Gcaud3035.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3035.t1
Unique Name	Gcaud3035.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	634

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_328_length_29789_cov_4.262846	contig	NODE_328_length_29789_cov_4.262846:10021..11922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	329726.AM1_0817
PFAMs	Lipoxygenase
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00561
KEGG ko	ko:K19246
KEGG Reaction	R01593
KEGG Pathway	ko00590,ko01100,map00590,map01100
Evalue	2.37e-94
EggNOG OGs	COG0753@1\|root,COG0753@2\|Bacteria,1GQ8A@1117\|Cyanobacteria
EC	1.13.11.33
Description	Lipoxygenase
COG category	P
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3035	Gcaud3035	Gracilaria caudata M_176_S67 male	gene	NODE_328_length_29789_cov_4.262846 10021..11922 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3035.t1.start1	Gcaud3035.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_328_length_29789_cov_4.262846 10021..10023 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3035.t1.CDS1	Gcaud3035.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_328_length_29789_cov_4.262846 10021..11922 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3035.t1.exon1	Gcaud3035.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_328_length_29789_cov_4.262846 10021..11922 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3035.t1.stop1	Gcaud3035.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_328_length_29789_cov_4.262846 11920..11922 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3035.t1	Gcaud3035.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_328_length_29789_cov_4.262846 10021..11922 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_328_length_29789_cov_4.262846:10021..11922+
coding sequence from alignment at NODE_328_length_29789_cov_4.262846:10021..11922+

mRNA sequence

>Gcaud3035.t1 ID=Gcaud3035.t1|Name=Gcaud3035.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=634bp
MLFGIGLFSDTEVIAIPQHDRENAVKRAKEIEESKKEYQWARDIIGETPM
VDGVPREEHPPIGWVSGIANTIFRVLSNNLAVKYANSKENLREETQKLLF
RLGGITGSVLQKITLGRFDSEEAKKLLDDIGELFDAATETGGKGTCFEEY
KDLFKVFKPDDVAKQDQFLRDDIFGWYRVAGPDPLHIQKLTGDVKDMFPE
LTEDIFQGVKGFSDDSLEEASRENRLFYIDFKEFENLPVGKLPDGSVKEG
FHIYAPTGLLAVPKVLDDRTTVLPIAIRCGQGNMYPMYTANPEHTDPVTW
LAAKCTVQVADGVMLEARYHLGRTHLLLETFICSMRRTLAPTHPILKLLA
VHFEGTHFINYLGSLRLAAPGGTIDVITAPQIETTAALCLEAIRPPFKFN
DWMPDKEFEARGVLDADCLKYPYRDDALKIWEAIKDWVHAYVTAYYKSDD
DVVGDNELANWSREIVDPKLGSLPGFGETADGQIKTIEYLVRLVSTLIYI
GSVQHAALNFAQGAFMQFVPAMPLAGFAPAPTTPKPFSSVDHWVEEMLPD
MQVARRQLNTAELLAGFQWTSLGEYGRYLSFAPDEVQDALKIFRERLSEI
GGEIQKRNAVERLVGLPVYDFLVPKNIPQSTNV*

spliced messenger RNA

>Gcaud3035.t1 ID=Gcaud3035.t1|Name=Gcaud3035.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1902bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:10021..11922+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTATTTGGCATAGGTCTCTTCTCTGACACAGAGGTCATTGCGATTCC
TCAGCACGACAGGGAAAATGCTGTAAAGCGTGCAAAAGAAATTGAAGAGA
GCAAGAAGGAGTATCAATGGGCTCGTGATATCATCGGGGAAACGCCAATG
GTCGACGGTGTTCCTAGAGAAGAGCATCCGCCCATTGGGTGGGTAAGTGG
AATAGCCAACACCATTTTCAGGGTCCTGTCCAACAATCTCGCTGTCAAAT
ATGCAAACTCCAAAGAGAATCTCCGCGAAGAAACTCAGAAACTACTATTT
AGACTCGGAGGCATCACTGGATCTGTGCTTCAGAAAATTACCTTGGGAAG
ATTTGATTCTGAAGAAGCTAAAAAACTCCTCGATGACATCGGCGAACTTT
TTGATGCTGCTACTGAGACTGGCGGAAAAGGAACTTGTTTCGAAGAATAC
AAAGATCTGTTCAAAGTGTTCAAACCCGATGACGTTGCAAAGCAAGACCA
GTTTCTGCGAGACGACATATTTGGGTGGTATCGAGTGGCTGGTCCAGACC
CGTTGCATATTCAGAAACTCACAGGGGACGTGAAAGATATGTTTCCTGAA
TTGACTGAAGATATCTTTCAAGGTGTGAAAGGTTTCAGTGACGACAGCTT
AGAAGAGGCATCGCGTGAAAACCGCCTCTTCTACATTGACTTCAAAGAAT
TTGAAAATCTCCCGGTTGGAAAACTTCCAGACGGTAGCGTGAAAGAAGGC
TTTCACATATACGCTCCTACTGGTTTGCTTGCAGTACCAAAGGTGCTGGA
CGACAGAACCACTGTTCTTCCAATTGCCATCCGCTGTGGCCAAGGAAACA
TGTACCCCATGTACACAGCCAATCCTGAACATACCGATCCGGTAACGTGG
CTGGCAGCTAAGTGCACCGTTCAGGTTGCTGATGGAGTTATGCTTGAGGC
GCGCTACCACCTTGGGCGCACCCATTTGTTGCTGGAAACATTTATTTGCT
CCATGCGCCGTACGCTCGCGCCAACTCATCCAATTCTGAAGTTGCTTGCT
GTCCATTTTGAAGGAACTCACTTCATAAACTACCTCGGATCTCTTCGTCT
GGCGGCGCCTGGGGGTACAATTGATGTGATCACTGCGCCACAGATTGAAA
CCACGGCTGCGCTGTGTTTGGAAGCAATTCGGCCTCCTTTCAAATTCAAC
GACTGGATGCCCGATAAGGAGTTCGAAGCGCGTGGCGTTCTTGACGCTGA
TTGTCTCAAATATCCCTATCGCGACGATGCGCTGAAGATTTGGGAAGCCA
TCAAAGACTGGGTGCATGCATATGTGACGGCATACTACAAAAGTGACGAC
GATGTTGTCGGAGACAACGAACTGGCGAACTGGAGTCGGGAAATAGTGGA
TCCCAAGCTAGGATCCTTGCCTGGGTTCGGAGAAACGGCAGACGGACAGA
TCAAGACGATCGAATATCTTGTTAGGCTGGTGTCAACATTGATTTACATA
GGCTCTGTGCAACACGCTGCATTGAACTTCGCACAAGGGGCGTTCATGCA
ATTCGTGCCTGCAATGCCTTTGGCCGGATTCGCCCCGGCTCCCACAACGC
CAAAGCCGTTCTCCTCAGTGGACCACTGGGTGGAAGAAATGCTGCCGGAT
ATGCAGGTGGCACGGCGACAACTGAACACGGCGGAGCTACTTGCCGGATT
CCAATGGACCTCATTGGGAGAGTATGGGCGTTACCTAAGCTTTGCGCCAG
ATGAAGTGCAAGATGCATTGAAAATCTTCAGGGAAAGACTGAGCGAAATC
GGCGGGGAGATCCAGAAGAGGAATGCGGTGGAAAGACTGGTGGGACTTCC
TGTGTATGATTTTCTTGTGCCGAAGAACATTCCGCAGTCTACCAACGTGT
GA

protein sequence of Gcaud3035.t1

>Gcaud3035.t1 ID=Gcaud3035.t1|Name=Gcaud3035.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=634bp
MLFGIGLFSDTEVIAIPQHDRENAVKRAKEIEESKKEYQWARDIIGETPM
VDGVPREEHPPIGWVSGIANTIFRVLSNNLAVKYANSKENLREETQKLLF
RLGGITGSVLQKITLGRFDSEEAKKLLDDIGELFDAATETGGKGTCFEEY
KDLFKVFKPDDVAKQDQFLRDDIFGWYRVAGPDPLHIQKLTGDVKDMFPE
LTEDIFQGVKGFSDDSLEEASRENRLFYIDFKEFENLPVGKLPDGSVKEG
FHIYAPTGLLAVPKVLDDRTTVLPIAIRCGQGNMYPMYTANPEHTDPVTW
LAAKCTVQVADGVMLEARYHLGRTHLLLETFICSMRRTLAPTHPILKLLA
VHFEGTHFINYLGSLRLAAPGGTIDVITAPQIETTAALCLEAIRPPFKFN
DWMPDKEFEARGVLDADCLKYPYRDDALKIWEAIKDWVHAYVTAYYKSDD
DVVGDNELANWSREIVDPKLGSLPGFGETADGQIKTIEYLVRLVSTLIYI
GSVQHAALNFAQGAFMQFVPAMPLAGFAPAPTTPKPFSSVDHWVEEMLPD
MQVARRQLNTAELLAGFQWTSLGEYGRYLSFAPDEVQDALKIFRERLSEI
GGEIQKRNAVERLVGLPVYDFLVPKNIPQSTNV*

mRNA from alignment at NODE_328_length_29789_cov_4.262846:10021..11922+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3035.t1 ID=Gcaud3035.t1|Name=Gcaud3035.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1902bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:10021..11922+ (Gracilaria caudata M_176_S67 male)
ATGCTATTTGGCATAGGTCTCTTCTCTGACACAGAGGTCATTGCGATTCC
TCAGCACGACAGGGAAAATGCTGTAAAGCGTGCAAAAGAAATTGAAGAGA
GCAAGAAGGAGTATCAATGGGCTCGTGATATCATCGGGGAAACGCCAATG
GTCGACGGTGTTCCTAGAGAAGAGCATCCGCCCATTGGGTGGGTAAGTGG
AATAGCCAACACCATTTTCAGGGTCCTGTCCAACAATCTCGCTGTCAAAT
ATGCAAACTCCAAAGAGAATCTCCGCGAAGAAACTCAGAAACTACTATTT
AGACTCGGAGGCATCACTGGATCTGTGCTTCAGAAAATTACCTTGGGAAG
ATTTGATTCTGAAGAAGCTAAAAAACTCCTCGATGACATCGGCGAACTTT
TTGATGCTGCTACTGAGACTGGCGGAAAAGGAACTTGTTTCGAAGAATAC
AAAGATCTGTTCAAAGTGTTCAAACCCGATGACGTTGCAAAGCAAGACCA
GTTTCTGCGAGACGACATATTTGGGTGGTATCGAGTGGCTGGTCCAGACC
CGTTGCATATTCAGAAACTCACAGGGGACGTGAAAGATATGTTTCCTGAA
TTGACTGAAGATATCTTTCAAGGTGTGAAAGGTTTCAGTGACGACAGCTT
AGAAGAGGCATCGCGTGAAAACCGCCTCTTCTACATTGACTTCAAAGAAT
TTGAAAATCTCCCGGTTGGAAAACTTCCAGACGGTAGCGTGAAAGAAGGC
TTTCACATATACGCTCCTACTGGTTTGCTTGCAGTACCAAAGGTGCTGGA
CGACAGAACCACTGTTCTTCCAATTGCCATCCGCTGTGGCCAAGGAAACA
TGTACCCCATGTACACAGCCAATCCTGAACATACCGATCCGGTAACGTGG
CTGGCAGCTAAGTGCACCGTTCAGGTTGCTGATGGAGTTATGCTTGAGGC
GCGCTACCACCTTGGGCGCACCCATTTGTTGCTGGAAACATTTATTTGCT
CCATGCGCCGTACGCTCGCGCCAACTCATCCAATTCTGAAGTTGCTTGCT
GTCCATTTTGAAGGAACTCACTTCATAAACTACCTCGGATCTCTTCGTCT
GGCGGCGCCTGGGGGTACAATTGATGTGATCACTGCGCCACAGATTGAAA
CCACGGCTGCGCTGTGTTTGGAAGCAATTCGGCCTCCTTTCAAATTCAAC
GACTGGATGCCCGATAAGGAGTTCGAAGCGCGTGGCGTTCTTGACGCTGA
TTGTCTCAAATATCCCTATCGCGACGATGCGCTGAAGATTTGGGAAGCCA
TCAAAGACTGGGTGCATGCATATGTGACGGCATACTACAAAAGTGACGAC
GATGTTGTCGGAGACAACGAACTGGCGAACTGGAGTCGGGAAATAGTGGA
TCCCAAGCTAGGATCCTTGCCTGGGTTCGGAGAAACGGCAGACGGACAGA
TCAAGACGATCGAATATCTTGTTAGGCTGGTGTCAACATTGATTTACATA
GGCTCTGTGCAACACGCTGCATTGAACTTCGCACAAGGGGCGTTCATGCA
ATTCGTGCCTGCAATGCCTTTGGCCGGATTCGCCCCGGCTCCCACAACGC
CAAAGCCGTTCTCCTCAGTGGACCACTGGGTGGAAGAAATGCTGCCGGAT
ATGCAGGTGGCACGGCGACAACTGAACACGGCGGAGCTACTTGCCGGATT
CCAATGGACCTCATTGGGAGAGTATGGGCGTTACCTAAGCTTTGCGCCAG
ATGAAGTGCAAGATGCATTGAAAATCTTCAGGGAAAGACTGAGCGAAATC
GGCGGGGAGATCCAGAAGAGGAATGCGGTGGAAAGACTGGTGGGACTTCC
TGTGTATGATTTTCTTGTGCCGAAGAACATTCCGCAGTCTACCAACGTGT
GA

Coding sequence (CDS) from alignment at NODE_328_length_29789_cov_4.262846:10021..11922+

>Gcaud3035.t1 ID=Gcaud3035.t1|Name=Gcaud3035.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1902bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:10021..11922+ (Gracilaria caudata M_176_S67 male)
ATGCTATTTGGCATAGGTCTCTTCTCTGACACAGAGGTCATTGCGATTCC
TCAGCACGACAGGGAAAATGCTGTAAAGCGTGCAAAAGAAATTGAAGAGA
GCAAGAAGGAGTATCAATGGGCTCGTGATATCATCGGGGAAACGCCAATG
GTCGACGGTGTTCCTAGAGAAGAGCATCCGCCCATTGGGTGGGTAAGTGG
AATAGCCAACACCATTTTCAGGGTCCTGTCCAACAATCTCGCTGTCAAAT
ATGCAAACTCCAAAGAGAATCTCCGCGAAGAAACTCAGAAACTACTATTT
AGACTCGGAGGCATCACTGGATCTGTGCTTCAGAAAATTACCTTGGGAAG
ATTTGATTCTGAAGAAGCTAAAAAACTCCTCGATGACATCGGCGAACTTT
TTGATGCTGCTACTGAGACTGGCGGAAAAGGAACTTGTTTCGAAGAATAC
AAAGATCTGTTCAAAGTGTTCAAACCCGATGACGTTGCAAAGCAAGACCA
GTTTCTGCGAGACGACATATTTGGGTGGTATCGAGTGGCTGGTCCAGACC
CGTTGCATATTCAGAAACTCACAGGGGACGTGAAAGATATGTTTCCTGAA
TTGACTGAAGATATCTTTCAAGGTGTGAAAGGTTTCAGTGACGACAGCTT
AGAAGAGGCATCGCGTGAAAACCGCCTCTTCTACATTGACTTCAAAGAAT
TTGAAAATCTCCCGGTTGGAAAACTTCCAGACGGTAGCGTGAAAGAAGGC
TTTCACATATACGCTCCTACTGGTTTGCTTGCAGTACCAAAGGTGCTGGA
CGACAGAACCACTGTTCTTCCAATTGCCATCCGCTGTGGCCAAGGAAACA
TGTACCCCATGTACACAGCCAATCCTGAACATACCGATCCGGTAACGTGG
CTGGCAGCTAAGTGCACCGTTCAGGTTGCTGATGGAGTTATGCTTGAGGC
GCGCTACCACCTTGGGCGCACCCATTTGTTGCTGGAAACATTTATTTGCT
CCATGCGCCGTACGCTCGCGCCAACTCATCCAATTCTGAAGTTGCTTGCT
GTCCATTTTGAAGGAACTCACTTCATAAACTACCTCGGATCTCTTCGTCT
GGCGGCGCCTGGGGGTACAATTGATGTGATCACTGCGCCACAGATTGAAA
CCACGGCTGCGCTGTGTTTGGAAGCAATTCGGCCTCCTTTCAAATTCAAC
GACTGGATGCCCGATAAGGAGTTCGAAGCGCGTGGCGTTCTTGACGCTGA
TTGTCTCAAATATCCCTATCGCGACGATGCGCTGAAGATTTGGGAAGCCA
TCAAAGACTGGGTGCATGCATATGTGACGGCATACTACAAAAGTGACGAC
GATGTTGTCGGAGACAACGAACTGGCGAACTGGAGTCGGGAAATAGTGGA
TCCCAAGCTAGGATCCTTGCCTGGGTTCGGAGAAACGGCAGACGGACAGA
TCAAGACGATCGAATATCTTGTTAGGCTGGTGTCAACATTGATTTACATA
GGCTCTGTGCAACACGCTGCATTGAACTTCGCACAAGGGGCGTTCATGCA
ATTCGTGCCTGCAATGCCTTTGGCCGGATTCGCCCCGGCTCCCACAACGC
CAAAGCCGTTCTCCTCAGTGGACCACTGGGTGGAAGAAATGCTGCCGGAT
ATGCAGGTGGCACGGCGACAACTGAACACGGCGGAGCTACTTGCCGGATT
CCAATGGACCTCATTGGGAGAGTATGGGCGTTACCTAAGCTTTGCGCCAG
ATGAAGTGCAAGATGCATTGAAAATCTTCAGGGAAAGACTGAGCGAAATC
GGCGGGGAGATCCAGAAGAGGAATGCGGTGGAAAGACTGGTGGGACTTCC
TGTGTATGATTTTCTTGTGCCGAAGAACATTCCGCAGTCTACCAACGTGT
GA