Gcaud3040.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3040.t1
Unique Name	Gcaud3040.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	323

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_328_length_29789_cov_4.262846	contig	NODE_328_length_29789_cov_4.262846:23807..24858 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	37682.EMT31096
PFAMs	Glyco_hydro_19,peroxidase
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00092
KEGG ko	ko:K00434
KEGG Reaction	R00644
KEGG Pathway	ko00053,ko00480,map00053,map00480
Evalue	5.75e-38
EggNOG OGs	COG3979@1\|root,KOG4742@2759\|Eukaryota,389JF@33090\|Viridiplantae,3GYQP@35493\|Streptophyta,3M3RM@4447\|Liliopsida,3IV08@38820\|Poales
EC	1.11.1.11
Description	Chitinase class I
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3040	Gcaud3040	Gracilaria caudata M_176_S67 male	gene	NODE_328_length_29789_cov_4.262846 23807..24858 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3040.t1	Gcaud3040.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_328_length_29789_cov_4.262846 23807..24858 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3040.t1.start1	Gcaud3040.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_328_length_29789_cov_4.262846 23807..23809 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3040.t1.CDS1	Gcaud3040.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_328_length_29789_cov_4.262846 23807..24540 +
Gcaud3040.t1.CDS2	Gcaud3040.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_328_length_29789_cov_4.262846 24624..24858 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3040.t1.exon1	Gcaud3040.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_328_length_29789_cov_4.262846 23807..24540 +
Gcaud3040.t1.exon2	Gcaud3040.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_328_length_29789_cov_4.262846 24624..24858 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3040.t1.intron1	Gcaud3040.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_328_length_29789_cov_4.262846 24541..24623 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3040.t1.stop1	Gcaud3040.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_328_length_29789_cov_4.262846 24856..24858 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_328_length_29789_cov_4.262846:23807..24858+
coding sequence from alignment at NODE_328_length_29789_cov_4.262846:23807..24858+

mRNA sequence

>Gcaud3040.t1 ID=Gcaud3040.t1|Name=Gcaud3040.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=323bp
MFAFIPSLPACKPKPLFKIPSNPLDPSSNCLRMSAAPLSRRSFTLAALST
ISISFLPKSNQAATTLPTISSPPATREAQAQALRKAVRAAIKADSTMAAT
LLRLAFHDSFTFDLVSGKGGANGSIRFETGRGENFGLERAVNMLRPMQAS
IGLGWGDVVAVAGAEAVEATGGPHIEVRLGRDQAETEDPRGALPAPSETV
DELRARFEPRGFDDVDLVALSGAHTLGRVGGGGPFVAEPNRFKNDYFKNL
LWYQDRRERNLSTTTGPPDRPNFQLPSDMHLLDDPKTLAIVRKFGADEAA
FFAQFVDSYNKMVSVGTPFASR*

spliced messenger RNA

>Gcaud3040.t1 ID=Gcaud3040.t1|Name=Gcaud3040.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:23807..24858+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCTTCATTCCGTCTTTACCCGCCTGCAAACCCAAACCATTGTT
CAAAATCCCTAGCAATCCTCTTGACCCTTCTTCAAATTGTCTTAGGATGT
CCGCAGCCCCACTTTCCCGCCGCTCCTTCACGCTGGCTGCGTTGTCCACC
ATATCCATCTCATTCCTTCCAAAATCAAACCAAGCCGCAACCACTCTTCC
CACGATTTCGTCACCCCCCGCAACCCGCGAGGCCCAAGCACAAGCTCTCC
GCAAAGCTGTGCGCGCAGCAATCAAAGCCGATTCCACCATGGCAGCCACA
TTACTCCGCCTTGCCTTTCACGATTCCTTCACTTTTGACCTAGTCTCTGG
CAAAGGCGGTGCTAACGGTTCAATTCGTTTCGAGACCGGTCGCGGTGAGA
ATTTCGGACTTGAACGCGCCGTTAATATGCTCCGTCCTATGCAGGCATCC
ATCGGTTTGGGATGGGGAGACGTCGTCGCTGTGGCAGGTGCAGAAGCTGT
GGAAGCCACCGGTGGTCCACATATAGAGGTTCGTCTCGGAAGAGACCAGG
CCGAAACTGAGGATCCTCGCGGCGCACTTCCTGCGCCCTCGGAGACTGTG
GATGAACTTCGTGCCAGATTCGAACCGAGAGGATTCGATGATGTGGATCT
TGTGGCGCTATCAGGTGCACACACGTTGGGCAGGGTGGGTGGCGGAGGAC
CGTTTGTAGCAGAACCAAATCGATTCAAGAATGACTACTTCAAAAACTTG
CTGTGGTACCAGGACAGACGTGAACGAAATCTGTCCACCACCACAGGGCC
ACCAGACCGGCCCAACTTCCAGCTCCCTAGTGATATGCACTTGCTGGACG
ATCCTAAAACGCTTGCTATTGTGCGCAAGTTCGGAGCTGATGAGGCGGCT
TTCTTCGCGCAATTTGTGGACTCTTACAACAAGATGGTCAGTGTGGGTAC
GCCGTTTGCATCCCGCTGA

protein sequence of Gcaud3040.t1

>Gcaud3040.t1 ID=Gcaud3040.t1|Name=Gcaud3040.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=323bp
MFAFIPSLPACKPKPLFKIPSNPLDPSSNCLRMSAAPLSRRSFTLAALST
ISISFLPKSNQAATTLPTISSPPATREAQAQALRKAVRAAIKADSTMAAT
LLRLAFHDSFTFDLVSGKGGANGSIRFETGRGENFGLERAVNMLRPMQAS
IGLGWGDVVAVAGAEAVEATGGPHIEVRLGRDQAETEDPRGALPAPSETV
DELRARFEPRGFDDVDLVALSGAHTLGRVGGGGPFVAEPNRFKNDYFKNL
LWYQDRRERNLSTTTGPPDRPNFQLPSDMHLLDDPKTLAIVRKFGADEAA
FFAQFVDSYNKMVSVGTPFASR*

mRNA from alignment at NODE_328_length_29789_cov_4.262846:23807..24858+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3040.t1 ID=Gcaud3040.t1|Name=Gcaud3040.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1052bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:23807..24858+ (Gracilaria caudata M_176_S67 male)
ATGTTCGCCTTCATTCCGTCTTTACCCGCCTGCAAACCCAAACCATTGTT
CAAAATCCCTAGCAATCCTCTTGACCCTTCTTCAAATTGTCTTAGGATGT
CCGCAGCCCCACTTTCCCGCCGCTCCTTCACGCTGGCTGCGTTGTCCACC
ATATCCATCTCATTCCTTCCAAAATCAAACCAAGCCGCAACCACTCTTCC
CACGATTTCGTCACCCCCCGCAACCCGCGAGGCCCAAGCACAAGCTCTCC
GCAAAGCTGTGCGCGCAGCAATCAAAGCCGATTCCACCATGGCAGCCACA
TTACTCCGCCTTGCCTTTCACGATTCCTTCACTTTTGACCTAGTCTCTGG
CAAAGGCGGTGCTAACGGTTCAATTCGTTTCGAGACCGGTCGCGGTGAGA
ATTTCGGACTTGAACGCGCCGTTAATATGCTCCGTCCTATGCAGGCATCC
ATCGGTTTGGGATGGGGAGACGTCGTCGCTGTGGCAGGTGCAGAAGCTGT
GGAAGCCACCGGTGGTCCACATATAGAGGTTCGTCTCGGAAGAGACCAGG
CCGAAACTGAGGATCCTCGCGGCGCACTTCCTGCGCCCTCGGAGACTGTG
GATGAACTTCGTGCCAGATTCGAACCGAGAGGATTCGATGATGTGGATCT
TGTGGCGCTATCAGGTGCACACACGTTGGGCAGGGTGGGTGGCGGAGGAC
CGTTTGTAGCAGAACCAAATCGATTCAAGAATGAGTACGTGTTTATCGCG
CCTCGCCAACGTGTTCCTTCTGTTCTAACTTACTGACGACGACGAATTTG
TATGTATTATCGCACAGCTACTTCAAAAACTTGCTGTGGTACCAGGACAG
ACGTGAACGAAATCTGTCCACCACCACAGGGCCACCAGACCGGCCCAACT
TCCAGCTCCCTAGTGATATGCACTTGCTGGACGATCCTAAAACGCTTGCT
ATTGTGCGCAAGTTCGGAGCTGATGAGGCGGCTTTCTTCGCGCAATTTGT
GGACTCTTACAACAAGATGGTCAGTGTGGGTACGCCGTTTGCATCCCGCT
GA

Coding sequence (CDS) from alignment at NODE_328_length_29789_cov_4.262846:23807..24858+

>Gcaud3040.t1 ID=Gcaud3040.t1|Name=Gcaud3040.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=969bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:23807..24858+ (Gracilaria caudata M_176_S67 male)
ATGTTCGCCTTCATTCCGTCTTTACCCGCCTGCAAACCCAAACCATTGTT
CAAAATCCCTAGCAATCCTCTTGACCCTTCTTCAAATTGTCTTAGGATGT
CCGCAGCCCCACTTTCCCGCCGCTCCTTCACGCTGGCTGCGTTGTCCACC
ATATCCATCTCATTCCTTCCAAAATCAAACCAAGCCGCAACCACTCTTCC
CACGATTTCGTCACCCCCCGCAACCCGCGAGGCCCAAGCACAAGCTCTCC
GCAAAGCTGTGCGCGCAGCAATCAAAGCCGATTCCACCATGGCAGCCACA
TTACTCCGCCTTGCCTTTCACGATTCCTTCACTTTTGACCTAGTCTCTGG
CAAAGGCGGTGCTAACGGTTCAATTCGTTTCGAGACCGGTCGCGGTGAGA
ATTTCGGACTTGAACGCGCCGTTAATATGCTCCGTCCTATGCAGGCATCC
ATCGGTTTGGGATGGGGAGACGTCGTCGCTGTGGCAGGTGCAGAAGCTGT
GGAAGCCACCGGTGGTCCACATATAGAGGTTCGTCTCGGAAGAGACCAGG
CCGAAACTGAGGATCCTCGCGGCGCACTTCCTGCGCCCTCGGAGACTGTG
GATGAACTTCGTGCCAGATTCGAACCGAGAGGATTCGATGATGTGGATCT
TGTGGCGCTATCAGGTGCACACACGTTGGGCAGGGTGGGTGGCGGAGGAC
CGTTTGTAGCAGAACCAAATCGATTCAAGAATGACTACTTCAAAAACTTG
CTGTGGTACCAGGACAGACGTGAACGAAATCTGTCCACCACCACAGGGCC
ACCAGACCGGCCCAACTTCCAGCTCCCTAGTGATATGCACTTGCTGGACG
ATCCTAAAACGCTTGCTATTGTGCGCAAGTTCGGAGCTGATGAGGCGGCT
TTCTTCGCGCAATTTGTGGACTCTTACAACAAGATGGTCAGTGTGGGTAC
GCCGTTTGCATCCCGCTGA