Gcaud8241.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud8241.t1
Unique Name	Gcaud8241.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	316

Homology

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BLAST of Gcaud8241.t1 vs. uniprot
Match: A0A2V3IM56_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM56_9FLOR)

HSP 1 Score: 316 bits (809), Expect = 4.360e-104
Identity = 190/330 (57.58%), Postives = 221/330 (66.97%), Query Frame = 0

Query:    9 SPSLSPRHSDTSLNSVPTPFSACEQP--------PQP-------LPAHASTSTISRSSHASNDDPFLHPPSFTRLPKAKVFVRREPSRIVNRDRPLPPPKKPADQRCVSDIHDVYRVTQRTQPLTDVTATKND-RVRTDLHALVDQLPDAKQVPQWIPSDERRDWHAQYA-FDPCEVEEDSHPSSRWATSLRNLANMYKPKPSKTPDVRGSVLQVQPPTLGERLGISSKGDKRRHASKLSQPTQQSPTCHNAPPATSRC--KKRQNEPRLARSRARD-------TQQQQPEQMSWYADDYVGFLEKPSARLLCQRYRHSWFRFLRRGRAA 312
            SP  SPRHSDTSL SV T  S   +P        P P       LPAHASTSTISR SHASNDD FLHPPSFTRLPKAKVFVRREPSRI++++RPLP PK   D+RCVSDIH+V +     +PLT V   ++  R+RTD+H L+DQLPD   VP WIPSDERRDW AQ + FDPCEVE+   P+SRWATSLR+++N+YK +    P VRGSVLQVQPPTLGERLGI +K DKRRHA+              APPA  R    +R  +   A S   D       T+Q Q E+ S YADDYVGF+EKPS  L  QR+R SW RFLRR R+A
Sbjct:    4 SPPTSPRHSDTSLTSVNTACSVTVKPTAQSHALPPLPHKTSVHKLPAHASTSTISRDSHASNDDHFLHPPSFTRLPKAKVFVRREPSRILSQNRPLPKPKA-VDKRCVSDIHEVCKPP--IKPLTAVNPPQSKARIRTDMHNLIDQLPDVHNVPDWIPSDERRDWTAQQSHFDPCEVEDQ--PTSRWATSLRHISNLYKARSKPPPGVRGSVLQVQPPTLGERLGIPAKNDKRRHATP-------------APPAPGRVLFSRRGRKKHSADSNTTDMDTPFRATKQTQSEEPSRYADDYVGFIEKPSTLLPHQRHRPSWLRFLRRPRSA 315

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BLAST of Gcaud8241.t1 vs. uniprot
Match: R7QHJ6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHJ6_CHOCR)

HSP 1 Score: 81.6 bits (200), Expect = 6.440e-14
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 0

Query:   97 DQRCVSDIHDVYRVTQRT--QPLTDVTATKNDRVRTDLHALVDQL-----PDAKQVPQWIPSDERRDWHAQYAF----------------DPCEVEEDSHPSSRWATSLRNLANMYKPKPSKTPDV--RGSVLQVQPPTLGERLGISSKGDKRR 225
            D RCVSD+H+ +R  +    +P+T    +    V  D   L ++       D   VP W+P DERRDW +                    DPCE  E++  + +W  SLRNL+++ + + SK  ++  RGS+L ++PPT+ ER G+ SK  K R
Sbjct:  143 DPRCVSDLHEAFRARRGAAWEPVTSSLQSDEPPVLRDAETLSEEARGYLSEDDASVPSWLPEDERRDWTSSETIEPEVDFEDEEETPSRHDPCE--EEAVAAKKWIGSLRNLSHLGR-RGSKKENLPMRGSILDIRPPTVRERFGVRSKRRKGR 293

The following BLAST results are available for this feature:

BLAST of Gcaud8241.t1 vs. uniprot

BLAST of Gcaud8241.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IM56_9FLOR	4.360e-104	57.58	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QHJ6_CHOCR	6.440e-14	33.12	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..273
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_308_length_31041_cov_4.463651	contig	NODE_308_length_31041_cov_4.463651:7893..8840 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8241.t1	Gcaud8241.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_308_length_31041_cov_4.463651 7893..8840 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud8241.t1 ID=Gcaud8241.t1|Name=Gcaud8241.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=316bp
MESMRAGSSPSLSPRHSDTSLNSVPTPFSACEQPPQPLPAHASTSTISRS
SHASNDDPFLHPPSFTRLPKAKVFVRREPSRIVNRDRPLPPPKKPADQRC
VSDIHDVYRVTQRTQPLTDVTATKNDRVRTDLHALVDQLPDAKQVPQWIP
SDERRDWHAQYAFDPCEVEEDSHPSSRWATSLRNLANMYKPKPSKTPDVR
GSVLQVQPPTLGERLGISSKGDKRRHASKLSQPTQQSPTCHNAPPATSRC
KKRQNEPRLARSRARDTQQQQPEQMSWYADDYVGFLEKPSARLLCQRYRH
SWFRFLRRGRAARRS*