Gcaud8404.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud8404.t1
Unique Name	Gcaud8404.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	497

Homology

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BLAST of Gcaud8404.t1 vs. uniprot
Match: A0A2V3IYY3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYY3_9FLOR)

HSP 1 Score: 601 bits (1549), Expect = 9.110e-211
Identity = 294/482 (61.00%), Postives = 368/482 (76.35%), Query Frame = 0

Query:   10 EAPLSIPSTQPVTDPEETVLIINGNRYDVAQVQAILAQXXXXXXXLTLQFSRLYEQMMLSDVPNEEADGVRLKHFATNAFVNGVLVERPFNKEFIDLMEGLIARVQLETLMYRFKYGHDYVHIEDIRIMIAAILHFKKLHSMYKEIPPNEAQIWPQIPGDLYEEACRIAAKRYEDNSDRRASAMLFSQLLDNRLVTIKTPAVGNVDTYAYVTNGDTSRILWDCIEGIPVEHMTTKGDKIYELSKGDLEMSDALDMLTSDAVRAIRTRKGVTYHNAGFAVIEDWTYSNSKSRYIEVSTNPVLVIXXXXXXXXXXXXXXXAAVLNWGQRGSILQRIFDAVVLLLIFILGALIPITLVTGAKDAHKILLYGRQRLQGLESLAEFHGTTMKTLLTSLARAKGVRFLKEANSCYVEGPKTGTVELPLTLRECDLNDVVIIGKEYAYDLRGKWRYVEAKRGVVHFGNEIPADMPAIAVRHPGKRFVGG 491
            EA     S+  + +  + +L+ING  Y VA +++IL +       LTLQFS++YEQMMLSD PNEEADGVRLKHFATNAFVNGVLVERP +KEF+DL+ GLIARVQLETLMYRFKYGHDY  IEDIRIM++AIL+FK+L ++Y  IP NE++IWPQ+P DLYEE CRIAA RY D+SDRRASA+LFSQLLD+R +T+  P VGN+D YAYVTNG+T++++W+C+ GI +EHM  K  + Y LS  +L + DALD+LT D VRAIRT++G+TYHNA FA IE+W +S+  SRYIEV T  + V                AAVLNWG+R S L R+FD V LLLIF + A IP+ L+ G  + ++ LL GR RLQGLE+LA  H T++K LL +LAR+K VRFLK  NSC+V GPKTGTV+LPL +RECDL DVVIIG+++AYD+RG WRYV+ K+GVVHFG+EIP D PA+A R PG+R VGG
Sbjct:   10 EAGAPASSSGTLLETAQGMLVINGREYSVAYIKSILGKVEASLGKLTLQFSKMYEQMMLSDEPNEEADGVRLKHFATNAFVNGVLVERPVDKEFLDLIGGLIARVQLETLMYRFKYGHDYERIEDIRIMMSAILYFKRLETIYATIPHNESRIWPQVPQDLYEEVCRIAANRYRDHSDRRASALLFSQLLDHRTITMNNPVVGNIDLYAYVTNGNTAKMIWECLSGIRIEHMKAKEGETYHLSSEELTVPDALDILTEDTVRAIRTKEGLTYHNAKFANIEEWKFSDPNSRYIEVRTKSLYVFLSYLYLATAASISVIAAVLNWGRRNSKLHRMFDTVALLLIFTVAAWIPLKLLGGMSNIYRTLLCGRTRLQGLETLAGRHATSVKDLLLALARSKSVRFLKHTNSCFVAGPKTGTVDLPLLVRECDLEDVVIIGEDFAYDVRGTWRYVDGKKGVVHFGDEIPKDTPAVASRIPGRRLVGG 491

The following BLAST results are available for this feature:

BLAST of Gcaud8404.t1 vs. uniprot

BLAST of Gcaud8404.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IYY3_9FLOR	9.110e-211	61.00	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 38..65
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 332..342
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 309..331
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..308
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 343..363
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 364..496
None	No IPR available	TMHMM	TMhelix		coord: 343..365
None	No IPR available	TMHMM	TMhelix		coord: 309..331

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1098_length_13905_cov_4.567830	contig	NODE_1098_length_13905_cov_4.567830:1982..3472 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8404.t1	Gcaud8404.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1098_length_13905_cov_4.567830 1982..3472 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud8404.t1 ID=Gcaud8404.t1|Name=Gcaud8404.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=497bp
MSSPVERFDEAPLSIPSTQPVTDPEETVLIINGNRYDVAQVQAILAQVEA
SLARLTLQFSRLYEQMMLSDVPNEEADGVRLKHFATNAFVNGVLVERPFN
KEFIDLMEGLIARVQLETLMYRFKYGHDYVHIEDIRIMIAAILHFKKLHS
MYKEIPPNEAQIWPQIPGDLYEEACRIAAKRYEDNSDRRASAMLFSQLLD
NRLVTIKTPAVGNVDTYAYVTNGDTSRILWDCIEGIPVEHMTTKGDKIYE
LSKGDLEMSDALDMLTSDAVRAIRTRKGVTYHNAGFAVIEDWTYSNSKSR
YIEVSTNPVLVIIAYLYLAIAIAVSVAAAVLNWGQRGSILQRIFDAVVLL
LIFILGALIPITLVTGAKDAHKILLYGRQRLQGLESLAEFHGTTMKTLLT
SLARAKGVRFLKEANSCYVEGPKTGTVELPLTLRECDLNDVVIIGKEYAY
DLRGKWRYVEAKRGVVHFGNEIPADMPAIAVRHPGKRFVGGSSHSL*