Gcaud8407.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8407.t1
Unique NameGcaud8407.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length68
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1098_length_13905_cov_4.567830contigNODE_1098_length_13905_cov_4.567830:7081..7395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8407Gcaud8407Gracilaria caudata M_176_S67 malegeneNODE_1098_length_13905_cov_4.567830 7081..7395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8407.t1Gcaud8407.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1098_length_13905_cov_4.567830 7081..7395 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8407.t1.stop1Gcaud8407.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1098_length_13905_cov_4.567830 7081..7083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8407.t1.CDS1Gcaud8407.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1098_length_13905_cov_4.567830 7081..7212 -
Gcaud8407.t1.CDS2Gcaud8407.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1098_length_13905_cov_4.567830 7324..7395 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8407.t1.exon1Gcaud8407.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1098_length_13905_cov_4.567830 7081..7212 -
Gcaud8407.t1.exon2Gcaud8407.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1098_length_13905_cov_4.567830 7324..7395 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8407.t1.intron1Gcaud8407.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1098_length_13905_cov_4.567830 7213..7323 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8407.t1.start1Gcaud8407.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1098_length_13905_cov_4.567830 7393..7395 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8407.t1 ID=Gcaud8407.t1|Name=Gcaud8407.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=68bp
MLCLIALSACRAVARDCTKPKIEARRDAYKICAMRRLRMGLAELETSDAR
WRWDRFRSLNQLFLSRL*
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spliced messenger RNA

>Gcaud8407.t1 ID=Gcaud8407.t1|Name=Gcaud8407.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=204bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:7081..7395- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGTTTAATTGCGCTGTCGGCATGTCGCGCCGTGGCGCGTGACTG
CACTAAGCCAAAAATCGAAGCTAGGCGCGACGCGTATAAGATATGTGCCA
TGCGAAGGTTGAGAATGGGCTTGGCAGAACTTGAGACCAGTGACGCGAGA
TGGCGGTGGGACCGATTTCGTTCGCTCAATCAGTTGTTCCTCAGTCGTTT
GTGA
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protein sequence of Gcaud8407.t1

>Gcaud8407.t1 ID=Gcaud8407.t1|Name=Gcaud8407.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=68bp
MLCLIALSACRAVARDCTKPKIEARRDAYKICAMRRLRMGLAELETSDAR
WRWDRFRSLNQLFLSRL*
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mRNA from alignment at NODE_1098_length_13905_cov_4.567830:7081..7395-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8407.t1 ID=Gcaud8407.t1|Name=Gcaud8407.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=315bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:7081..7395- (Gracilaria caudata M_176_S67 male)
ATGCTGTGTTTAATTGCGCTGTCGGCATGTCGCGCCGTGGCGCGTGACTG
CACTAAGCCAAAAATCGAAGCTGTACGTCAACCTCGCAATGCACGCGCCG
TGCACTTGAGCTCAACACCTTCATTTCTTCAACTGCGTACGTAATGCTTA
TCCTGCGTATGGAGAGCGCTTCGAGGACTTCAGAGGCGCGACGCGTATAA
GATATGTGCCATGCGAAGGTTGAGAATGGGCTTGGCAGAACTTGAGACCA
GTGACGCGAGATGGCGGTGGGACCGATTTCGTTCGCTCAATCAGTTGTTC
CTCAGTCGTTTGTGA
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Coding sequence (CDS) from alignment at NODE_1098_length_13905_cov_4.567830:7081..7395-

>Gcaud8407.t1 ID=Gcaud8407.t1|Name=Gcaud8407.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=204bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:7081..7395- (Gracilaria caudata M_176_S67 male)
ATGCTGTGTTTAATTGCGCTGTCGGCATGTCGCGCCGTGGCGCGTGACTG
CACTAAGCCAAAAATCGAAGCTAGGCGCGACGCGTATAAGATATGTGCCA
TGCGAAGGTTGAGAATGGGCTTGGCAGAACTTGAGACCAGTGACGCGAGA
TGGCGGTGGGACCGATTTCGTTCGCTCAATCAGTTGTTCCTCAGTCGTTT
GTGA
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