Gcaud2032.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2032.t1
Unique Name	Gcaud2032.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	610

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3110_length_4027_cov_5.071646	contig	NODE_3110_length_4027_cov_5.071646:1422..3251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2032	Gcaud2032	Gracilaria caudata M_176_S67 male	gene	NODE_3110_length_4027_cov_5.071646 1422..3251 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2032.t1.start1	Gcaud2032.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3110_length_4027_cov_5.071646 1422..1424 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2032.t1.CDS1	Gcaud2032.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3110_length_4027_cov_5.071646 1422..3251 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2032.t1.exon1	Gcaud2032.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3110_length_4027_cov_5.071646 1422..3251 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2032.t1.stop1	Gcaud2032.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3110_length_4027_cov_5.071646 3249..3251 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2032.t1	Gcaud2032.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3110_length_4027_cov_5.071646 1422..3251 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3110_length_4027_cov_5.071646:1422..3251+
coding sequence from alignment at NODE_3110_length_4027_cov_5.071646:1422..3251+

mRNA sequence

>Gcaud2032.t1 ID=Gcaud2032.t1|Name=Gcaud2032.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=610bp
MDAVLRNKFCRAVRVSSSGADILSDACDTWEQMSSDHSPAKLLIPFKHAY
PKEKLYFSNLVEEDAIIAVRIRRSGRFSMLLVLMKCFATDQKNISILKIV
DQNDTEVSDFHVRISKDKEVLDDDTIYENSHQRKKAKSCLEHTISALMIW
PKSGDFAMLCESNFGLAVQVLRATSSIPTANTSNMLRRATSYILSDPGTS
WKYITHLLEIGCQVKNNECAMTLLKSMSTISDSADSVALKRYSGCSSERK
IYAVVEAIKLLGWNVVRREVLSLIRSTQSDKAIHCYHLVDLVQREGMDPE
VVNELSRVAIEHVCSKGFPFKNISSLLTSIFVSGSYEVQTNVLQRMLSLS
VQELSQLILGISTILRNKRTDRAMECFRSVLNVYVSKAFKELCDDDNEES
GTQDLPGYLFGKECNRTESFVNVFSILLSWRELNAGLLGAFVDRVVSADN
VEILRGLVHCQNFSEARDCKHARKLIKILIQKLEYPRPKETNEQRKAFVK
GHSLLTEFLRGEQLLFRYDAFSSVTEARNFVTGRFYGDYNPKEHHSAVAK
ITGRGLETKVILTKTDAYHQHELRQYQADQAELLRLRALLRGNTPYQRTV
TSSSKRRRR*

spliced messenger RNA

>Gcaud2032.t1 ID=Gcaud2032.t1|Name=Gcaud2032.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1830bp|location=Sequence derived from alignment at NODE_3110_length_4027_cov_5.071646:1422..3251+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTGTACTTCGAAACAAGTTCTGCAGGGCTGTTAGAGTATCGTC
AAGTGGTGCAGATATTCTATCAGACGCATGCGACACATGGGAGCAAATGT
CTTCTGATCATAGTCCAGCAAAGTTGCTAATACCTTTCAAGCATGCTTAT
CCCAAAGAAAAATTGTACTTCTCGAATCTTGTTGAAGAAGATGCCATAAT
TGCAGTTCGTATCCGAAGAAGCGGAAGATTTTCGATGCTACTCGTTCTCA
TGAAATGTTTTGCGACAGATCAGAAGAACATATCTATTTTGAAGATCGTT
GACCAGAACGATACCGAGGTTTCAGACTTTCATGTAAGAATCTCTAAAGA
TAAGGAAGTTCTTGATGATGACACGATTTATGAGAATTCCCATCAGCGTA
AGAAAGCAAAAAGTTGTTTGGAGCATACAATATCTGCACTCATGATATGG
CCGAAGTCTGGGGATTTCGCGATGTTATGCGAATCAAATTTCGGTCTAGC
AGTACAAGTTCTTCGCGCCACCTCATCAATTCCGACTGCGAATACATCTA
ACATGCTTCGAAGAGCTACTTCATATATTTTATCTGACCCGGGAACCTCA
TGGAAGTATATCACACATTTGTTGGAGATTGGTTGTCAGGTGAAGAACAA
CGAATGTGCCATGACCTTGTTAAAGAGCATGTCAACCATTTCGGATTCAG
CTGATTCCGTAGCTTTGAAAAGGTATAGTGGATGCTCATCGGAAAGAAAA
ATCTACGCTGTCGTGGAGGCCATCAAGTTGTTGGGCTGGAATGTGGTCCG
TCGTGAAGTACTTTCATTAATTCGATCCACTCAGTCCGACAAAGCTATCC
ACTGCTATCATCTTGTCGACCTAGTTCAGAGAGAAGGTATGGACCCCGAA
GTTGTTAACGAATTGAGCAGGGTGGCAATAGAACACGTTTGCTCAAAAGG
ATTTCCGTTCAAAAACATATCTTCCTTGTTAACTTCTATATTCGTTTCTG
GGTCTTATGAAGTGCAGACGAACGTGCTGCAACGTATGCTATCGCTTTCA
GTACAAGAATTAAGCCAGCTAATTCTTGGGATAAGCACTATCTTGAGAAA
CAAACGTACTGACCGGGCCATGGAATGTTTTCGGTCCGTACTAAACGTTT
ACGTCTCGAAAGCGTTCAAGGAACTTTGCGATGATGATAATGAGGAAAGT
GGAACTCAAGACCTTCCGGGGTATTTGTTTGGAAAAGAATGCAACAGGAC
TGAGTCTTTCGTAAACGTGTTCTCGATTCTGTTGTCTTGGCGAGAACTTA
ACGCTGGCTTGTTGGGTGCTTTCGTAGATAGAGTAGTATCAGCTGACAAC
GTTGAAATTCTTCGGGGGTTAGTGCACTGTCAGAACTTTTCTGAGGCAAG
GGATTGCAAACATGCGAGAAAGTTGATCAAGATCCTTATTCAGAAACTTG
AATATCCCAGGCCTAAAGAGACGAATGAGCAGAGAAAGGCGTTTGTTAAA
GGCCATTCTCTACTGACAGAGTTTCTTCGCGGAGAACAACTTCTGTTTAG
GTATGATGCCTTTTCGTCGGTGACGGAAGCTCGTAACTTTGTCACTGGAC
GATTTTATGGGGATTACAACCCCAAAGAACATCACAGTGCTGTAGCTAAA
ATAACGGGACGTGGATTGGAAACGAAAGTTATCCTGACGAAGACAGATGC
CTACCATCAGCATGAATTAAGACAATACCAAGCGGATCAGGCTGAATTAT
TGAGATTACGAGCTCTACTGAGAGGAAATACTCCGTACCAAAGGACAGTC
ACTTCAAGCTCCAAGCGCCGAAGACGGTAG

protein sequence of Gcaud2032.t1

>Gcaud2032.t1 ID=Gcaud2032.t1|Name=Gcaud2032.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=610bp
MDAVLRNKFCRAVRVSSSGADILSDACDTWEQMSSDHSPAKLLIPFKHAY
PKEKLYFSNLVEEDAIIAVRIRRSGRFSMLLVLMKCFATDQKNISILKIV
DQNDTEVSDFHVRISKDKEVLDDDTIYENSHQRKKAKSCLEHTISALMIW
PKSGDFAMLCESNFGLAVQVLRATSSIPTANTSNMLRRATSYILSDPGTS
WKYITHLLEIGCQVKNNECAMTLLKSMSTISDSADSVALKRYSGCSSERK
IYAVVEAIKLLGWNVVRREVLSLIRSTQSDKAIHCYHLVDLVQREGMDPE
VVNELSRVAIEHVCSKGFPFKNISSLLTSIFVSGSYEVQTNVLQRMLSLS
VQELSQLILGISTILRNKRTDRAMECFRSVLNVYVSKAFKELCDDDNEES
GTQDLPGYLFGKECNRTESFVNVFSILLSWRELNAGLLGAFVDRVVSADN
VEILRGLVHCQNFSEARDCKHARKLIKILIQKLEYPRPKETNEQRKAFVK
GHSLLTEFLRGEQLLFRYDAFSSVTEARNFVTGRFYGDYNPKEHHSAVAK
ITGRGLETKVILTKTDAYHQHELRQYQADQAELLRLRALLRGNTPYQRTV
TSSSKRRRR*

mRNA from alignment at NODE_3110_length_4027_cov_5.071646:1422..3251+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2032.t1 ID=Gcaud2032.t1|Name=Gcaud2032.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1830bp|location=Sequence derived from alignment at NODE_3110_length_4027_cov_5.071646:1422..3251+ (Gracilaria caudata M_176_S67 male)
ATGGACGCTGTACTTCGAAACAAGTTCTGCAGGGCTGTTAGAGTATCGTC
AAGTGGTGCAGATATTCTATCAGACGCATGCGACACATGGGAGCAAATGT
CTTCTGATCATAGTCCAGCAAAGTTGCTAATACCTTTCAAGCATGCTTAT
CCCAAAGAAAAATTGTACTTCTCGAATCTTGTTGAAGAAGATGCCATAAT
TGCAGTTCGTATCCGAAGAAGCGGAAGATTTTCGATGCTACTCGTTCTCA
TGAAATGTTTTGCGACAGATCAGAAGAACATATCTATTTTGAAGATCGTT
GACCAGAACGATACCGAGGTTTCAGACTTTCATGTAAGAATCTCTAAAGA
TAAGGAAGTTCTTGATGATGACACGATTTATGAGAATTCCCATCAGCGTA
AGAAAGCAAAAAGTTGTTTGGAGCATACAATATCTGCACTCATGATATGG
CCGAAGTCTGGGGATTTCGCGATGTTATGCGAATCAAATTTCGGTCTAGC
AGTACAAGTTCTTCGCGCCACCTCATCAATTCCGACTGCGAATACATCTA
ACATGCTTCGAAGAGCTACTTCATATATTTTATCTGACCCGGGAACCTCA
TGGAAGTATATCACACATTTGTTGGAGATTGGTTGTCAGGTGAAGAACAA
CGAATGTGCCATGACCTTGTTAAAGAGCATGTCAACCATTTCGGATTCAG
CTGATTCCGTAGCTTTGAAAAGGTATAGTGGATGCTCATCGGAAAGAAAA
ATCTACGCTGTCGTGGAGGCCATCAAGTTGTTGGGCTGGAATGTGGTCCG
TCGTGAAGTACTTTCATTAATTCGATCCACTCAGTCCGACAAAGCTATCC
ACTGCTATCATCTTGTCGACCTAGTTCAGAGAGAAGGTATGGACCCCGAA
GTTGTTAACGAATTGAGCAGGGTGGCAATAGAACACGTTTGCTCAAAAGG
ATTTCCGTTCAAAAACATATCTTCCTTGTTAACTTCTATATTCGTTTCTG
GGTCTTATGAAGTGCAGACGAACGTGCTGCAACGTATGCTATCGCTTTCA
GTACAAGAATTAAGCCAGCTAATTCTTGGGATAAGCACTATCTTGAGAAA
CAAACGTACTGACCGGGCCATGGAATGTTTTCGGTCCGTACTAAACGTTT
ACGTCTCGAAAGCGTTCAAGGAACTTTGCGATGATGATAATGAGGAAAGT
GGAACTCAAGACCTTCCGGGGTATTTGTTTGGAAAAGAATGCAACAGGAC
TGAGTCTTTCGTAAACGTGTTCTCGATTCTGTTGTCTTGGCGAGAACTTA
ACGCTGGCTTGTTGGGTGCTTTCGTAGATAGAGTAGTATCAGCTGACAAC
GTTGAAATTCTTCGGGGGTTAGTGCACTGTCAGAACTTTTCTGAGGCAAG
GGATTGCAAACATGCGAGAAAGTTGATCAAGATCCTTATTCAGAAACTTG
AATATCCCAGGCCTAAAGAGACGAATGAGCAGAGAAAGGCGTTTGTTAAA
GGCCATTCTCTACTGACAGAGTTTCTTCGCGGAGAACAACTTCTGTTTAG
GTATGATGCCTTTTCGTCGGTGACGGAAGCTCGTAACTTTGTCACTGGAC
GATTTTATGGGGATTACAACCCCAAAGAACATCACAGTGCTGTAGCTAAA
ATAACGGGACGTGGATTGGAAACGAAAGTTATCCTGACGAAGACAGATGC
CTACCATCAGCATGAATTAAGACAATACCAAGCGGATCAGGCTGAATTAT
TGAGATTACGAGCTCTACTGAGAGGAAATACTCCGTACCAAAGGACAGTC
ACTTCAAGCTCCAAGCGCCGAAGACGGTAG

Coding sequence (CDS) from alignment at NODE_3110_length_4027_cov_5.071646:1422..3251+

>Gcaud2032.t1 ID=Gcaud2032.t1|Name=Gcaud2032.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1830bp|location=Sequence derived from alignment at NODE_3110_length_4027_cov_5.071646:1422..3251+ (Gracilaria caudata M_176_S67 male)
ATGGACGCTGTACTTCGAAACAAGTTCTGCAGGGCTGTTAGAGTATCGTC
AAGTGGTGCAGATATTCTATCAGACGCATGCGACACATGGGAGCAAATGT
CTTCTGATCATAGTCCAGCAAAGTTGCTAATACCTTTCAAGCATGCTTAT
CCCAAAGAAAAATTGTACTTCTCGAATCTTGTTGAAGAAGATGCCATAAT
TGCAGTTCGTATCCGAAGAAGCGGAAGATTTTCGATGCTACTCGTTCTCA
TGAAATGTTTTGCGACAGATCAGAAGAACATATCTATTTTGAAGATCGTT
GACCAGAACGATACCGAGGTTTCAGACTTTCATGTAAGAATCTCTAAAGA
TAAGGAAGTTCTTGATGATGACACGATTTATGAGAATTCCCATCAGCGTA
AGAAAGCAAAAAGTTGTTTGGAGCATACAATATCTGCACTCATGATATGG
CCGAAGTCTGGGGATTTCGCGATGTTATGCGAATCAAATTTCGGTCTAGC
AGTACAAGTTCTTCGCGCCACCTCATCAATTCCGACTGCGAATACATCTA
ACATGCTTCGAAGAGCTACTTCATATATTTTATCTGACCCGGGAACCTCA
TGGAAGTATATCACACATTTGTTGGAGATTGGTTGTCAGGTGAAGAACAA
CGAATGTGCCATGACCTTGTTAAAGAGCATGTCAACCATTTCGGATTCAG
CTGATTCCGTAGCTTTGAAAAGGTATAGTGGATGCTCATCGGAAAGAAAA
ATCTACGCTGTCGTGGAGGCCATCAAGTTGTTGGGCTGGAATGTGGTCCG
TCGTGAAGTACTTTCATTAATTCGATCCACTCAGTCCGACAAAGCTATCC
ACTGCTATCATCTTGTCGACCTAGTTCAGAGAGAAGGTATGGACCCCGAA
GTTGTTAACGAATTGAGCAGGGTGGCAATAGAACACGTTTGCTCAAAAGG
ATTTCCGTTCAAAAACATATCTTCCTTGTTAACTTCTATATTCGTTTCTG
GGTCTTATGAAGTGCAGACGAACGTGCTGCAACGTATGCTATCGCTTTCA
GTACAAGAATTAAGCCAGCTAATTCTTGGGATAAGCACTATCTTGAGAAA
CAAACGTACTGACCGGGCCATGGAATGTTTTCGGTCCGTACTAAACGTTT
ACGTCTCGAAAGCGTTCAAGGAACTTTGCGATGATGATAATGAGGAAAGT
GGAACTCAAGACCTTCCGGGGTATTTGTTTGGAAAAGAATGCAACAGGAC
TGAGTCTTTCGTAAACGTGTTCTCGATTCTGTTGTCTTGGCGAGAACTTA
ACGCTGGCTTGTTGGGTGCTTTCGTAGATAGAGTAGTATCAGCTGACAAC
GTTGAAATTCTTCGGGGGTTAGTGCACTGTCAGAACTTTTCTGAGGCAAG
GGATTGCAAACATGCGAGAAAGTTGATCAAGATCCTTATTCAGAAACTTG
AATATCCCAGGCCTAAAGAGACGAATGAGCAGAGAAAGGCGTTTGTTAAA
GGCCATTCTCTACTGACAGAGTTTCTTCGCGGAGAACAACTTCTGTTTAG
GTATGATGCCTTTTCGTCGGTGACGGAAGCTCGTAACTTTGTCACTGGAC
GATTTTATGGGGATTACAACCCCAAAGAACATCACAGTGCTGTAGCTAAA
ATAACGGGACGTGGATTGGAAACGAAAGTTATCCTGACGAAGACAGATGC
CTACCATCAGCATGAATTAAGACAATACCAAGCGGATCAGGCTGAATTAT
TGAGATTACGAGCTCTACTGAGAGGAAATACTCCGTACCAAAGGACAGTC
ACTTCAAGCTCCAAGCGCCGAAGACGGTAG