCAATAGTTCAATTACTACTTACTGCAGAGTCCG
TGGTATTGATACTCTTCGTTTAACCGCTGCGTAATCAATGGGAACGGAAA
CCTGGTCGTGAAAAATCGGTAATCCTTTGTTGAGCAACCCAGATTCCTGT
GGAAATGGAACTCTTGGTAACTGTAGCAACCCTCTCTCCGCTACGCAGGC
TTCTGCTGCCTTCTTAGATGTAGATCTTGACTTCCATATTCGTGTCGGAA
CTTCCGCTTTAGCGCTAATGCAATGGGCGACACTGTCTGTGCAGAACACC
TCATCGCCTTTTCATAGAGCGCCGTTGCCTGAGATATCGCGACGGCGTTT
AAGCGACTTTGACCAAGTACCGTGCGTTTCGACATCAAGTCTTCGTCCAA
CTTATCTTTAGTTCCCATCTTTGAAGCAATAATTTAGAGCTTCCAAAGCT
GAACAAACGCACCCCCCCACCACCTCTCCAGTCTCCGACTCCTCCGACAA
ATACGCTTCATTCAATCTTTGGACCAGCAATGTCAACTCCTGGAGTTTAT
ACCCAGCTGACTGATACCTTTCAAGATTCTTCATGGTGTCCAACTGTCTC
CATTGCTCGAAGAGCTATTCTTGGGTCCGTCATGGTCAGAAATGAACGCG
TGCGACACGTAGCCTTCGCACCAATCAAAGAACATTTAGTTCTCTGAGTC
CTCCGGCTCGCAAATATTTGTGGATAACAGATCATTGTGTGCCACTGTTA
GGGGTATGATGGAATCCTGAAGTACTCGCAATTCCTTCTTGATGCGATCA
CCAAGGCTATAGAATATTGAAACCTTTTAAAGTACGTTGCACTCTGTATC
GACGGAATAATGAATGACTTTTGGGTTGCGACATATGCGATCTTTATGTT
CATTTAAACGTTCCGGGCGCAGATCCAAGAATCCAGCCTTTACAAGCGCT
TTTTCCTTACCAATCGTGATCTGTTGAAGGATGTCTTACTCTGTAACCAA
CTTCTCTTTTTCCGGAATCGAAAGCTCGAAGGTTTGAAGAACTTCCCCAT
AATCTTCAGTGATCGTTATGTGATGATTCAAGTTCCTTATCACCAGTTTG
GCCACAAAGGCAGGCGCCATTTCAGAGAGAACCTTGGTGTAGGACGCATC
ATTGACCCACAGTGGTGTACACGTCAAGAAGTAACGGCCTTTCGAGCCGT
TTGCAAATAG
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Coding sequence (CDS) from alignment at NODE_328_length_29789_cov_4.262846:16033..17542-

>Gcaud3037.t1 ID=Gcaud3037.t1|Name=Gcaud3037.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=336bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:16033..17542- (Gracilaria caudata M_176_S67 male)
ATGCACATTTGCTGGGAGGCTACTTCGGCAGTTTCGTATGCTTCAGACCT
CAATCGTGTCCGAGCGAGTCGGAGTGCGGGCTATAGAATATTGAAACCTT
TTAAAGATGTCTTACTCTGTAACCAACTTCTCTTTTTCCGGAATCGAAAG
CTCGAAGGTTTGAAGAACTTCCCCATAATCTTCAGTGATCGTTATGTGAT
GATTCAAGTTCCTTATCACCAGTTTGGCCACAAAGGCAGGCGCCATTTCA
GAGAGAACCTTGGTGTAGGACGCATCATTGACCCACAGTGGTGTACACGT
CAAGAAGTAACGGCCTTTCGAGCCGTTTGCAAATAG
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