Gcaud3397.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3397.t1
Unique Name	Gcaud3397.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	504

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_100_length_51433_cov_4.606891	contig	NODE_100_length_51433_cov_4.606891:34822..36333 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3750.XP_008355317.1
PFAMs	TAF,TAF6_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03131
KEGG Pathway	ko03022,ko05168,map03022,map05168
GOs	GO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019438,GO:0019538,GO:0030880,GO:0031248,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0051276,GO:0055029,GO:0061695,GO:0070013,GO:0070461,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1905368,GO:1990234
Evalue	7.52e-86
EggNOG OGs	COG5095@1\|root,KOG2549@2759\|Eukaryota,37MFK@33090\|Viridiplantae,3G92R@35493\|Streptophyta,4JRYK@91835\|fabids
Description	Transcription initiation factor TFIID subunit
COG category	K
BRITE	ko00000,ko00001,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3397	Gcaud3397	Gracilaria caudata M_176_S67 male	gene	NODE_100_length_51433_cov_4.606891 34822..36333 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3397.t1.stop1	Gcaud3397.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_100_length_51433_cov_4.606891 34822..34824 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3397.t1.CDS1	Gcaud3397.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_100_length_51433_cov_4.606891 34822..36333 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3397.t1.exon1	Gcaud3397.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_100_length_51433_cov_4.606891 34822..36333 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3397.t1.start1	Gcaud3397.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_100_length_51433_cov_4.606891 36331..36333 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3397.t1	Gcaud3397.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_100_length_51433_cov_4.606891 34822..36333 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_100_length_51433_cov_4.606891:34822..36333-
coding sequence from alignment at NODE_100_length_51433_cov_4.606891:34822..36333-

mRNA sequence

>Gcaud3397.t1 ID=Gcaud3397.t1|Name=Gcaud3397.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp
MASKRAKPSSANSMPHETLRVDTEVIRVIGQSIPSMPSFADSAAGTLAHD
IEYRIREIVQDAMKFMKHSKRNKLTTNDINAALRLRNVAPIVGFSDPKGN
SHKKKDSEAANQQNVYPKSPVGGAKGNHRPQFTAVDGNEDLFFVPDREMT
VKSVIQTNMPLVPLDVNLSKHWLAVAGKQPSIPQNPTRKRKANYEEDADT
EQVTKKQKVPLEVKPIVKHELSRELQLYLEQITTAIQGDDIKHLEQCLYA
VAHEKGIAELLPYFTQFVFKCVTKCDNLPLMFSCMRLVNAILDNDVFDLR
LYLQQVLPAVLTCMLGKRFSGNPRDNHWALRDFTSTVMKKICDRYGQQYP
DIQPRITKTCASALDNTKRPLTTHYGAIVGLAALGRRVLERHLLPRLERK
AYLSTVEKIVKNPNTKPVRREEGCRVFGALFWAVSLARDPSNISAKPSEV
DVHLKHFLDYLPSAETIFKAGEVELGKSFYPHRHDKTETQLTAALLEERK
AKR*

spliced messenger RNA

>Gcaud3397.t1 ID=Gcaud3397.t1|Name=Gcaud3397.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:34822..36333- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCAAGCGAGCAAAGCCATCGAGCGCAAACTCTATGCCCCATGA
GACGCTGCGTGTCGATACGGAGGTCATTCGCGTCATTGGTCAATCCATTC
CGAGTATGCCGTCTTTTGCAGACTCAGCGGCGGGGACACTGGCTCACGAC
ATCGAATATCGAATTCGAGAGATTGTTCAGGACGCAATGAAGTTCATGAA
ACACTCCAAACGCAACAAGTTAACGACAAATGACATAAACGCGGCTCTCC
GGTTGCGAAACGTTGCCCCTATTGTTGGTTTCAGTGATCCCAAAGGGAAC
TCCCACAAGAAGAAAGACAGCGAAGCTGCCAACCAACAAAACGTGTATCC
AAAGAGCCCTGTAGGAGGTGCAAAAGGTAACCATCGCCCTCAATTTACTG
CGGTAGACGGAAACGAGGACTTGTTCTTTGTGCCCGACAGAGAAATGACT
GTGAAATCCGTCATTCAAACAAACATGCCTCTTGTACCCCTTGACGTTAA
CCTTAGTAAGCACTGGCTTGCTGTAGCCGGGAAACAACCCTCTATTCCTC
AAAATCCGACGCGCAAGCGCAAGGCCAACTACGAAGAGGACGCAGACACG
GAACAAGTGACAAAGAAACAGAAAGTTCCATTGGAAGTTAAGCCTATCGT
GAAGCACGAGCTGAGCCGAGAGCTCCAGCTCTACCTAGAGCAAATCACCA
CTGCTATACAGGGAGATGACATTAAGCATCTTGAGCAATGTTTGTATGCA
GTCGCTCATGAGAAAGGAATTGCTGAATTGCTCCCGTACTTCACGCAGTT
CGTGTTCAAGTGTGTAACTAAATGCGACAATCTGCCGCTGATGTTCTCGT
GTATGCGGCTAGTTAACGCAATATTGGACAATGATGTCTTTGACTTGAGG
CTGTATTTACAACAAGTCTTGCCAGCAGTTCTCACTTGCATGCTGGGAAA
ACGGTTTTCTGGGAATCCGAGGGATAATCATTGGGCTCTGCGAGATTTTA
CATCGACGGTAATGAAGAAAATTTGTGATCGATACGGTCAACAATACCCT
GATATCCAACCCCGCATTACCAAAACGTGCGCTTCCGCCCTCGACAACAC
GAAAAGACCTCTTACGACGCACTATGGAGCGATTGTGGGTCTCGCAGCGC
TTGGGCGAAGAGTTTTAGAACGACATTTGCTTCCCCGACTAGAAAGAAAG
GCATATCTTTCAACGGTGGAGAAGATAGTGAAAAATCCCAACACCAAACC
GGTGCGAAGGGAAGAGGGATGCAGAGTTTTCGGAGCATTATTTTGGGCTG
TTTCACTAGCACGAGATCCATCGAACATTTCAGCAAAGCCGTCAGAGGTA
GATGTTCATCTGAAGCATTTTCTTGATTATCTTCCCTCTGCTGAAACCAT
TTTCAAAGCCGGAGAGGTTGAACTCGGCAAAAGCTTTTATCCGCATCGAC
ATGACAAGACGGAAACACAACTAACTGCTGCGCTTCTCGAGGAACGGAAA
GCCAAGAGATAG

protein sequence of Gcaud3397.t1

>Gcaud3397.t1 ID=Gcaud3397.t1|Name=Gcaud3397.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=504bp
MASKRAKPSSANSMPHETLRVDTEVIRVIGQSIPSMPSFADSAAGTLAHD
IEYRIREIVQDAMKFMKHSKRNKLTTNDINAALRLRNVAPIVGFSDPKGN
SHKKKDSEAANQQNVYPKSPVGGAKGNHRPQFTAVDGNEDLFFVPDREMT
VKSVIQTNMPLVPLDVNLSKHWLAVAGKQPSIPQNPTRKRKANYEEDADT
EQVTKKQKVPLEVKPIVKHELSRELQLYLEQITTAIQGDDIKHLEQCLYA
VAHEKGIAELLPYFTQFVFKCVTKCDNLPLMFSCMRLVNAILDNDVFDLR
LYLQQVLPAVLTCMLGKRFSGNPRDNHWALRDFTSTVMKKICDRYGQQYP
DIQPRITKTCASALDNTKRPLTTHYGAIVGLAALGRRVLERHLLPRLERK
AYLSTVEKIVKNPNTKPVRREEGCRVFGALFWAVSLARDPSNISAKPSEV
DVHLKHFLDYLPSAETIFKAGEVELGKSFYPHRHDKTETQLTAALLEERK
AKR*

mRNA from alignment at NODE_100_length_51433_cov_4.606891:34822..36333-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3397.t1 ID=Gcaud3397.t1|Name=Gcaud3397.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:34822..36333- (Gracilaria caudata M_176_S67 male)
ATGGCTTCCAAGCGAGCAAAGCCATCGAGCGCAAACTCTATGCCCCATGA
GACGCTGCGTGTCGATACGGAGGTCATTCGCGTCATTGGTCAATCCATTC
CGAGTATGCCGTCTTTTGCAGACTCAGCGGCGGGGACACTGGCTCACGAC
ATCGAATATCGAATTCGAGAGATTGTTCAGGACGCAATGAAGTTCATGAA
ACACTCCAAACGCAACAAGTTAACGACAAATGACATAAACGCGGCTCTCC
GGTTGCGAAACGTTGCCCCTATTGTTGGTTTCAGTGATCCCAAAGGGAAC
TCCCACAAGAAGAAAGACAGCGAAGCTGCCAACCAACAAAACGTGTATCC
AAAGAGCCCTGTAGGAGGTGCAAAAGGTAACCATCGCCCTCAATTTACTG
CGGTAGACGGAAACGAGGACTTGTTCTTTGTGCCCGACAGAGAAATGACT
GTGAAATCCGTCATTCAAACAAACATGCCTCTTGTACCCCTTGACGTTAA
CCTTAGTAAGCACTGGCTTGCTGTAGCCGGGAAACAACCCTCTATTCCTC
AAAATCCGACGCGCAAGCGCAAGGCCAACTACGAAGAGGACGCAGACACG
GAACAAGTGACAAAGAAACAGAAAGTTCCATTGGAAGTTAAGCCTATCGT
GAAGCACGAGCTGAGCCGAGAGCTCCAGCTCTACCTAGAGCAAATCACCA
CTGCTATACAGGGAGATGACATTAAGCATCTTGAGCAATGTTTGTATGCA
GTCGCTCATGAGAAAGGAATTGCTGAATTGCTCCCGTACTTCACGCAGTT
CGTGTTCAAGTGTGTAACTAAATGCGACAATCTGCCGCTGATGTTCTCGT
GTATGCGGCTAGTTAACGCAATATTGGACAATGATGTCTTTGACTTGAGG
CTGTATTTACAACAAGTCTTGCCAGCAGTTCTCACTTGCATGCTGGGAAA
ACGGTTTTCTGGGAATCCGAGGGATAATCATTGGGCTCTGCGAGATTTTA
CATCGACGGTAATGAAGAAAATTTGTGATCGATACGGTCAACAATACCCT
GATATCCAACCCCGCATTACCAAAACGTGCGCTTCCGCCCTCGACAACAC
GAAAAGACCTCTTACGACGCACTATGGAGCGATTGTGGGTCTCGCAGCGC
TTGGGCGAAGAGTTTTAGAACGACATTTGCTTCCCCGACTAGAAAGAAAG
GCATATCTTTCAACGGTGGAGAAGATAGTGAAAAATCCCAACACCAAACC
GGTGCGAAGGGAAGAGGGATGCAGAGTTTTCGGAGCATTATTTTGGGCTG
TTTCACTAGCACGAGATCCATCGAACATTTCAGCAAAGCCGTCAGAGGTA
GATGTTCATCTGAAGCATTTTCTTGATTATCTTCCCTCTGCTGAAACCAT
TTTCAAAGCCGGAGAGGTTGAACTCGGCAAAAGCTTTTATCCGCATCGAC
ATGACAAGACGGAAACACAACTAACTGCTGCGCTTCTCGAGGAACGGAAA
GCCAAGAGATAG

Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:34822..36333-

>Gcaud3397.t1 ID=Gcaud3397.t1|Name=Gcaud3397.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1512bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:34822..36333- (Gracilaria caudata M_176_S67 male)
ATGGCTTCCAAGCGAGCAAAGCCATCGAGCGCAAACTCTATGCCCCATGA
GACGCTGCGTGTCGATACGGAGGTCATTCGCGTCATTGGTCAATCCATTC
CGAGTATGCCGTCTTTTGCAGACTCAGCGGCGGGGACACTGGCTCACGAC
ATCGAATATCGAATTCGAGAGATTGTTCAGGACGCAATGAAGTTCATGAA
ACACTCCAAACGCAACAAGTTAACGACAAATGACATAAACGCGGCTCTCC
GGTTGCGAAACGTTGCCCCTATTGTTGGTTTCAGTGATCCCAAAGGGAAC
TCCCACAAGAAGAAAGACAGCGAAGCTGCCAACCAACAAAACGTGTATCC
AAAGAGCCCTGTAGGAGGTGCAAAAGGTAACCATCGCCCTCAATTTACTG
CGGTAGACGGAAACGAGGACTTGTTCTTTGTGCCCGACAGAGAAATGACT
GTGAAATCCGTCATTCAAACAAACATGCCTCTTGTACCCCTTGACGTTAA
CCTTAGTAAGCACTGGCTTGCTGTAGCCGGGAAACAACCCTCTATTCCTC
AAAATCCGACGCGCAAGCGCAAGGCCAACTACGAAGAGGACGCAGACACG
GAACAAGTGACAAAGAAACAGAAAGTTCCATTGGAAGTTAAGCCTATCGT
GAAGCACGAGCTGAGCCGAGAGCTCCAGCTCTACCTAGAGCAAATCACCA
CTGCTATACAGGGAGATGACATTAAGCATCTTGAGCAATGTTTGTATGCA
GTCGCTCATGAGAAAGGAATTGCTGAATTGCTCCCGTACTTCACGCAGTT
CGTGTTCAAGTGTGTAACTAAATGCGACAATCTGCCGCTGATGTTCTCGT
GTATGCGGCTAGTTAACGCAATATTGGACAATGATGTCTTTGACTTGAGG
CTGTATTTACAACAAGTCTTGCCAGCAGTTCTCACTTGCATGCTGGGAAA
ACGGTTTTCTGGGAATCCGAGGGATAATCATTGGGCTCTGCGAGATTTTA
CATCGACGGTAATGAAGAAAATTTGTGATCGATACGGTCAACAATACCCT
GATATCCAACCCCGCATTACCAAAACGTGCGCTTCCGCCCTCGACAACAC
GAAAAGACCTCTTACGACGCACTATGGAGCGATTGTGGGTCTCGCAGCGC
TTGGGCGAAGAGTTTTAGAACGACATTTGCTTCCCCGACTAGAAAGAAAG
GCATATCTTTCAACGGTGGAGAAGATAGTGAAAAATCCCAACACCAAACC
GGTGCGAAGGGAAGAGGGATGCAGAGTTTTCGGAGCATTATTTTGGGCTG
TTTCACTAGCACGAGATCCATCGAACATTTCAGCAAAGCCGTCAGAGGTA
GATGTTCATCTGAAGCATTTTCTTGATTATCTTCCCTCTGCTGAAACCAT
TTTCAAAGCCGGAGAGGTTGAACTCGGCAAAAGCTTTTATCCGCATCGAC
ATGACAAGACGGAAACACAACTAACTGCTGCGCTTCTCGAGGAACGGAAA
GCCAAGAGATAG