Gcaud7906.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7906.t1
Unique Name	Gcaud7906.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	195

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_323_length_30158_cov_4.260851	contig	NODE_323_length_30158_cov_4.260851:14435..15123 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3659.XP_004160578.1
Preferred name	eIF(iso)4E
PFAMs	IF4E
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03259
KEGG Pathway	ko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG Module	M00428
GOs	GO:0000339,GO:0000340,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002831,GO:0002832,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0010467,GO:0019538,GO:0031347,GO:0031348,GO:0032101,GO:0032102,GO:0032991,GO:0034518,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048583,GO:0048585,GO:0050687,GO:0050688,GO:0050789,GO:0050896,GO:0051704,GO:0051707,GO:0065007,GO:0071704,GO:0080134,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue	3.4e-50
EggNOG OGs	COG5053@1\|root,KOG1670@2759\|Eukaryota,37JUS@33090\|Viridiplantae,3GE90@35493\|Streptophyta,4JM1J@91835\|fabids
Description	eukaryotic translation initiation factor
COG category	J
BRITE	ko00000,ko00001,ko00002,ko03012,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7906	Gcaud7906	Gracilaria caudata M_176_S67 male	gene	NODE_323_length_30158_cov_4.260851 14435..15123 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7906.t1	Gcaud7906.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_323_length_30158_cov_4.260851 14435..15123 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7906.t1.stop1	Gcaud7906.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_323_length_30158_cov_4.260851 14435..14437 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7906.t1.CDS1	Gcaud7906.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_323_length_30158_cov_4.260851 14435..14861 -
Gcaud7906.t1.CDS2	Gcaud7906.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_323_length_30158_cov_4.260851 14966..15123 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7906.t1.exon1	Gcaud7906.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_323_length_30158_cov_4.260851 14435..14861 -
Gcaud7906.t1.exon2	Gcaud7906.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_323_length_30158_cov_4.260851 14966..15123 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7906.t1.intron1	Gcaud7906.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_323_length_30158_cov_4.260851 14862..14965 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7906.t1.start1	Gcaud7906.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_323_length_30158_cov_4.260851 15121..15123 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_323_length_30158_cov_4.260851:14435..15123-
coding sequence from alignment at NODE_323_length_30158_cov_4.260851:14435..15123-

mRNA sequence

>Gcaud7906.t1 ID=Gcaud7906.t1|Name=Gcaud7906.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=195bp
MAEENDQNDAGPHPLQFKWTLWHDFVASKSRNAAYAANLRPIASFDTVED
FWAVFNSLKEPSQLPSNHTYNLFKFGIDPKWEDPQNVDGGEWRVTFPNSH
TTYLDKCWINTILTVIGEGFGPQESDDIAGIVMNRKRGTNRLAIWTKTAM
DEELQNRIGRRWRETSAITSDQQFLQFKDSIGTSKKAKPRFTIS*

spliced messenger RNA

>Gcaud7906.t1 ID=Gcaud7906.t1|Name=Gcaud7906.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp|location=Sequence derived from alignment at NODE_323_length_30158_cov_4.260851:14435..15123- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAAGAAAACGATCAAAACGACGCTGGACCGCACCCTCTGCAGTT
CAAGTGGACGCTTTGGCACGACTTTGTCGCCAGTAAGAGTCGCAACGCTG
CTTATGCCGCCAATCTTCGTCCGATTGCTTCATTCGATACCGTCGAGGAC
TTTTGGGCCGTGTTCAACAGTCTCAAGGAGCCTTCACAGCTGCCCTCCAA
TCATACCTACAATTTGTTCAAGTTTGGAATTGACCCGAAATGGGAAGATC
CACAAAACGTCGACGGCGGTGAATGGAGAGTCACTTTCCCAAACTCTCAC
ACCACATACCTGGACAAGTGTTGGATAAACACAATCCTCACCGTAATCGG
TGAGGGTTTTGGTCCTCAAGAAAGTGACGATATTGCAGGCATCGTCATGA
ACCGTAAACGTGGAACCAATCGCCTTGCAATTTGGACAAAGACTGCGATG
GACGAGGAACTGCAAAACAGGATCGGTCGTCGTTGGAGAGAGACTTCTGC
CATTACCTCCGACCAACAGTTCCTACAGTTCAAGGACTCCATCGGTACCT
CAAAGAAGGCCAAGCCTCGCTTTACGATTTCATGA

protein sequence of Gcaud7906.t1

>Gcaud7906.t1 ID=Gcaud7906.t1|Name=Gcaud7906.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=195bp
MAEENDQNDAGPHPLQFKWTLWHDFVASKSRNAAYAANLRPIASFDTVED
FWAVFNSLKEPSQLPSNHTYNLFKFGIDPKWEDPQNVDGGEWRVTFPNSH
TTYLDKCWINTILTVIGEGFGPQESDDIAGIVMNRKRGTNRLAIWTKTAM
DEELQNRIGRRWRETSAITSDQQFLQFKDSIGTSKKAKPRFTIS*

mRNA from alignment at NODE_323_length_30158_cov_4.260851:14435..15123-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7906.t1 ID=Gcaud7906.t1|Name=Gcaud7906.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=689bp|location=Sequence derived from alignment at NODE_323_length_30158_cov_4.260851:14435..15123- (Gracilaria caudata M_176_S67 male)
ATGGCTGAAGAAAACGATCAAAACGACGCTGGACCGCACCCTCTGCAGTT
CAAGTGGACGCTTTGGCACGACTTTGTCGCCAGTAAGAGTCGCAACGCTG
CTTATGCCGCCAATCTTCGTCCGATTGCTTCATTCGATACCGTCGAGGAC
TTTTGGGCGTAAGTTCTCAACCGCGCCATCCCCCTTGCTCGTAGCGCTTT
TGCGCCGTTGCGTGCTGACCGCTTTGTTTCATGCTTTCGTTGCTCTGCTT
TTTGTGTTACAGCGTGTTCAACAGTCTCAAGGAGCCTTCACAGCTGCCCT
CCAATCATACCTACAATTTGTTCAAGTTTGGAATTGACCCGAAATGGGAA
GATCCACAAAACGTCGACGGCGGTGAATGGAGAGTCACTTTCCCAAACTC
TCACACCACATACCTGGACAAGTGTTGGATAAACACAATCCTCACCGTAA
TCGGTGAGGGTTTTGGTCCTCAAGAAAGTGACGATATTGCAGGCATCGTC
ATGAACCGTAAACGTGGAACCAATCGCCTTGCAATTTGGACAAAGACTGC
GATGGACGAGGAACTGCAAAACAGGATCGGTCGTCGTTGGAGAGAGACTT
CTGCCATTACCTCCGACCAACAGTTCCTACAGTTCAAGGACTCCATCGGT
ACCTCAAAGAAGGCCAAGCCTCGCTTTACGATTTCATGA

Coding sequence (CDS) from alignment at NODE_323_length_30158_cov_4.260851:14435..15123-

>Gcaud7906.t1 ID=Gcaud7906.t1|Name=Gcaud7906.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=585bp|location=Sequence derived from alignment at NODE_323_length_30158_cov_4.260851:14435..15123- (Gracilaria caudata M_176_S67 male)
ATGGCTGAAGAAAACGATCAAAACGACGCTGGACCGCACCCTCTGCAGTT
CAAGTGGACGCTTTGGCACGACTTTGTCGCCAGTAAGAGTCGCAACGCTG
CTTATGCCGCCAATCTTCGTCCGATTGCTTCATTCGATACCGTCGAGGAC
TTTTGGGCCGTGTTCAACAGTCTCAAGGAGCCTTCACAGCTGCCCTCCAA
TCATACCTACAATTTGTTCAAGTTTGGAATTGACCCGAAATGGGAAGATC
CACAAAACGTCGACGGCGGTGAATGGAGAGTCACTTTCCCAAACTCTCAC
ACCACATACCTGGACAAGTGTTGGATAAACACAATCCTCACCGTAATCGG
TGAGGGTTTTGGTCCTCAAGAAAGTGACGATATTGCAGGCATCGTCATGA
ACCGTAAACGTGGAACCAATCGCCTTGCAATTTGGACAAAGACTGCGATG
GACGAGGAACTGCAAAACAGGATCGGTCGTCGTTGGAGAGAGACTTCTGC
CATTACCTCCGACCAACAGTTCCTACAGTTCAAGGACTCCATCGGTACCT
CAAAGAAGGCCAAGCCTCGCTTTACGATTTCATGA