Gcaud122.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud122.t1
Unique Name	Gcaud122.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	307

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3180_length_3879_cov_4.525871	contig	NODE_3180_length_3879_cov_4.525871:8..928 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud122	Gcaud122	Gracilaria caudata M_176_S67 male	gene	NODE_3180_length_3879_cov_4.525871 8..928 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud122.t1.start1	Gcaud122.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3180_length_3879_cov_4.525871 8..10 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud122.t1.CDS1	Gcaud122.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3180_length_3879_cov_4.525871 8..928 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud122.t1.exon1	Gcaud122.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3180_length_3879_cov_4.525871 8..928 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud122.t1.stop1	Gcaud122.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3180_length_3879_cov_4.525871 926..928 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud122.t1	Gcaud122.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3180_length_3879_cov_4.525871 8..928 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3180_length_3879_cov_4.525871:8..928+
coding sequence from alignment at NODE_3180_length_3879_cov_4.525871:8..928+

mRNA sequence

>Gcaud122.t1 ID=Gcaud122.t1|Name=Gcaud122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=307bp
MNVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDV
LGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALR
QLPFITGLFEAGMLGVKGENHFACSPDGVALIDLTIVRDQLEANGAVHVT
GMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYV
PAEHLCQILHQMFVLNVNLCLYVCVAETGFLYEVLIICDDEQRVLVGNTL
RCCTESGVKWAHEETIVFPDDIDTNMRSLLQSKNFILEGSQRKGSSRRPS
ASNQTI*

spliced messenger RNA

>Gcaud122.t1 ID=Gcaud122.t1|Name=Gcaud122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=921bp|location=Sequence derived from alignment at NODE_3180_length_3879_cov_4.525871:8..928+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTGTTGGAAGAAGGGCTGAAGCTTTCGTGCACTGTCTTGACAAA
GGCACAAAGGTGTGTTGATTGGTTTATACTGCGTCAGTTCAGAGTCACAG
CCACTCTCTCGGGAGCTGCCTTGTTGAGGAGCAAGGATGTTAGGGATGTA
CTAGGACTGTCACCGCAGCGAGGCGACACCACTCAAGCTCAAGCAAATGT
TATGCATGAGTTGACGACAGCTTGGTTCAGTACAAAGCGAAGTACTGAGA
CAATGATACGAGGAACCACGAACGAAAACGTTGTACGAGCTGCACTGCGC
CAGTTACCGTTTATCACAGGATTGTTTGAGGCTGGCATGCTTGGGGTAAA
AGGAGAGAATCACTTCGCATGCTCACCTGATGGCGTTGCTTTGATTGATC
TCACGATAGTTCGTGATCAGCTGGAAGCAAATGGTGCAGTCCATGTCACA
GGAATGCACTTCGGCGACATGTATCTTGGTTTAGCAGCTGTCGAAATCAA
AACAAGGGTTGCAAAATCAACCGTCGGCTCTGCAGTTACGCACGCCACCG
AGTCGCTCATTGTAATGAGGATTGGGGCAAAGGAACTTACAGAGTACGTG
CCGGCTGAACATCTGTGCCAGATTCTACACCAGATGTTCGTTTTGAACGT
TAATCTTTGCTTGTACGTGTGTGTAGCGGAAACAGGATTTCTTTACGAAG
TCTTGATCATTTGCGACGACGAACAGCGCGTTCTTGTCGGAAATACATTG
CGATGTTGTACAGAAAGCGGAGTGAAATGGGCTCATGAAGAAACAATAGT
GTTCCCGGACGACATTGATACAAACATGAGAAGCCTTCTACAATCCAAAA
ATTTCATTCTGGAAGGTAGTCAACGAAAAGGTTcatcgcgaaggccctct
gcctctaatcaaactatttaa

protein sequence of Gcaud122.t1

>Gcaud122.t1 ID=Gcaud122.t1|Name=Gcaud122.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=307bp
MNVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDV
LGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALR
QLPFITGLFEAGMLGVKGENHFACSPDGVALIDLTIVRDQLEANGAVHVT
GMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYV
PAEHLCQILHQMFVLNVNLCLYVCVAETGFLYEVLIICDDEQRVLVGNTL
RCCTESGVKWAHEETIVFPDDIDTNMRSLLQSKNFILEGSQRKGSSRRPS
ASNQTI*

mRNA from alignment at NODE_3180_length_3879_cov_4.525871:8..928+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud122.t1 ID=Gcaud122.t1|Name=Gcaud122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=921bp|location=Sequence derived from alignment at NODE_3180_length_3879_cov_4.525871:8..928+ (Gracilaria caudata M_176_S67 male)
ATGAATGTGTTGGAAGAAGGGCTGAAGCTTTCGTGCACTGTCTTGACAAA
GGCACAAAGGTGTGTTGATTGGTTTATACTGCGTCAGTTCAGAGTCACAG
CCACTCTCTCGGGAGCTGCCTTGTTGAGGAGCAAGGATGTTAGGGATGTA
CTAGGACTGTCACCGCAGCGAGGCGACACCACTCAAGCTCAAGCAAATGT
TATGCATGAGTTGACGACAGCTTGGTTCAGTACAAAGCGAAGTACTGAGA
CAATGATACGAGGAACCACGAACGAAAACGTTGTACGAGCTGCACTGCGC
CAGTTACCGTTTATCACAGGATTGTTTGAGGCTGGCATGCTTGGGGTAAA
AGGAGAGAATCACTTCGCATGCTCACCTGATGGCGTTGCTTTGATTGATC
TCACGATAGTTCGTGATCAGCTGGAAGCAAATGGTGCAGTCCATGTCACA
GGAATGCACTTCGGCGACATGTATCTTGGTTTAGCAGCTGTCGAAATCAA
AACAAGGGTTGCAAAATCAACCGTCGGCTCTGCAGTTACGCACGCCACCG
AGTCGCTCATTGTAATGAGGATTGGGGCAAAGGAACTTACAGAGTACGTG
CCGGCTGAACATCTGTGCCAGATTCTACACCAGATGTTCGTTTTGAACGT
TAATCTTTGCTTGTACGTGTGTGTAGCGGAAACAGGATTTCTTTACGAAG
TCTTGATCATTTGCGACGACGAACAGCGCGTTCTTGTCGGAAATACATTG
CGATGTTGTACAGAAAGCGGAGTGAAATGGGCTCATGAAGAAACAATAGT
GTTCCCGGACGACATTGATACAAACATGAGAAGCCTTCTACAATCCAAAA
ATTTCATTCTGGAAGGTAGTCAACGAAAAGGTTcatcgcgaaggccctct
gcctctaatcaaactatttaa

Coding sequence (CDS) from alignment at NODE_3180_length_3879_cov_4.525871:8..928+

>Gcaud122.t1 ID=Gcaud122.t1|Name=Gcaud122.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=921bp|location=Sequence derived from alignment at NODE_3180_length_3879_cov_4.525871:8..928+ (Gracilaria caudata M_176_S67 male)
ATGAATGTGTTGGAAGAAGGGCTGAAGCTTTCGTGCACTGTCTTGACAAA
GGCACAAAGGTGTGTTGATTGGTTTATACTGCGTCAGTTCAGAGTCACAG
CCACTCTCTCGGGAGCTGCCTTGTTGAGGAGCAAGGATGTTAGGGATGTA
CTAGGACTGTCACCGCAGCGAGGCGACACCACTCAAGCTCAAGCAAATGT
TATGCATGAGTTGACGACAGCTTGGTTCAGTACAAAGCGAAGTACTGAGA
CAATGATACGAGGAACCACGAACGAAAACGTTGTACGAGCTGCACTGCGC
CAGTTACCGTTTATCACAGGATTGTTTGAGGCTGGCATGCTTGGGGTAAA
AGGAGAGAATCACTTCGCATGCTCACCTGATGGCGTTGCTTTGATTGATC
TCACGATAGTTCGTGATCAGCTGGAAGCAAATGGTGCAGTCCATGTCACA
GGAATGCACTTCGGCGACATGTATCTTGGTTTAGCAGCTGTCGAAATCAA
AACAAGGGTTGCAAAATCAACCGTCGGCTCTGCAGTTACGCACGCCACCG
AGTCGCTCATTGTAATGAGGATTGGGGCAAAGGAACTTACAGAGTACGTG
CCGGCTGAACATCTGTGCCAGATTCTACACCAGATGTTCGTTTTGAACGT
TAATCTTTGCTTGTACGTGTGTGTAGCGGAAACAGGATTTCTTTACGAAG
TCTTGATCATTTGCGACGACGAACAGCGCGTTCTTGTCGGAAATACATTG
CGATGTTGTACAGAAAGCGGAGTGAAATGGGCTCATGAAGAAACAATAGT
GTTCCCGGACGACATTGATACAAACATGAGAAGCCTTCTACAATCCAAAA
ATTTCATTCTGGAAGGTAGTCAACGAAAAGGTTcatcgcgaaggccctct
gcctctaatcaaactatttaa