Gcaud1958.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1958.t1
Unique NameGcaud1958.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length366
Homology
BLAST of Gcaud1958.t1 vs. uniprot
Match: A0A2V3IL84_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL84_9FLOR)

HSP 1 Score: 182 bits (462), Expect = 3.230e-51
Identity = 114/313 (36.42%), Postives = 173/313 (55.27%), Query Frame = 0
Query:   51 LHFESGGNVLSVGRTGRNADALIVEDEQFSLGSTVVVDEFNVSIPMNISISSVHPRLEYD-----DASLHARPDLMWSYDFSVENWTISGIDKQIVKGPLYIMYSESDGGNDPYEGYTFARCTLPRLELQIDESKEFISDCTAANLQRSDEIDEGWATLTENHLPLRDMVKTYQGLNMSELGKRSLMVFDVAKSLGRDSCGNSYVAYLPSSEISRTSVIIICALGGITLLNLVAAALSLLITRGTFNWNGSYQRVINLVSNSDSIEQKSCWKISSAPKVDVVVEPAHGHLDSTTYDVHAIPREAASNPVPKAN 358
            +HF +GG +L VGRTG+N DAL+VEDE++S G   ++ E  +   +N+S    + +++ +     + +     DL   Y   V N T      QI +GPLY +      G + Y    F +C +PR++L     +    +C+ A L+RS      +         LR +   +  +++S LG+ S+M+ D+A +L    CG++YVAYLP S ISRTSV+I+CALG   L + VAA +SL ITR TFNWNGSYQRV++L ++S+ +        ++    DVV+E    H       V  +P +A SNPVPKA+
Sbjct:    1 MHFNTGGKILRVGRTGQNLDALLVEDEEYSHGHAHLLKESFIEAKINVSSPRGNYKVDINAWDFLENTTGYPEDLTAHYSTIVRNATYLPTI-QITEGPLYFVICIFGHGTENYMKCAFGKCAVPRVDLPYSRFRLVRGNCSVAFLERSTAKSGIFRGFEPEASSLRYLDLAFGHVDVSFLGQGSIMINDLAITLQSKPCGDTYVAYLPPSNISRTSVVIVCALGITALASCVAAIMSLFITRHTFNWNGSYQRVVSLAASSEQMRVFGRNDFAAVATADVVIEERPTHHGKGLC-VRIVPTDATSNPVPKAS 311          
BLAST of Gcaud1958.t1 vs. uniprot
Match: A0A2V3J1R8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1R8_9FLOR)

HSP 1 Score: 177 bits (450), Expect = 1.300e-48
Identity = 113/303 (37.29%), Postives = 174/303 (57.43%), Query Frame = 0
Query:    1 LITTALIGLSESNSFRVSRNHTVPGDSLCRTKGFSISPHSRLGEASDRVKLHFESGGNVLSVGRTGRNADALIVEDEQFSLGSTVVVDEFNVSIPMNISISSVHPR-------LEYDDASLHA--RPDLMWSYDFSVENWTISGIDKQIVKGPLYIMYSESDG--GNDPYEGYTFARCTLPRLELQIDESKEFISDCTAANLQRSDEIDEGWATLTENHLPLRDMVKTYQGLNMSELGKRSLMVFDVAKSLGRDSCGNSYVAYLPSSEISRTSVIIICALGGITLLNLVAAALSLLITRGTFN 292
            L++ A IG+SES +  V R HT+PG++LC  +G   S    +G A++RV  HF +GG V+SVG+TGRN DA+++E+E+ SLG  VVVD++++   +N+S  ++          L      LH+    D   ++     N T    +  IV GP Y++    +     +  E   F+RC +P +ELQ  E      +C+ A ++R       + +   +  PL+ +  +++GL++SELGKRS MV D+A  L    CG++YVAYLP SE+S  S+ IIC+LG I+L+  V A +S  ITR TFN
Sbjct:   92 LMSLAPIGISESKNLSVHRYHTIPGEALCYREGLYNS--EMIGMATERVIKHFNAGGKVISVGKTGRNHDAILLENERSSLGHAVVVDKWDMEARINVSDGNISTFTLNLTQFLRNTTGYLHSVYSNDFFLTHSVVPMNTTPLPNNGAIVDGPFYVIVCTHNPLVNENKMEKCAFSRCAVPHVELQPGEVVSVRGNCSVATIERQAFKAGAFRSYYGSASPLKYLDISFKGLDVSELGKRSQMVGDLAFILRSRPCGDTYVAYLPPSEVSWVSIAIICSLGTISLVVSVVAIMSFSITRNTFN 392          
The following BLAST results are available for this feature:
BLAST of Gcaud1958.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IL84_9FLOR3.230e-5136.42Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1R8_9FLOR1.300e-4837.29Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..262
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 287..365
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 263..286
NoneNo IPR availableTMHMMTMhelixcoord: 262..284

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3195_length_3856_cov_4.767596contigNODE_3195_length_3856_cov_4.767596:2419..3516 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1958.t1Gcaud1958.t1Gracilaria caudata M_176_S67 malemRNANODE_3195_length_3856_cov_4.767596 2419..3516 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1958.t1 ID=Gcaud1958.t1|Name=Gcaud1958.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=366bp
LITTALIGLSESNSFRVSRNHTVPGDSLCRTKGFSISPHSRLGEASDRVK
LHFESGGNVLSVGRTGRNADALIVEDEQFSLGSTVVVDEFNVSIPMNISI
SSVHPRLEYDDASLHARPDLMWSYDFSVENWTISGIDKQIVKGPLYIMYS
ESDGGNDPYEGYTFARCTLPRLELQIDESKEFISDCTAANLQRSDEIDEG
WATLTENHLPLRDMVKTYQGLNMSELGKRSLMVFDVAKSLGRDSCGNSYV
AYLPSSEISRTSVIIICALGGITLLNLVAAALSLLITRGTFNWNGSYQRV
INLVSNSDSIEQKSCWKISSAPKVDVVVEPAHGHLDSTTYDVHAIPREAA
SNPVPKANVNSINKQ*
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