Gcaud8242.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8242.t1
Unique NameGcaud8242.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length547
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_308_length_31041_cov_4.463651contigNODE_308_length_31041_cov_4.463651:9054..10694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706430.1
PFAMsACP_syn_III_C,Chal_sti_synt_C,FAE1_CUT1_RppA
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15397
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Evalue1.17e-194
EggNOG OGsCOG3424@1|root,2QPKZ@2759|Eukaryota
EC2.3.1.199
Descriptionvery-long-chain 3-ketoacyl-CoA synthase activity
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8242Gcaud8242Gracilaria caudata M_176_S67 malegeneNODE_308_length_31041_cov_4.463651 9054..10694 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8242.t1.stop1Gcaud8242.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_308_length_31041_cov_4.463651 9054..9056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8242.t1.CDS1Gcaud8242.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_308_length_31041_cov_4.463651 9054..10694 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8242.t1.exon1Gcaud8242.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_308_length_31041_cov_4.463651 9054..10694 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8242.t1.start1Gcaud8242.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_308_length_31041_cov_4.463651 10692..10694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8242.t1Gcaud8242.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_308_length_31041_cov_4.463651 9054..10694 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8242.t1 ID=Gcaud8242.t1|Name=Gcaud8242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=547bp
MPALDNPASARRRRNTAERQPENGSTLYSLAESTRLAWERVRRLYATDPH
ARAYSFADVRRGYNSYDPFTSKKIVGAICCVLVATLVPDAYSKREHLAVL
ARDLFRARIADIAVASAVLTALVLVYNFRKPNPVYLIDIETFQPPERYHV
SVDRFMKTTLASNKFDEEAIAFQKKLLGRSGIGSKSAFPVGILEHCHSIP
ENGGDERAVCNMHFAREEAELVLFSCMDALLRRNKLDPKAIDILVVNCSL
FNPTPSLSAMLVNKYKMRSSVRTYNLAGMGCSAGLISLDLAKDLLQVHRN
AICVVVSTENITQNWYLGRERSMLITNTLFRMGGAAVLLTNKASERRRAR
YVLKHTVRTHVGADDLAYDSIFQMEDKTGLRGVKLSKNIMDVAGGALKKN
VTTLAPLVFPLTEHIKFGIHLLRKKVLGQDLAPYIPDFHIAFQHFCIHTG
GRAVIDVMQEALKLTKQDVEASRYALRRYGNTSSASVWYELKFHENMGRV
RRGDRVWQIAFGSGFKCNSAVWECVKNVDGEPEMISEEVLTAVRSQ*
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spliced messenger RNA

>Gcaud8242.t1 ID=Gcaud8242.t1|Name=Gcaud8242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:9054..10694- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCTTAGACAACCCCGCATCCGCCAGACGCCGGCGAAACACCGC
CGAGCGTCAGCCTGAGAATGGCTCCACCTTGTACAGTCTCGCTGAGTCCA
CGCGGTTGGCATGGGAGCGCGTGCGACGTCTGTACGCCACCGATCCGCAC
GCACGAGCCTATTCGTTCGCCGACGTGCGACGTGGCTACAACTCGTACGA
CCCGTTCACCTCCAAGAAGATTGTAGGCGCGATTTGCTGCGTGTTAGTGG
CCACTCTTGTGCCGGACGCTTACTCCAAACGAGAGCACCTGGCAGTTTTG
GCCAGGGATCTGTTCCGAGCGAGAATCGCGGACATTGCGGTGGCTTCCGC
CGTGCTTACTGCGCTCGTGCTTGTTTACAACTTTCGCAAACCTAACCCCG
TGTATCTGATTGATATAGAGACCTTTCAACCACCAGAACGGTACCATGTC
AGTGTGGATCGTTTCATGAAGACTACCTTGGCCTCGAACAAGTTTGATGA
AGAAGCAATAGCCTTCCAGAAGAAACTGCTGGGACGCAGTGGAATAGGTA
GTAAAAGCGCTTTTCCGGTTGGAATCCTTGAACACTGTCATTCCATTCCG
GAGAATGGCGGCGACGAAAGGGCTGTATGTAACATGCATTTTGCAAGAGA
AGAGGCTGAACTGGTATTGTTCAGCTGCATGGACGCGCTTTTACGTCGAA
ACAAATTAGACCCCAAAGCCATCGACATTCTTGTGGTCAATTGCTCACTC
TTCAACCCTACGCCCAGTCTTTCTGCCATGCTTGTCAACAAGTACAAGAT
GAGAAGCTCTGTTCGCACGTACAACCTCGCTGGTATGGGGTGCTCGGCGG
GGCTTATCTCACTCGATCTGGCAAAGGACCTGTTACAAGTACATCGTAAC
GCAATTTGCGTGGTCGTGTCCACAGAAAACATCACACAGAACTGGTACCT
CGGCCGTGAACGTTCGATGCTGATCACAAACACTCTGTTCCGAATGGGTG
GTGCGGCGGTACTATTAACCAACAAAGCAAGCGAGAGGAGACGTGCAAGG
TACGTGCTCAAACACACTGTGCGAACACATGTCGGAGCTGATGATCTGGC
GTACGACTCCATCTTTCAAATGGAAGATAAGACTGGTCTTCGCGGCGTGA
AGCTTTCCAAAAATATCATGGACGTTGCCGGAGGCGCGTTGAAAAAGAAC
GTGACAACATTGGCACCTCTGGTGTTCCCACTTACGGAACACATCAAGTT
CGGAATCCACCTGCTGCGCAAGAAGGTACTTGGGCAAGATCTGGCGCCAT
ACATCCCAGACTTCCACATTGCGTTCCAGCACTTTTGCATTCACACGGGA
GGAAGAGCGGTGATTGACGTAATGCAAGAAGCGTTGAAACTGACGAAGCA
AGACGTAGAAGCGAGTCGATACGCGTTGAGACGGTACGGTAACACGTCAT
CGGCGTCGGTATGGTACGAACTCAAATTCCACGAGAATATGGGGCGTGTA
CGACGAGGGGACCGAGTGTGGCAGATTGCGTTCGGCTCCGGATTCAAGTG
TAACTCCGCGGTGTGGGAATGCGTCAAGAACGTGGACGGCGAACCCGAAA
TGATCTCGGAAGAGGTGCTGACGGCGGTACGCAGCCAGTGA
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protein sequence of Gcaud8242.t1

>Gcaud8242.t1 ID=Gcaud8242.t1|Name=Gcaud8242.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=547bp
MPALDNPASARRRRNTAERQPENGSTLYSLAESTRLAWERVRRLYATDPH
ARAYSFADVRRGYNSYDPFTSKKIVGAICCVLVATLVPDAYSKREHLAVL
ARDLFRARIADIAVASAVLTALVLVYNFRKPNPVYLIDIETFQPPERYHV
SVDRFMKTTLASNKFDEEAIAFQKKLLGRSGIGSKSAFPVGILEHCHSIP
ENGGDERAVCNMHFAREEAELVLFSCMDALLRRNKLDPKAIDILVVNCSL
FNPTPSLSAMLVNKYKMRSSVRTYNLAGMGCSAGLISLDLAKDLLQVHRN
AICVVVSTENITQNWYLGRERSMLITNTLFRMGGAAVLLTNKASERRRAR
YVLKHTVRTHVGADDLAYDSIFQMEDKTGLRGVKLSKNIMDVAGGALKKN
VTTLAPLVFPLTEHIKFGIHLLRKKVLGQDLAPYIPDFHIAFQHFCIHTG
GRAVIDVMQEALKLTKQDVEASRYALRRYGNTSSASVWYELKFHENMGRV
RRGDRVWQIAFGSGFKCNSAVWECVKNVDGEPEMISEEVLTAVRSQ*
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mRNA from alignment at NODE_308_length_31041_cov_4.463651:9054..10694-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8242.t1 ID=Gcaud8242.t1|Name=Gcaud8242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:9054..10694- (Gracilaria caudata M_176_S67 male)
ATGCCCGCCTTAGACAACCCCGCATCCGCCAGACGCCGGCGAAACACCGC
CGAGCGTCAGCCTGAGAATGGCTCCACCTTGTACAGTCTCGCTGAGTCCA
CGCGGTTGGCATGGGAGCGCGTGCGACGTCTGTACGCCACCGATCCGCAC
GCACGAGCCTATTCGTTCGCCGACGTGCGACGTGGCTACAACTCGTACGA
CCCGTTCACCTCCAAGAAGATTGTAGGCGCGATTTGCTGCGTGTTAGTGG
CCACTCTTGTGCCGGACGCTTACTCCAAACGAGAGCACCTGGCAGTTTTG
GCCAGGGATCTGTTCCGAGCGAGAATCGCGGACATTGCGGTGGCTTCCGC
CGTGCTTACTGCGCTCGTGCTTGTTTACAACTTTCGCAAACCTAACCCCG
TGTATCTGATTGATATAGAGACCTTTCAACCACCAGAACGGTACCATGTC
AGTGTGGATCGTTTCATGAAGACTACCTTGGCCTCGAACAAGTTTGATGA
AGAAGCAATAGCCTTCCAGAAGAAACTGCTGGGACGCAGTGGAATAGGTA
GTAAAAGCGCTTTTCCGGTTGGAATCCTTGAACACTGTCATTCCATTCCG
GAGAATGGCGGCGACGAAAGGGCTGTATGTAACATGCATTTTGCAAGAGA
AGAGGCTGAACTGGTATTGTTCAGCTGCATGGACGCGCTTTTACGTCGAA
ACAAATTAGACCCCAAAGCCATCGACATTCTTGTGGTCAATTGCTCACTC
TTCAACCCTACGCCCAGTCTTTCTGCCATGCTTGTCAACAAGTACAAGAT
GAGAAGCTCTGTTCGCACGTACAACCTCGCTGGTATGGGGTGCTCGGCGG
GGCTTATCTCACTCGATCTGGCAAAGGACCTGTTACAAGTACATCGTAAC
GCAATTTGCGTGGTCGTGTCCACAGAAAACATCACACAGAACTGGTACCT
CGGCCGTGAACGTTCGATGCTGATCACAAACACTCTGTTCCGAATGGGTG
GTGCGGCGGTACTATTAACCAACAAAGCAAGCGAGAGGAGACGTGCAAGG
TACGTGCTCAAACACACTGTGCGAACACATGTCGGAGCTGATGATCTGGC
GTACGACTCCATCTTTCAAATGGAAGATAAGACTGGTCTTCGCGGCGTGA
AGCTTTCCAAAAATATCATGGACGTTGCCGGAGGCGCGTTGAAAAAGAAC
GTGACAACATTGGCACCTCTGGTGTTCCCACTTACGGAACACATCAAGTT
CGGAATCCACCTGCTGCGCAAGAAGGTACTTGGGCAAGATCTGGCGCCAT
ACATCCCAGACTTCCACATTGCGTTCCAGCACTTTTGCATTCACACGGGA
GGAAGAGCGGTGATTGACGTAATGCAAGAAGCGTTGAAACTGACGAAGCA
AGACGTAGAAGCGAGTCGATACGCGTTGAGACGGTACGGTAACACGTCAT
CGGCGTCGGTATGGTACGAACTCAAATTCCACGAGAATATGGGGCGTGTA
CGACGAGGGGACCGAGTGTGGCAGATTGCGTTCGGCTCCGGATTCAAGTG
TAACTCCGCGGTGTGGGAATGCGTCAAGAACGTGGACGGCGAACCCGAAA
TGATCTCGGAAGAGGTGCTGACGGCGGTACGCAGCCAGTGA
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Coding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:9054..10694-

>Gcaud8242.t1 ID=Gcaud8242.t1|Name=Gcaud8242.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1641bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:9054..10694- (Gracilaria caudata M_176_S67 male)
ATGCCCGCCTTAGACAACCCCGCATCCGCCAGACGCCGGCGAAACACCGC
CGAGCGTCAGCCTGAGAATGGCTCCACCTTGTACAGTCTCGCTGAGTCCA
CGCGGTTGGCATGGGAGCGCGTGCGACGTCTGTACGCCACCGATCCGCAC
GCACGAGCCTATTCGTTCGCCGACGTGCGACGTGGCTACAACTCGTACGA
CCCGTTCACCTCCAAGAAGATTGTAGGCGCGATTTGCTGCGTGTTAGTGG
CCACTCTTGTGCCGGACGCTTACTCCAAACGAGAGCACCTGGCAGTTTTG
GCCAGGGATCTGTTCCGAGCGAGAATCGCGGACATTGCGGTGGCTTCCGC
CGTGCTTACTGCGCTCGTGCTTGTTTACAACTTTCGCAAACCTAACCCCG
TGTATCTGATTGATATAGAGACCTTTCAACCACCAGAACGGTACCATGTC
AGTGTGGATCGTTTCATGAAGACTACCTTGGCCTCGAACAAGTTTGATGA
AGAAGCAATAGCCTTCCAGAAGAAACTGCTGGGACGCAGTGGAATAGGTA
GTAAAAGCGCTTTTCCGGTTGGAATCCTTGAACACTGTCATTCCATTCCG
GAGAATGGCGGCGACGAAAGGGCTGTATGTAACATGCATTTTGCAAGAGA
AGAGGCTGAACTGGTATTGTTCAGCTGCATGGACGCGCTTTTACGTCGAA
ACAAATTAGACCCCAAAGCCATCGACATTCTTGTGGTCAATTGCTCACTC
TTCAACCCTACGCCCAGTCTTTCTGCCATGCTTGTCAACAAGTACAAGAT
GAGAAGCTCTGTTCGCACGTACAACCTCGCTGGTATGGGGTGCTCGGCGG
GGCTTATCTCACTCGATCTGGCAAAGGACCTGTTACAAGTACATCGTAAC
GCAATTTGCGTGGTCGTGTCCACAGAAAACATCACACAGAACTGGTACCT
CGGCCGTGAACGTTCGATGCTGATCACAAACACTCTGTTCCGAATGGGTG
GTGCGGCGGTACTATTAACCAACAAAGCAAGCGAGAGGAGACGTGCAAGG
TACGTGCTCAAACACACTGTGCGAACACATGTCGGAGCTGATGATCTGGC
GTACGACTCCATCTTTCAAATGGAAGATAAGACTGGTCTTCGCGGCGTGA
AGCTTTCCAAAAATATCATGGACGTTGCCGGAGGCGCGTTGAAAAAGAAC
GTGACAACATTGGCACCTCTGGTGTTCCCACTTACGGAACACATCAAGTT
CGGAATCCACCTGCTGCGCAAGAAGGTACTTGGGCAAGATCTGGCGCCAT
ACATCCCAGACTTCCACATTGCGTTCCAGCACTTTTGCATTCACACGGGA
GGAAGAGCGGTGATTGACGTAATGCAAGAAGCGTTGAAACTGACGAAGCA
AGACGTAGAAGCGAGTCGATACGCGTTGAGACGGTACGGTAACACGTCAT
CGGCGTCGGTATGGTACGAACTCAAATTCCACGAGAATATGGGGCGTGTA
CGACGAGGGGACCGAGTGTGGCAGATTGCGTTCGGCTCCGGATTCAAGTG
TAACTCCGCGGTGTGGGAATGCGTCAAGAACGTGGACGGCGAACCCGAAA
TGATCTCGGAAGAGGTGCTGACGGCGGTACGCAGCCAGTGA
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