Gcaud8251.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8251.t1
Unique NameGcaud8251.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length299
Homology
[Close]
BLAST of Gcaud8251.t1 vs. uniprot
Match: A0A2V3IM40_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM40_9FLOR)

HSP 1 Score: 198 bits (503), Expect = 1.330e-58
Identity = 129/300 (43.00%), Postives = 162/300 (54.00%), Query Frame = 0 
Query:    3 RPIAILATLAVGTAARLLIPHLPFFRKRRNQEDPGTPQFEDVTDEEDATHSEQDSATGLSLSSYRAGPSHTRRVPSQPKPVLCAADVLNLLETIAPRSNLCHHSPSQCTFCLEDVKEGQLTRTTPCRHVFHANCLEQWALHATTKLMNAGMYTVARDGVVRCSARFPSCPNCSSLLDVVPRPVWSFFLLSAVTSSLSLSDNRHAARMYPSGMVVRDDVLRPMYVRIPVEESQEA--SDWIEAIDDDENSVSSREDG-------FRQIGMTPLVTTPARTRAEQRGFGRTDTRLAYASQLS 293
            R + I+  +A  +AAR+L+P LPFFR  RNQ    TP         D  H+  +              S     P   KP +    VL LL+ IAP       S + CTFCL+ V+  Q TR TPC HVFHA+CLEQW ++     MN   YTVARDG +RC  R PSCPNCS+LLDV+P+      LL+AV  SLSL     A+ MY +GMVVRD  LR M+V  PV +      SD+      D+NSV+   +G        R  GM  L T  ARTRAEQRG+GR +T LA+ S +S
Sbjct:    2 RVLTIVTAIAAASAARILLPKLPFFR--RNQRRLHTP---------DPHHTRPEQQQH----------SXXXTPPQSHKPHVDHQAVLALLDVIAPCRTDFDSSLANCTFCLDSVRLTQRTRVTPCNHVFHADCLEQWVMYVAADAMNWRAYTVARDGTLRCLLRLPSCPNCSALLDVLPKDQLRTVLLTAVARSLSLKTLGAASEMYQAGMVVRDAALRTMHVGSPVYQCNPPLPSDF------DDNSVTVSSNGVLLGGSHLRHGGMVALTTPTARTRAEQRGWGRANTHLAFTSNVS 274
[Close]
BLAST of Gcaud8251.t1 vs. uniprot
Match: A0A438IS74_VITVI (NEP1-interacting protein 2 n=4 Tax=Vitis TaxID=3603 RepID=A0A438IS74_VITVI)

HSP 1 Score: 57.0 bits (136), Expect = 6.060e-6
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0 
Query:   91 NLLETIAPRSNLCH-----HSPSQCTFCLEDVKEGQLTRTTP-CRHVFHANCLEQW-ALHAT 145
            N +E + P+SN CH     ++   CT CL+D K+G++TR  P CRH FH  C++QW  LH +
Sbjct:  158 NFIEKL-PKSNFCHSNAEMYNEISCTICLQDFKDGEMTRGLPSCRHYFHMECVDQWLTLHGS 218
[Close]
BLAST of Gcaud8251.t1 vs. uniprot
Match: A0A2G9I0Q9_9LAMI (Putative E3 ubiquitin ligase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9I0Q9_9LAMI)

HSP 1 Score: 57.8 bits (138), Expect = 8.630e-6
Identity = 41/108 (37.96%), Postives = 48/108 (44.44%), Query Frame = 0 
Query:  110 CTFCLEDVKEGQLTRTTPCRHVFHANCLEQWALHATTKLMNAGMYTVARDGVVRCSARFPSCPNCSSLLDVVPRPVWSFFLLSAVTSSLSLSDNRHAARMYPSGMVVR 217
            C  CLED   G+  R  PCRH FHA C++ W     T           RD   R SA  P     + LL   P  V S  +LS+V SSL  S  +     YPSG V R
Sbjct:  234 CAICLEDYNVGEKLRILPCRHKFHAICVDAWLTSWRTFCP-----VCKRDA--RTSAGEPPASESTPLLSSNPNSVSSGSVLSSVRSSLISSALQIGPSSYPSGSVSR 334
The following BLAST results are available for this feature:
BLAST of Gcaud8251.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IM40_9FLOR1.330e-5843.00RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A438IS74_VITVI6.060e-643.55NEP1-interacting protein 2 n=4 Tax=Vitis TaxID=360... [more]
A0A2G9I0Q9_9LAMI8.630e-637.96Putative E3 ubiquitin ligase n=1 Tax=Handroanthus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 110..174
e-value: 4.3E-5
score: 32.9
IPR001841Zinc finger, RING-typePFAMPF17123zf-RING_11coord: 109..137
e-value: 7.8E-9
score: 35.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 110..175
score: 10.586141
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 87..180
e-value: 5.8E-12
score: 46.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..72
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..298
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 103..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_308_length_31041_cov_4.463651contigNODE_308_length_31041_cov_4.463651:30076..30972 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8251.t1Gcaud8251.t1Gracilaria caudata M_176_S67 malemRNANODE_308_length_31041_cov_4.463651 30076..30972 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8251.t1 ID=Gcaud8251.t1|Name=Gcaud8251.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=299bp
MPRPIAILATLAVGTAARLLIPHLPFFRKRRNQEDPGTPQFEDVTDEEDA
THSEQDSATGLSLSSYRAGPSHTRRVPSQPKPVLCAADVLNLLETIAPRS
NLCHHSPSQCTFCLEDVKEGQLTRTTPCRHVFHANCLEQWALHATTKLMN
AGMYTVARDGVVRCSARFPSCPNCSSLLDVVPRPVWSFFLLSAVTSSLSL
SDNRHAARMYPSGMVVRDDVLRPMYVRIPVEESQEASDWIEAIDDDENSV
SSREDGFRQIGMTPLVTTPARTRAEQRGFGRTDTRLAYASQLSTGYDH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD