Gcaud8240.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8240.t1
Unique Name	Gcaud8240.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	430

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_308_length_31041_cov_4.463651	contig	NODE_308_length_31041_cov_4.463651:1200..2489 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	57918.XP_004302359.1
PFAMs	Methyltransf_28
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K18164
KEGG Pathway	ko04714,map04714
Evalue	2.59e-60
EggNOG OGs	COG1565@1\|root,KOG2901@2759\|Eukaryota,37KEB@33090\|Viridiplantae,3GDCS@35493\|Streptophyta,4JH9F@91835\|fabids
Description	Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)
COG category	S
BRITE	ko00000,ko00001,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8240	Gcaud8240	Gracilaria caudata M_176_S67 male	gene	NODE_308_length_31041_cov_4.463651 1200..2489 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8240.t1.stop1	Gcaud8240.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_308_length_31041_cov_4.463651 1200..1202 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8240.t1.CDS1	Gcaud8240.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_308_length_31041_cov_4.463651 1200..2489 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8240.t1.exon1	Gcaud8240.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_308_length_31041_cov_4.463651 1200..2489 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8240.t1.start1	Gcaud8240.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_308_length_31041_cov_4.463651 2487..2489 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8240.t1	Gcaud8240.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_308_length_31041_cov_4.463651 1200..2489 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_308_length_31041_cov_4.463651:1200..2489-
coding sequence from alignment at NODE_308_length_31041_cov_4.463651:1200..2489-

mRNA sequence

>Gcaud8240.t1 ID=Gcaud8240.t1|Name=Gcaud8240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=430bp
MVHRNLVRSLNFSKKRSLLSSFFRFCGTSQTSKEPDPSALAKHLHQQIWF
SGPLSVAEYMRICLTHPQHGYYTNHPTIFGAEGDFVTAPYITPVFSQLLG
VWIANHVATTSIQDFELIELGPGTGRMLLDMLPTLNKLRAVPASLTLFEA
SSALRKVQEEALSSLPNKPKMRWATTLSEALDGPSERPVIILAHEFFDAL
PVHILHKVPSQTESQPQWRERLVDVSEDSTVENPSFRFVLSKAATPAVAL
AQSLQEKQALSDRDVVEVCADGISTARRLAESISQRGGAALVVDYGSNMI
TKDTVRALSKHDVTDVLSRPGGCDVTADVNFGHLRHGVSSVPSMRLWGSV
TQREFLLRLGAAERFRVIGRTLIAGGGSDQDIDAKLLRLQQDYDRIVGIG
EHSMGEIYKAAVISHEKDGIPFGFGNEFQ*

spliced messenger RNA

>Gcaud8240.t1 ID=Gcaud8240.t1|Name=Gcaud8240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:1200..2489- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCATAGGAATCTTGTCCGCAGCTTGAATTTCAGTAAGAAGAGATC
GCTGCTTTCTTCTTTCTTCCGCTTCTGTGGCACAAGCCAAACGTCAAAAG
AACCTGATCCATCTGCGTTGGCGAAGCATCTTCATCAACAAATATGGTTC
TCAGGTCCGCTCTCTGTTGCCGAATACATGCGCATTTGTCTGACACATCC
GCAACATGGATATTATACAAACCATCCAACTATTTTCGGTGCAGAGGGAG
ACTTCGTAACAGCACCATACATAACGCCAGTCTTCTCCCAGCTTCTAGGG
GTATGGATTGCCAATCATGTGGCCACGACCTCGATACAGGACTTTGAGCT
TATCGAGCTCGGCCCTGGGACTGGACGTATGTTGCTGGATATGCTCCCAA
CTTTGAACAAACTGCGAGCAGTGCCAGCGTCGCTCACCTTGTTTGAGGCG
AGTTCCGCGCTGCGCAAAGTACAAGAGGAAGCGCTCTCCTCTCTACCTAA
CAAGCCGAAAATGCGCTGGGCAACTACGTTGTCGGAAGCACTCGACGGAC
CATCAGAGAGACCGGTTATTATTCTTGCTCATGAATTCTTTGACGCTTTA
CCGGTGCACATATTGCACAAAGTACCTTCCCAGACAGAATCGCAACCTCA
GTGGCGGGAGCGTCTCGTGGATGTCAGCGAAGACTCTACTGTTGAAAATC
CTAGCTTCCGATTCGTTCTATCGAAAGCAGCTACACCTGCTGTCGCATTA
GCCCAATCGCTGCAAGAAAAACAAGCTCTGTCTGATCGTGATGTTGTTGA
AGTATGCGCTGATGGTATTTCAACTGCGCGCAGACTTGCGGAATCTATTA
GTCAGCGAGGGGGAGCCGCATTAGTTGTGGATTATGGTTCAAACATGATA
ACGAAAGATACCGTGCGCGCTCTTTCAAAGCATGACGTGACAGATGTACT
ATCTCGACCTGGAGGCTGTGATGTGACGGCTGACGTTAATTTCGGTCACC
TTCGCCATGGAGTTTCCAGTGTTCCTTCAATGCGCTTATGGGGAAGCGTA
ACTCAGAGGGAATTCTTGTTGCGCTTAGGAGCTGCTGAGAGGTTTCGTGT
CATTGGCAGAACTCTCATTGCAGGGGGGGGATCTGACCAAGATATTGATG
CGAAGCTGCTAAGATTACAACAGGATTACGATCGAATCGTGGGTATTGGA
GAGCATAGCATGGGAGAGATTTATAAGGCGGCAGTCATATCACACGAAAA
AGACGGTATCCCCTTCGGTTTTGGGAACGAGTTCCAGTAG

protein sequence of Gcaud8240.t1

>Gcaud8240.t1 ID=Gcaud8240.t1|Name=Gcaud8240.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=430bp
MVHRNLVRSLNFSKKRSLLSSFFRFCGTSQTSKEPDPSALAKHLHQQIWF
SGPLSVAEYMRICLTHPQHGYYTNHPTIFGAEGDFVTAPYITPVFSQLLG
VWIANHVATTSIQDFELIELGPGTGRMLLDMLPTLNKLRAVPASLTLFEA
SSALRKVQEEALSSLPNKPKMRWATTLSEALDGPSERPVIILAHEFFDAL
PVHILHKVPSQTESQPQWRERLVDVSEDSTVENPSFRFVLSKAATPAVAL
AQSLQEKQALSDRDVVEVCADGISTARRLAESISQRGGAALVVDYGSNMI
TKDTVRALSKHDVTDVLSRPGGCDVTADVNFGHLRHGVSSVPSMRLWGSV
TQREFLLRLGAAERFRVIGRTLIAGGGSDQDIDAKLLRLQQDYDRIVGIG
EHSMGEIYKAAVISHEKDGIPFGFGNEFQ*

mRNA from alignment at NODE_308_length_31041_cov_4.463651:1200..2489-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8240.t1 ID=Gcaud8240.t1|Name=Gcaud8240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:1200..2489- (Gracilaria caudata M_176_S67 male)
ATGGTTCATAGGAATCTTGTCCGCAGCTTGAATTTCAGTAAGAAGAGATC
GCTGCTTTCTTCTTTCTTCCGCTTCTGTGGCACAAGCCAAACGTCAAAAG
AACCTGATCCATCTGCGTTGGCGAAGCATCTTCATCAACAAATATGGTTC
TCAGGTCCGCTCTCTGTTGCCGAATACATGCGCATTTGTCTGACACATCC
GCAACATGGATATTATACAAACCATCCAACTATTTTCGGTGCAGAGGGAG
ACTTCGTAACAGCACCATACATAACGCCAGTCTTCTCCCAGCTTCTAGGG
GTATGGATTGCCAATCATGTGGCCACGACCTCGATACAGGACTTTGAGCT
TATCGAGCTCGGCCCTGGGACTGGACGTATGTTGCTGGATATGCTCCCAA
CTTTGAACAAACTGCGAGCAGTGCCAGCGTCGCTCACCTTGTTTGAGGCG
AGTTCCGCGCTGCGCAAAGTACAAGAGGAAGCGCTCTCCTCTCTACCTAA
CAAGCCGAAAATGCGCTGGGCAACTACGTTGTCGGAAGCACTCGACGGAC
CATCAGAGAGACCGGTTATTATTCTTGCTCATGAATTCTTTGACGCTTTA
CCGGTGCACATATTGCACAAAGTACCTTCCCAGACAGAATCGCAACCTCA
GTGGCGGGAGCGTCTCGTGGATGTCAGCGAAGACTCTACTGTTGAAAATC
CTAGCTTCCGATTCGTTCTATCGAAAGCAGCTACACCTGCTGTCGCATTA
GCCCAATCGCTGCAAGAAAAACAAGCTCTGTCTGATCGTGATGTTGTTGA
AGTATGCGCTGATGGTATTTCAACTGCGCGCAGACTTGCGGAATCTATTA
GTCAGCGAGGGGGAGCCGCATTAGTTGTGGATTATGGTTCAAACATGATA
ACGAAAGATACCGTGCGCGCTCTTTCAAAGCATGACGTGACAGATGTACT
ATCTCGACCTGGAGGCTGTGATGTGACGGCTGACGTTAATTTCGGTCACC
TTCGCCATGGAGTTTCCAGTGTTCCTTCAATGCGCTTATGGGGAAGCGTA
ACTCAGAGGGAATTCTTGTTGCGCTTAGGAGCTGCTGAGAGGTTTCGTGT
CATTGGCAGAACTCTCATTGCAGGGGGGGGATCTGACCAAGATATTGATG
CGAAGCTGCTAAGATTACAACAGGATTACGATCGAATCGTGGGTATTGGA
GAGCATAGCATGGGAGAGATTTATAAGGCGGCAGTCATATCACACGAAAA
AGACGGTATCCCCTTCGGTTTTGGGAACGAGTTCCAGTAG

Coding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:1200..2489-

>Gcaud8240.t1 ID=Gcaud8240.t1|Name=Gcaud8240.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1290bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:1200..2489- (Gracilaria caudata M_176_S67 male)
ATGGTTCATAGGAATCTTGTCCGCAGCTTGAATTTCAGTAAGAAGAGATC
GCTGCTTTCTTCTTTCTTCCGCTTCTGTGGCACAAGCCAAACGTCAAAAG
AACCTGATCCATCTGCGTTGGCGAAGCATCTTCATCAACAAATATGGTTC
TCAGGTCCGCTCTCTGTTGCCGAATACATGCGCATTTGTCTGACACATCC
GCAACATGGATATTATACAAACCATCCAACTATTTTCGGTGCAGAGGGAG
ACTTCGTAACAGCACCATACATAACGCCAGTCTTCTCCCAGCTTCTAGGG
GTATGGATTGCCAATCATGTGGCCACGACCTCGATACAGGACTTTGAGCT
TATCGAGCTCGGCCCTGGGACTGGACGTATGTTGCTGGATATGCTCCCAA
CTTTGAACAAACTGCGAGCAGTGCCAGCGTCGCTCACCTTGTTTGAGGCG
AGTTCCGCGCTGCGCAAAGTACAAGAGGAAGCGCTCTCCTCTCTACCTAA
CAAGCCGAAAATGCGCTGGGCAACTACGTTGTCGGAAGCACTCGACGGAC
CATCAGAGAGACCGGTTATTATTCTTGCTCATGAATTCTTTGACGCTTTA
CCGGTGCACATATTGCACAAAGTACCTTCCCAGACAGAATCGCAACCTCA
GTGGCGGGAGCGTCTCGTGGATGTCAGCGAAGACTCTACTGTTGAAAATC
CTAGCTTCCGATTCGTTCTATCGAAAGCAGCTACACCTGCTGTCGCATTA
GCCCAATCGCTGCAAGAAAAACAAGCTCTGTCTGATCGTGATGTTGTTGA
AGTATGCGCTGATGGTATTTCAACTGCGCGCAGACTTGCGGAATCTATTA
GTCAGCGAGGGGGAGCCGCATTAGTTGTGGATTATGGTTCAAACATGATA
ACGAAAGATACCGTGCGCGCTCTTTCAAAGCATGACGTGACAGATGTACT
ATCTCGACCTGGAGGCTGTGATGTGACGGCTGACGTTAATTTCGGTCACC
TTCGCCATGGAGTTTCCAGTGTTCCTTCAATGCGCTTATGGGGAAGCGTA
ACTCAGAGGGAATTCTTGTTGCGCTTAGGAGCTGCTGAGAGGTTTCGTGT
CATTGGCAGAACTCTCATTGCAGGGGGGGGATCTGACCAAGATATTGATG
CGAAGCTGCTAAGATTACAACAGGATTACGATCGAATCGTGGGTATTGGA
GAGCATAGCATGGGAGAGATTTATAAGGCGGCAGTCATATCACACGAAAA
AGACGGTATCCCCTTCGGTTTTGGGAACGAGTTCCAGTAG