Gcaud8247.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8247.t1
Unique Name	Gcaud8247.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	249

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_308_length_31041_cov_4.463651	contig	NODE_308_length_31041_cov_4.463651:20646..21392 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1108849.XP_002562656.1
PFAMs	Pkinase
Max annot lvl	4751\|Fungi
Evalue	1.18e-47
EggNOG OGs	2AGKR@1\|root,2RZ04@2759\|Eukaryota,3A17F@33154\|Opisthokonta,3P2CN@4751\|Fungi,3QUQD@4890\|Ascomycota,20S3M@147545\|Eurotiomycetes
Description	Lipopolysaccharide kinase (Kdo/WaaP) family
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8247	Gcaud8247	Gracilaria caudata M_176_S67 male	gene	NODE_308_length_31041_cov_4.463651 20646..21392 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8247.t1.start1	Gcaud8247.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_308_length_31041_cov_4.463651 20646..20648 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8247.t1.CDS1	Gcaud8247.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_308_length_31041_cov_4.463651 20646..21392 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8247.t1.exon1	Gcaud8247.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_308_length_31041_cov_4.463651 20646..21392 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8247.t1.stop1	Gcaud8247.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_308_length_31041_cov_4.463651 21390..21392 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8247.t1	Gcaud8247.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_308_length_31041_cov_4.463651 20646..21392 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_308_length_31041_cov_4.463651:20646..21392+
coding sequence from alignment at NODE_308_length_31041_cov_4.463651:20646..21392+

mRNA sequence

>Gcaud8247.t1 ID=Gcaud8247.t1|Name=Gcaud8247.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=249bp
MEILERCEVLTDDENPVFSHSIVVYRDSGTLMIGKTKSHVLGNVQIDFSA
MQSSRICLQDIYPSHTEKFTEFIGHEEKEIFTKRPSLLDYTPDIGDYYKS
LILREAEVGELLKTNPHPNVARYMGCKVDDDRIIGLCWQNYRFSLRDKLE
QLSSFSEVKLWMNGIVKGIAHIHSIGYCHNDINPSNIRFADDGTPVIIDF
DSCQRTGKPLNLKGGTIGWYDENASLSLPENDYFSIRALAEFLVSHID*

spliced messenger RNA

>Gcaud8247.t1 ID=Gcaud8247.t1|Name=Gcaud8247.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:20646..21392+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATACTGGAAAGGTGTGAAGTGTTGACTGATGATGAGAATCCAGT
ATTTTCGCATTCAATCGTTGTGTATCGAGACTCTGGGACTTTGATGATTG
GGAAAACAAAATCTCATGTACTTGGAAACGTTCAGATTGATTTCTCTGCG
ATGCAGAGTAGTAGAATATGTCTGCAAGATATATATCCGTCACACACTGA
AAAGTTCACAGAATTCATAGGACATGAAGAGAAAGAGATATTTACCAAAC
GACCATCACTTCTGGATTACACCCCTGATATTGGAGATTACTATAAATCC
TTAATATTGCGTGAAGCTGAGGTTGGGGAACTTCTAAAGACAAACCCACA
TCCGAACGTTGCCAGATACATGGGTTGCAAGGTTGACGATGATAGAATTA
TAGGGCTGTGTTGGCAGAACTACAGGTTCTCTTTACGAGATAAGCTCGAG
CAACTCAGTTCTTTTTCGGAAGTCAAACTATGGATGAATGGGATTGTTAA
AGGGATCGCCCATATTCATTCCATTGGATACTGCCACAACGACATTAATC
CGAGCAATATACGTTTCGCAGATGACGGTACACCAGTAATTATTGACTTT
GACTCCTGCCAACGTACTGGAAAACCTTTGAATCTCAAAGGGGGTACGAT
TGGTTGGTATGATGAGAATGCTAGCTTGTCCTTGCCGGAGAATGATTATT
TTAGTATACGGGCACTGGCGGAATTCCTTGTGTCGCACATAGACTAA

protein sequence of Gcaud8247.t1

>Gcaud8247.t1 ID=Gcaud8247.t1|Name=Gcaud8247.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=249bp
MEILERCEVLTDDENPVFSHSIVVYRDSGTLMIGKTKSHVLGNVQIDFSA
MQSSRICLQDIYPSHTEKFTEFIGHEEKEIFTKRPSLLDYTPDIGDYYKS
LILREAEVGELLKTNPHPNVARYMGCKVDDDRIIGLCWQNYRFSLRDKLE
QLSSFSEVKLWMNGIVKGIAHIHSIGYCHNDINPSNIRFADDGTPVIIDF
DSCQRTGKPLNLKGGTIGWYDENASLSLPENDYFSIRALAEFLVSHID*

mRNA from alignment at NODE_308_length_31041_cov_4.463651:20646..21392+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8247.t1 ID=Gcaud8247.t1|Name=Gcaud8247.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:20646..21392+ (Gracilaria caudata M_176_S67 male)
ATGGAGATACTGGAAAGGTGTGAAGTGTTGACTGATGATGAGAATCCAGT
ATTTTCGCATTCAATCGTTGTGTATCGAGACTCTGGGACTTTGATGATTG
GGAAAACAAAATCTCATGTACTTGGAAACGTTCAGATTGATTTCTCTGCG
ATGCAGAGTAGTAGAATATGTCTGCAAGATATATATCCGTCACACACTGA
AAAGTTCACAGAATTCATAGGACATGAAGAGAAAGAGATATTTACCAAAC
GACCATCACTTCTGGATTACACCCCTGATATTGGAGATTACTATAAATCC
TTAATATTGCGTGAAGCTGAGGTTGGGGAACTTCTAAAGACAAACCCACA
TCCGAACGTTGCCAGATACATGGGTTGCAAGGTTGACGATGATAGAATTA
TAGGGCTGTGTTGGCAGAACTACAGGTTCTCTTTACGAGATAAGCTCGAG
CAACTCAGTTCTTTTTCGGAAGTCAAACTATGGATGAATGGGATTGTTAA
AGGGATCGCCCATATTCATTCCATTGGATACTGCCACAACGACATTAATC
CGAGCAATATACGTTTCGCAGATGACGGTACACCAGTAATTATTGACTTT
GACTCCTGCCAACGTACTGGAAAACCTTTGAATCTCAAAGGGGGTACGAT
TGGTTGGTATGATGAGAATGCTAGCTTGTCCTTGCCGGAGAATGATTATT
TTAGTATACGGGCACTGGCGGAATTCCTTGTGTCGCACATAGACTAA

Coding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:20646..21392+

>Gcaud8247.t1 ID=Gcaud8247.t1|Name=Gcaud8247.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=747bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:20646..21392+ (Gracilaria caudata M_176_S67 male)
ATGGAGATACTGGAAAGGTGTGAAGTGTTGACTGATGATGAGAATCCAGT
ATTTTCGCATTCAATCGTTGTGTATCGAGACTCTGGGACTTTGATGATTG
GGAAAACAAAATCTCATGTACTTGGAAACGTTCAGATTGATTTCTCTGCG
ATGCAGAGTAGTAGAATATGTCTGCAAGATATATATCCGTCACACACTGA
AAAGTTCACAGAATTCATAGGACATGAAGAGAAAGAGATATTTACCAAAC
GACCATCACTTCTGGATTACACCCCTGATATTGGAGATTACTATAAATCC
TTAATATTGCGTGAAGCTGAGGTTGGGGAACTTCTAAAGACAAACCCACA
TCCGAACGTTGCCAGATACATGGGTTGCAAGGTTGACGATGATAGAATTA
TAGGGCTGTGTTGGCAGAACTACAGGTTCTCTTTACGAGATAAGCTCGAG
CAACTCAGTTCTTTTTCGGAAGTCAAACTATGGATGAATGGGATTGTTAA
AGGGATCGCCCATATTCATTCCATTGGATACTGCCACAACGACATTAATC
CGAGCAATATACGTTTCGCAGATGACGGTACACCAGTAATTATTGACTTT
GACTCCTGCCAACGTACTGGAAAACCTTTGAATCTCAAAGGGGGTACGAT
TGGTTGGTATGATGAGAATGCTAGCTTGTCCTTGCCGGAGAATGATTATT
TTAGTATACGGGCACTGGCGGAATTCCTTGTGTCGCACATAGACTAA