Gcaud8246.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8246.t1
Unique NameGcaud8246.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Homology
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BLAST of Gcaud8246.t1 vs. uniprot
Match: A0A2V3IM46_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM46_9FLOR)

HSP 1 Score: 231 bits (588), Expect = 8.650e-76
Identity = 109/127 (85.83%), Postives = 117/127 (92.13%), Query Frame = 0 
Query:   38 MPSSVKSGYTSDTTPVFKAEAVENRATGDPNYEYTVMRVKVTFRGCAPSNEYILVKSPKSA--CGVKFVPGVMYAVTAKLCRSATPPPGLPASMETYTATSCSYNKPWKSCPYNDKVFLYYSPVAGC 162
            MPS+++SGY SDTTPVFKAEA+ENRATGDPNYEYTVMRVKVTFRGC P+NEY++VKSPKSA  CGV F PG MYAVTAKLCRS+TPPPGLPASMETYTATSCSYNK W SCPYNDKVFLYYSPV GC
Sbjct:    1 MPSNIRSGYDSDTTPVFKAEAIENRATGDPNYEYTVMRVKVTFRGCPPANEYVVVKSPKSAASCGVAFEPGNMYAVTAKLCRSSTPPPGLPASMETYTATSCSYNKRWDSCPYNDKVFLYYSPVQGC 127
The following BLAST results are available for this feature:
BLAST of Gcaud8246.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IM46_9FLOR8.650e-7685.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldGENE3D2.40.50.120coord: 34..162
e-value: 1.2E-7
score: 33.6
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldSUPERFAMILY50242TIMP-likecoord: 34..156
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..162
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_308_length_31041_cov_4.463651contigNODE_308_length_31041_cov_4.463651:18260..18748 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8246.t1Gcaud8246.t1Gracilaria caudata M_176_S67 malemRNANODE_308_length_31041_cov_4.463651 18260..18748 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8246.t1 ID=Gcaud8246.t1|Name=Gcaud8246.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MKFSILAAVFAAAFAVICAQSENVIRQSMSPSKCSCRMPSSVKSGYTSDT
TPVFKAEAVENRATGDPNYEYTVMRVKVTFRGCAPSNEYILVKSPKSACG
VKFVPGVMYAVTAKLCRSATPPPGLPASMETYTATSCSYNKPWKSCPYND
KVFLYYSPVAGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008993TIMP-like_OB-fold