Gcaud8409.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8409.t1
Unique Name	Gcaud8409.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1098_length_13905_cov_4.567830	contig	NODE_1098_length_13905_cov_4.567830:10513..11565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8409	Gcaud8409	Gracilaria caudata M_176_S67 male	gene	NODE_1098_length_13905_cov_4.567830 10513..11565 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8409.t1.start1	Gcaud8409.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1098_length_13905_cov_4.567830 10513..10515 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8409.t1.CDS1	Gcaud8409.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1098_length_13905_cov_4.567830 10513..11565 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8409.t1.exon1	Gcaud8409.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1098_length_13905_cov_4.567830 10513..11565 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8409.t1.stop1	Gcaud8409.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1098_length_13905_cov_4.567830 11563..11565 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8409.t1	Gcaud8409.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1098_length_13905_cov_4.567830 10513..11565 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1098_length_13905_cov_4.567830:10513..11565+
coding sequence from alignment at NODE_1098_length_13905_cov_4.567830:10513..11565+

mRNA sequence

>Gcaud8409.t1 ID=Gcaud8409.t1|Name=Gcaud8409.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp
MVKHPPVVTLRLSVRELLALTVFGFIFVTLCITSSFTPTSYRLPPLSVLN
SSLSAVNDSAVLERNRARMLTELPACAAHGRANTFLMFFMGHSGSTAIMT
SLKQHSQTSIEGFEPVDHGDFRSGTSEENAKKALKYTSQYFQNASKHGLT
SGFKIRPLHISKAPDAFSKLIRQYNTRIIWSYRSNMLKQAIGDYGIYLGD
RSAFEGIKIKPNQTAPDRSNRSIYIDDIRRLHRFMKNRISGDKQVAAALK
AVSKDHCVLPVSYESFLKDPSVTMLRIQRFLGLNDDEIHESTRAKANPDT
ICDLVQNWEEVCEAFFGCVQWRWMLDDFENGCSCSSLRPSRFGTKFCSIK
*

spliced messenger RNA

>Gcaud8409.t1 ID=Gcaud8409.t1|Name=Gcaud8409.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:10513..11565+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAACACCCCCCCGTTGTGACGTTGAGGCTGTCCGTACGTGAGCT
GCTGGCGCTCACGGTCTTCGGCTTCATATTTGTCACGCTCTGCATAACGA
GCAGCTTCACACCTACGTCCTATAGGCTCCCACCGCTGAGCGTGCTCAAT
TCTTCGCTCTCCGCTGTCAACGATTCGGCCGTGCTGGAGCGCAATCGCGC
TCGCATGTTGACCGAATTGCCCGCCTGCGCCGCACACGGTCGCGCCAACA
CTTTTCTCATGTTCTTCATGGGACACTCTGGCTCCACGGCGATCATGACC
TCCTTGAAGCAGCACTCACAGACTTCGATTGAAGGATTCGAACCGGTTGA
CCACGGCGATTTTCGCTCTGGAACCAGTGAGGAGAACGCCAAGAAAGCCT
TGAAATACACATCGCAGTACTTTCAAAACGCTTCCAAACATGGCCTCACT
TCGGGCTTTAAGATTCGGCCACTACATATATCTAAAGCTCCCGACGCCTT
CTCCAAGCTCATTCGCCAGTACAATACACGCATTATCTGGAGCTATCGCT
CTAACATGCTCAAGCAGGCCATCGGTGATTATGGAATCTATCTTGGCGAC
CGCTCCGCATTTGAAGGTATCAAGATTAAACCGAATCAAACTGCCCCGGA
TCGATCCAATCGTTCCATCTACATTGATGATATTCGGCGCCTGCACCGAT
TTATGAAGAATCGAATTTCAGGTGACAAACAGGTTGCGGCAGCTCTCAAG
GCCGTCAGTAAGGATCACTGCGTGCTGCCAGTGAGTTATGAGAGCTTTTT
GAAGGATCCATCTGTCACCATGTTGCGAATCCAACGCTTTTTGGGCCTAA
ATGATGACGAGATTCACGAATCCACTAGAGCAAAGGCTAATCCTGACACC
ATCTGCGACTTGGTGCAGAACTGGGAGGAGGTGTGTGAGGCATTCTTTGG
TTGCGTTCAGTGGAGATGGATGTTGGATGACTTTGAAAATGGTTGCTCAT
GTTCTTCTTTGCGCCCAAGTCGGTTCGGTACAAAGTTCTGTTCGATCAAG
TAA

protein sequence of Gcaud8409.t1

>Gcaud8409.t1 ID=Gcaud8409.t1|Name=Gcaud8409.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=351bp
MVKHPPVVTLRLSVRELLALTVFGFIFVTLCITSSFTPTSYRLPPLSVLN
SSLSAVNDSAVLERNRARMLTELPACAAHGRANTFLMFFMGHSGSTAIMT
SLKQHSQTSIEGFEPVDHGDFRSGTSEENAKKALKYTSQYFQNASKHGLT
SGFKIRPLHISKAPDAFSKLIRQYNTRIIWSYRSNMLKQAIGDYGIYLGD
RSAFEGIKIKPNQTAPDRSNRSIYIDDIRRLHRFMKNRISGDKQVAAALK
AVSKDHCVLPVSYESFLKDPSVTMLRIQRFLGLNDDEIHESTRAKANPDT
ICDLVQNWEEVCEAFFGCVQWRWMLDDFENGCSCSSLRPSRFGTKFCSIK
*

mRNA from alignment at NODE_1098_length_13905_cov_4.567830:10513..11565+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8409.t1 ID=Gcaud8409.t1|Name=Gcaud8409.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:10513..11565+ (Gracilaria caudata M_176_S67 male)
ATGGTCAAACACCCCCCCGTTGTGACGTTGAGGCTGTCCGTACGTGAGCT
GCTGGCGCTCACGGTCTTCGGCTTCATATTTGTCACGCTCTGCATAACGA
GCAGCTTCACACCTACGTCCTATAGGCTCCCACCGCTGAGCGTGCTCAAT
TCTTCGCTCTCCGCTGTCAACGATTCGGCCGTGCTGGAGCGCAATCGCGC
TCGCATGTTGACCGAATTGCCCGCCTGCGCCGCACACGGTCGCGCCAACA
CTTTTCTCATGTTCTTCATGGGACACTCTGGCTCCACGGCGATCATGACC
TCCTTGAAGCAGCACTCACAGACTTCGATTGAAGGATTCGAACCGGTTGA
CCACGGCGATTTTCGCTCTGGAACCAGTGAGGAGAACGCCAAGAAAGCCT
TGAAATACACATCGCAGTACTTTCAAAACGCTTCCAAACATGGCCTCACT
TCGGGCTTTAAGATTCGGCCACTACATATATCTAAAGCTCCCGACGCCTT
CTCCAAGCTCATTCGCCAGTACAATACACGCATTATCTGGAGCTATCGCT
CTAACATGCTCAAGCAGGCCATCGGTGATTATGGAATCTATCTTGGCGAC
CGCTCCGCATTTGAAGGTATCAAGATTAAACCGAATCAAACTGCCCCGGA
TCGATCCAATCGTTCCATCTACATTGATGATATTCGGCGCCTGCACCGAT
TTATGAAGAATCGAATTTCAGGTGACAAACAGGTTGCGGCAGCTCTCAAG
GCCGTCAGTAAGGATCACTGCGTGCTGCCAGTGAGTTATGAGAGCTTTTT
GAAGGATCCATCTGTCACCATGTTGCGAATCCAACGCTTTTTGGGCCTAA
ATGATGACGAGATTCACGAATCCACTAGAGCAAAGGCTAATCCTGACACC
ATCTGCGACTTGGTGCAGAACTGGGAGGAGGTGTGTGAGGCATTCTTTGG
TTGCGTTCAGTGGAGATGGATGTTGGATGACTTTGAAAATGGTTGCTCAT
GTTCTTCTTTGCGCCCAAGTCGGTTCGGTACAAAGTTCTGTTCGATCAAG
TAA

Coding sequence (CDS) from alignment at NODE_1098_length_13905_cov_4.567830:10513..11565+

>Gcaud8409.t1 ID=Gcaud8409.t1|Name=Gcaud8409.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1053bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:10513..11565+ (Gracilaria caudata M_176_S67 male)
ATGGTCAAACACCCCCCCGTTGTGACGTTGAGGCTGTCCGTACGTGAGCT
GCTGGCGCTCACGGTCTTCGGCTTCATATTTGTCACGCTCTGCATAACGA
GCAGCTTCACACCTACGTCCTATAGGCTCCCACCGCTGAGCGTGCTCAAT
TCTTCGCTCTCCGCTGTCAACGATTCGGCCGTGCTGGAGCGCAATCGCGC
TCGCATGTTGACCGAATTGCCCGCCTGCGCCGCACACGGTCGCGCCAACA
CTTTTCTCATGTTCTTCATGGGACACTCTGGCTCCACGGCGATCATGACC
TCCTTGAAGCAGCACTCACAGACTTCGATTGAAGGATTCGAACCGGTTGA
CCACGGCGATTTTCGCTCTGGAACCAGTGAGGAGAACGCCAAGAAAGCCT
TGAAATACACATCGCAGTACTTTCAAAACGCTTCCAAACATGGCCTCACT
TCGGGCTTTAAGATTCGGCCACTACATATATCTAAAGCTCCCGACGCCTT
CTCCAAGCTCATTCGCCAGTACAATACACGCATTATCTGGAGCTATCGCT
CTAACATGCTCAAGCAGGCCATCGGTGATTATGGAATCTATCTTGGCGAC
CGCTCCGCATTTGAAGGTATCAAGATTAAACCGAATCAAACTGCCCCGGA
TCGATCCAATCGTTCCATCTACATTGATGATATTCGGCGCCTGCACCGAT
TTATGAAGAATCGAATTTCAGGTGACAAACAGGTTGCGGCAGCTCTCAAG
GCCGTCAGTAAGGATCACTGCGTGCTGCCAGTGAGTTATGAGAGCTTTTT
GAAGGATCCATCTGTCACCATGTTGCGAATCCAACGCTTTTTGGGCCTAA
ATGATGACGAGATTCACGAATCCACTAGAGCAAAGGCTAATCCTGACACC
ATCTGCGACTTGGTGCAGAACTGGGAGGAGGTGTGTGAGGCATTCTTTGG
TTGCGTTCAGTGGAGATGGATGTTGGATGACTTTGAAAATGGTTGCTCAT
GTTCTTCTTTGCGCCCAAGTCGGTTCGGTACAAAGTTCTGTTCGATCAAG
TAA