Gcaud7621.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7621.t1
Unique Name	Gcaud7621.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3121_length_4000_cov_4.627526	contig	NODE_3121_length_4000_cov_4.627526:200..1404 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7621	Gcaud7621	Gracilaria caudata M_176_S67 male	gene	NODE_3121_length_4000_cov_4.627526 200..1404 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7621.t1	Gcaud7621.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3121_length_4000_cov_4.627526 200..1404 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7621.t1.CDS1	Gcaud7621.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3121_length_4000_cov_4.627526 200..1355 +
Gcaud7621.t1.CDS2	Gcaud7621.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_3121_length_4000_cov_4.627526 1394..1404 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7621.t1.exon1	Gcaud7621.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3121_length_4000_cov_4.627526 200..1355 +
Gcaud7621.t1.exon2	Gcaud7621.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_3121_length_4000_cov_4.627526 1394..1404 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7621.t1.intron1	Gcaud7621.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_3121_length_4000_cov_4.627526 1356..1393 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7621.t1.stop1	Gcaud7621.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3121_length_4000_cov_4.627526 1402..1404 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3121_length_4000_cov_4.627526:200..1404+
coding sequence from alignment at NODE_3121_length_4000_cov_4.627526:200..1404+

mRNA sequence

>Gcaud7621.t1 ID=Gcaud7621.t1|Name=Gcaud7621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=389bp
EGTADARADRTGRNIFITSSVSLFYAGSRPALDVERLESRLRLIEQYARA
GADVPPPPAPVVTAVAGGSSFQRRLVFYNRPPKTGSTIVRIAVKRALDDQ
QLKAAKCFNMIEWNEMGLKTIISRRDVDFYGCHTRMTKDRYDFVSRMHGG
NVTFITNTREPENIILSAYLQENRNRKVADITDEKEMQEEIERYKEHLER
YPVDALYRYHGADVPLITCPAEWVHEDAMRRLAERYEVLIDLSRPEESTT
MMEAVTGLRPDFTGVTRGSAPPRGSAGPKVVAAQRGCVARGSAPPRGSGT
TTGMGIARAISMGGRGMGTGSVSVTAAKASRGVATTTGGILRRDEAGQGL
FVSPSLADVPQVVAPPVAASGAAPVASMGSVRAGRGGK*

spliced messenger RNA

>Gcaud7621.t1 ID=Gcaud7621.t1|Name=Gcaud7621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_3121_length_4000_cov_4.627526:200..1404+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GAAGGAACTGCGGATGCTCGTGCTGATCGCACTGGCCGCAATATATTTAT
CACGTCCAGCGTCTCCCTGTTctatgcagggtcacgtcccgcgctcgacg
tggagcgtctcgaatcacgtctacgtctcattgaacagtacgcgcgagct
ggcgcTGATGTGCCGCCACCGCCGGCTCCTGTGGTAACCGCTGTGGCGGG
CGGCTCTTCGTTCCAGAGGCGTCTCGTGTTTTACAATCGACCGCCTAAAA
CCGGCTCTACTATCGTGCGTATTGCCGTGAAACGAGCGCTAGATGATCAG
CAATTGAAAGCTGCAAAGTGCTTTAACATGATTGAGTGGAATGAAATGGG
TCTGAAGACCATTATCAGCCGACGCGACGTTGACTTTTATGGATGTCACA
CTCGCATGACCAAGGACAGGTACGACTTTGTGAGCCGCATGCACGGTGGC
AATGTGACGTTCATCACGAATACTAGAGAACCGGAGAACATTATTCTTTC
CGCCTACCTGCAAGAGAATCGTAATAGAAAGGTGGCAGACATTACCGATG
AGAAGGAGATGCAGGAGGAAATCGAGAGATACAAGGAGCATTTGGAGAGG
TATCCAGTCGACGCTTTGTACAGGTATCATGGTGCTGATGTTCCACTCAT
CACCTGCCCCGCTGAATGGGTGCACGAAGATGCGATGAGAAGACTGGCCG
AACGCTATGAGGTACTTATCGATCTCAGTCGTCCCGAGGAATCTACAACT
ATGATGGAAGCTGTAACAGGGCTGCGTCCAGACTTTACAGGcgtaacgag
agggagtgcgccccccagaggtagcgcaggtcccaaagtggttgcagccc
aaaggggctgtgttgcaagagggagcgcaccaccaaggggaagcgggacc
acaactggaatgggaattgcgagagccatctcgatgggaggaagaggcat
gggcacaggaagtgttagtgtgactgctgcaaaggcatcacggggagttg
cgacgacgacaggtggaatcttgaggcgggatgaagcaggccaagggctt
tttgtgtcaccatcacttgcagatgtgccgcaagtggtagcaccccctgt
tgccgcatcaggggcagcacCAGTTGCCAGTATGGGTAGTGTGCGGGCAG
GACGGGGTGGAAAGTGA

protein sequence of Gcaud7621.t1

>Gcaud7621.t1 ID=Gcaud7621.t1|Name=Gcaud7621.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=389bp
EGTADARADRTGRNIFITSSVSLFYAGSRPALDVERLESRLRLIEQYARA
GADVPPPPAPVVTAVAGGSSFQRRLVFYNRPPKTGSTIVRIAVKRALDDQ
QLKAAKCFNMIEWNEMGLKTIISRRDVDFYGCHTRMTKDRYDFVSRMHGG
NVTFITNTREPENIILSAYLQENRNRKVADITDEKEMQEEIERYKEHLER
YPVDALYRYHGADVPLITCPAEWVHEDAMRRLAERYEVLIDLSRPEESTT
MMEAVTGLRPDFTGVTRGSAPPRGSAGPKVVAAQRGCVARGSAPPRGSGT
TTGMGIARAISMGGRGMGTGSVSVTAAKASRGVATTTGGILRRDEAGQGL
FVSPSLADVPQVVAPPVAASGAAPVASMGSVRAGRGGK*

mRNA from alignment at NODE_3121_length_4000_cov_4.627526:200..1404+

Legend: polypeptideCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7621.t1 ID=Gcaud7621.t1|Name=Gcaud7621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1205bp|location=Sequence derived from alignment at NODE_3121_length_4000_cov_4.627526:200..1404+ (Gracilaria caudata M_176_S67 male)
GAAGGAACTGCGGATGCTCGTGCTGATCGCACTGGCCGCAATATATTTAT
CACGTCCAGCGTCTCCCTGTTctatgcagggtcacgtcccgcgctcgacg
tggagcgtctcgaatcacgtctacgtctcattgaacagtacgcgcgagct
ggcgcTGATGTGCCGCCACCGCCGGCTCCTGTGGTAACCGCTGTGGCGGG
CGGCTCTTCGTTCCAGAGGCGTCTCGTGTTTTACAATCGACCGCCTAAAA
CCGGCTCTACTATCGTGCGTATTGCCGTGAAACGAGCGCTAGATGATCAG
CAATTGAAAGCTGCAAAGTGCTTTAACATGATTGAGTGGAATGAAATGGG
TCTGAAGACCATTATCAGCCGACGCGACGTTGACTTTTATGGATGTCACA
CTCGCATGACCAAGGACAGGTACGACTTTGTGAGCCGCATGCACGGTGGC
AATGTGACGTTCATCACGAATACTAGAGAACCGGAGAACATTATTCTTTC
CGCCTACCTGCAAGAGAATCGTAATAGAAAGGTGGCAGACATTACCGATG
AGAAGGAGATGCAGGAGGAAATCGAGAGATACAAGGAGCATTTGGAGAGG
TATCCAGTCGACGCTTTGTACAGGTATCATGGTGCTGATGTTCCACTCAT
CACCTGCCCCGCTGAATGGGTGCACGAAGATGCGATGAGAAGACTGGCCG
AACGCTATGAGGTACTTATCGATCTCAGTCGTCCCGAGGAATCTACAACT
ATGATGGAAGCTGTAACAGGGCTGCGTCCAGACTTTACAGGcgtaacgag
agggagtgcgccccccagaggtagcgcaggtcccaaagtggttgcagccc
aaaggggctgtgttgcaagagggagcgcaccaccaaggggaagcgggacc
acaactggaatgggaattgcgagagccatctcgatgggaggaagaggcat
gggcacaggaagtgttagtgtgactgctgcaaaggcatcacggggagttg
cgacgacgacaggtggaatcttgaggcgggatgaagcaggccaagggctt
tttgtgtcaccatcacttgcagatgtgccgcaagtggtagcaccccctgt
tgccgcatcaggggcagcacCAGTTGCCAGTATGGGTAGTGTGCGGGCAG
GACGGGGTGGGAGTGCAACTAGTGTTTGTGTGAACAGTTCCAAGGTGGAA
AGTGA

Coding sequence (CDS) from alignment at NODE_3121_length_4000_cov_4.627526:200..1404+

>Gcaud7621.t1 ID=Gcaud7621.t1|Name=Gcaud7621.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1167bp|location=Sequence derived from alignment at NODE_3121_length_4000_cov_4.627526:200..1404+ (Gracilaria caudata M_176_S67 male)
GAAGGAACTGCGGATGCTCGTGCTGATCGCACTGGCCGCAATATATTTAT
CACGTCCAGCGTCTCCCTGTTctatgcagggtcacgtcccgcgctcgacg
tggagcgtctcgaatcacgtctacgtctcattgaacagtacgcgcgagct
ggcgcTGATGTGCCGCCACCGCCGGCTCCTGTGGTAACCGCTGTGGCGGG
CGGCTCTTCGTTCCAGAGGCGTCTCGTGTTTTACAATCGACCGCCTAAAA
CCGGCTCTACTATCGTGCGTATTGCCGTGAAACGAGCGCTAGATGATCAG
CAATTGAAAGCTGCAAAGTGCTTTAACATGATTGAGTGGAATGAAATGGG
TCTGAAGACCATTATCAGCCGACGCGACGTTGACTTTTATGGATGTCACA
CTCGCATGACCAAGGACAGGTACGACTTTGTGAGCCGCATGCACGGTGGC
AATGTGACGTTCATCACGAATACTAGAGAACCGGAGAACATTATTCTTTC
CGCCTACCTGCAAGAGAATCGTAATAGAAAGGTGGCAGACATTACCGATG
AGAAGGAGATGCAGGAGGAAATCGAGAGATACAAGGAGCATTTGGAGAGG
TATCCAGTCGACGCTTTGTACAGGTATCATGGTGCTGATGTTCCACTCAT
CACCTGCCCCGCTGAATGGGTGCACGAAGATGCGATGAGAAGACTGGCCG
AACGCTATGAGGTACTTATCGATCTCAGTCGTCCCGAGGAATCTACAACT
ATGATGGAAGCTGTAACAGGGCTGCGTCCAGACTTTACAGGcgtaacgag
agggagtgcgccccccagaggtagcgcaggtcccaaagtggttgcagccc
aaaggggctgtgttgcaagagggagcgcaccaccaaggggaagcgggacc
acaactggaatgggaattgcgagagccatctcgatgggaggaagaggcat
gggcacaggaagtgttagtgtgactgctgcaaaggcatcacggggagttg
cgacgacgacaggtggaatcttgaggcgggatgaagcaggccaagggctt
tttgtgtcaccatcacttgcagatgtgccgcaagtggtagcaccccctgt
tgccgcatcaggggcagcacCAGTTGCCAGTATGGGTAGTGTGCGGGCAG
GACGGGGTGGAAAGTGA