Gcaud1330.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1330.t1
Unique NameGcaud1330.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3078_length_4083_cov_4.731463contigNODE_3078_length_4083_cov_4.731463:611..1468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1040989.AWZU01000001_gene5922
PFAMsCreatininase
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00615
KEGG koko:K01470
KEGG ReactionR01884
KEGG Pathwayko00330,map00330
Evalue1.91e-44
EggNOG OGsCOG1402@1|root,COG1402@2|Bacteria,1MXR9@1224|Proteobacteria,2TUFR@28211|Alphaproteobacteria,3JS6R@41294|Bradyrhizobiaceae
EC3.5.2.10
DescriptionCreatinine amidohydrolase
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1330Gcaud1330Gracilaria caudata M_176_S67 malegeneNODE_3078_length_4083_cov_4.731463 611..1468 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1330.t1.stop1Gcaud1330.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3078_length_4083_cov_4.731463 611..613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1330.t1.CDS1Gcaud1330.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3078_length_4083_cov_4.731463 611..1468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1330.t1.exon1Gcaud1330.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3078_length_4083_cov_4.731463 611..1468 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1330.t1.start1Gcaud1330.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3078_length_4083_cov_4.731463 1466..1468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1330.t1Gcaud1330.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3078_length_4083_cov_4.731463 611..1468 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1330.t1 ID=Gcaud1330.t1|Name=Gcaud1330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=286bp
MFVFLSLLVTVYVLCDAKGCSSTVNQWEYMSSPEIARIQLAILPLGSTES
HGPHLPLGTDAILASELAAKAAEGLPDIATLPQSSFGASFEHTGFPGTIA
IRDEILNGFWGDITKSVVRSGVKKLLFVNGHGGQTSNVQIIIRNARFEHN
VLAVSFNVQAMLAKAYGELVDTNLSSDEVLKGIHGGLIETSVMLHLHPEL
VRVDLLRDFRPRPKLHSHLEPYGTVVSYGWYMEDLCRDGAVGNAEASTLE
LGSQIFKRSVMELRAVIEDMIKSDLKELLGVKSNS*
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spliced messenger RNA

>Gcaud1330.t1 ID=Gcaud1330.t1|Name=Gcaud1330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=858bp|location=Sequence derived from alignment at NODE_3078_length_4083_cov_4.731463:611..1468- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGTATTTTTATCGTTGCTCGTGACTGTATACGTTTTGTGCGATGC
AAAAGGTTGCTCAAGTACCGTGAATCAATGGGAATACATGTCAAGCCCCG
AAATTGCTCGCATACAGCTGGCAATATTGCCACTGGGGTCGACAGAATCA
CATGGTCCTCATCTTCCGCTCGGCACAGACGCAATCCTCGCATCAGAACT
GGCGGCTAAAGCCGCTGAAGGGCTGCCCGACATTGCCACTCTACCACAAA
GCTCCTTTGGAGCCAGTTTCGAGCATACCGGGTTCCCCGGTACGATTGCG
ATTCGGGATGAGATTCTTAACGGCTTTTGGGGCGACATAACAAAGAGCGT
AGTTCGGTCAGGGGTGAAAAAACTGCTGTTCGTGAACGGCCATGGGGGTC
AGACCAGCAACGTCCAAATCATCATTCGCAATGCTAGATTCGAGCATAAC
GTGTTAGCCGTCAGTTTCAATGTTCAAGCAATGCTGGCTAAAGCGTACGG
TGAGCTTGTTGACACGAATTTGAGTTCAGATGAAGTACTAAAGGGCATTC
ATGGGGGTTTGATTGAAACGTCTGTTATGCTGCATTTGCATCCCGAATTA
GTTCGGGTTGATCTTCTACGCGACTTCAGGCCAAGACCGAAACTTCACTC
TCACCTGGAACCGTACGGAACTGTTGTGTCTTATGGGTGGTATATGGAGG
ACCTTTGCAGGGATGGAGCGGTTGGGAATGCCGAAGCGTCAACCCTTGAG
CTCGGTTCACAAATCTTTAAACGAAGCGTGATGGAGCTAAGAGCGGTTAT
CGAAGACATGATAAAAAGTGATCTGAAGGAACTTCTGGGGGTGAAAAGCA
ATAGTTAA
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protein sequence of Gcaud1330.t1

>Gcaud1330.t1 ID=Gcaud1330.t1|Name=Gcaud1330.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=286bp
MFVFLSLLVTVYVLCDAKGCSSTVNQWEYMSSPEIARIQLAILPLGSTES
HGPHLPLGTDAILASELAAKAAEGLPDIATLPQSSFGASFEHTGFPGTIA
IRDEILNGFWGDITKSVVRSGVKKLLFVNGHGGQTSNVQIIIRNARFEHN
VLAVSFNVQAMLAKAYGELVDTNLSSDEVLKGIHGGLIETSVMLHLHPEL
VRVDLLRDFRPRPKLHSHLEPYGTVVSYGWYMEDLCRDGAVGNAEASTLE
LGSQIFKRSVMELRAVIEDMIKSDLKELLGVKSNS*
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mRNA from alignment at NODE_3078_length_4083_cov_4.731463:611..1468-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1330.t1 ID=Gcaud1330.t1|Name=Gcaud1330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=858bp|location=Sequence derived from alignment at NODE_3078_length_4083_cov_4.731463:611..1468- (Gracilaria caudata M_176_S67 male)
ATGTTCGTATTTTTATCGTTGCTCGTGACTGTATACGTTTTGTGCGATGC
AAAAGGTTGCTCAAGTACCGTGAATCAATGGGAATACATGTCAAGCCCCG
AAATTGCTCGCATACAGCTGGCAATATTGCCACTGGGGTCGACAGAATCA
CATGGTCCTCATCTTCCGCTCGGCACAGACGCAATCCTCGCATCAGAACT
GGCGGCTAAAGCCGCTGAAGGGCTGCCCGACATTGCCACTCTACCACAAA
GCTCCTTTGGAGCCAGTTTCGAGCATACCGGGTTCCCCGGTACGATTGCG
ATTCGGGATGAGATTCTTAACGGCTTTTGGGGCGACATAACAAAGAGCGT
AGTTCGGTCAGGGGTGAAAAAACTGCTGTTCGTGAACGGCCATGGGGGTC
AGACCAGCAACGTCCAAATCATCATTCGCAATGCTAGATTCGAGCATAAC
GTGTTAGCCGTCAGTTTCAATGTTCAAGCAATGCTGGCTAAAGCGTACGG
TGAGCTTGTTGACACGAATTTGAGTTCAGATGAAGTACTAAAGGGCATTC
ATGGGGGTTTGATTGAAACGTCTGTTATGCTGCATTTGCATCCCGAATTA
GTTCGGGTTGATCTTCTACGCGACTTCAGGCCAAGACCGAAACTTCACTC
TCACCTGGAACCGTACGGAACTGTTGTGTCTTATGGGTGGTATATGGAGG
ACCTTTGCAGGGATGGAGCGGTTGGGAATGCCGAAGCGTCAACCCTTGAG
CTCGGTTCACAAATCTTTAAACGAAGCGTGATGGAGCTAAGAGCGGTTAT
CGAAGACATGATAAAAAGTGATCTGAAGGAACTTCTGGGGGTGAAAAGCA
ATAGTTAA
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Coding sequence (CDS) from alignment at NODE_3078_length_4083_cov_4.731463:611..1468-

>Gcaud1330.t1 ID=Gcaud1330.t1|Name=Gcaud1330.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=858bp|location=Sequence derived from alignment at NODE_3078_length_4083_cov_4.731463:611..1468- (Gracilaria caudata M_176_S67 male)
ATGTTCGTATTTTTATCGTTGCTCGTGACTGTATACGTTTTGTGCGATGC
AAAAGGTTGCTCAAGTACCGTGAATCAATGGGAATACATGTCAAGCCCCG
AAATTGCTCGCATACAGCTGGCAATATTGCCACTGGGGTCGACAGAATCA
CATGGTCCTCATCTTCCGCTCGGCACAGACGCAATCCTCGCATCAGAACT
GGCGGCTAAAGCCGCTGAAGGGCTGCCCGACATTGCCACTCTACCACAAA
GCTCCTTTGGAGCCAGTTTCGAGCATACCGGGTTCCCCGGTACGATTGCG
ATTCGGGATGAGATTCTTAACGGCTTTTGGGGCGACATAACAAAGAGCGT
AGTTCGGTCAGGGGTGAAAAAACTGCTGTTCGTGAACGGCCATGGGGGTC
AGACCAGCAACGTCCAAATCATCATTCGCAATGCTAGATTCGAGCATAAC
GTGTTAGCCGTCAGTTTCAATGTTCAAGCAATGCTGGCTAAAGCGTACGG
TGAGCTTGTTGACACGAATTTGAGTTCAGATGAAGTACTAAAGGGCATTC
ATGGGGGTTTGATTGAAACGTCTGTTATGCTGCATTTGCATCCCGAATTA
GTTCGGGTTGATCTTCTACGCGACTTCAGGCCAAGACCGAAACTTCACTC
TCACCTGGAACCGTACGGAACTGTTGTGTCTTATGGGTGGTATATGGAGG
ACCTTTGCAGGGATGGAGCGGTTGGGAATGCCGAAGCGTCAACCCTTGAG
CTCGGTTCACAAATCTTTAAACGAAGCGTGATGGAGCTAAGAGCGGTTAT
CGAAGACATGATAAAAAGTGATCTGAAGGAACTTCTGGGGGTGAAAAGCA
ATAGTTAA
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