Gcaud9601.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9601.t1
Unique NameGcaud9601.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length538
Homology
BLAST of Gcaud9601.t1 vs. uniprot
Match: A0A2V3IC45_9FLOR (Uncharacterized protein n=3 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC45_9FLOR)

HSP 1 Score: 346 bits (887), Expect = 2.310e-110
Identity = 197/451 (43.68%), Postives = 268/451 (59.42%), Query Frame = 0
Query:   84 LCVSAALAQKQNVVLVPDLSSNLSAMNIPTANISYPTFENDTNFNA-PESSTATPAFSVPALSAFHSFTTNELVNDYIAGLLSLVILSQIRNILSGIIYATPGIHHRGYSSYIIFSRLVSFRHPYRLITRREPYKKSGSTSPITMTPGVNFRLALLPIFALAVLYAGELGTIISGSQTRKNYSAKQSFDPVLSLVSDTPPPRKQQK--ENCDDFFVPTRGIQQRGKVLKCVEMSTHKWDVFKFSGLLIFAVNINPTWTTVQIFDQRGEFSAVEVSTFIVSVSGNRFQTIPIRFDLMTSTRRKQFLNGFLNGVRRRLGYDPLHPDLILWSVSDTGPQTG--------HLHGWNDSIGNITDAVVSELRQMDLTLNSSGEPWVFESPNQIKQMNPWIAVVTSPRIAHSWLLILAVVVTAANVIVNTYATHFDEVAYTAMRETIGDVCTLGPLA 523
            LC+S  L + + VV V  L    +   +P A+I +P   + T+       S+ TP FS  +LS F+SFTTN+L ND+  G+LSL++++Q+  I  G+IY  PG+H+RGYSSY++FSRL SFR+ +RL TRREP+ +           G + +  L P+ ALA+LY  EL TII+G+  R  + A+Q+FDP +S+V     PR+      +CDDFFV TRG+ + GKVLKCV     +   +K +  L  +V      T   I  + G +  +++STF++S  G RF+T+P R DL +    K  LNG LNGVRRRLGY  L     LW+  +    +         H H WNDS   I  A ++ELR MDL LNS+G PWVF  P   +QMNP IAVV   RIAH WLLI  V+V     +VNT  THFDEVA+ AM+E +G+ C LGPLA
Sbjct:   13 LCLSPFLREYEQVVPVSTLLLMGNLSELPIASIQHPVPFDPTSLQTFLNVSSNTPPFSASSLSLFNSFTTNDLANDFTGGILSLIVVAQLHRIFKGLIYFFPGVHNRGYSSYVVFSRLASFRYLFRLFTRREPFGERSQHREEEEF-GYSLKTILFPLTALALLYIAELVTIIAGTTMRSQHFAEQNFDPKISVVRGAQRPRRVDNLWSDCDDFFVSTRGLFESGKVLKCVSEVRDQLTPYKANIKL--SVRYYSGDTIFDIHSRNGSYKTIDLSTFLLSKGGVRFRTMPFRPDLSSEPELKHLLNGILNGVRRRLGYSELDTRHTLWAGKELEGASEVAEEIIFYHFHDWNDSAETIAAAFMAELRYMDLVLNSTGLPWVFTRPYTFEQMNPAIAVVKQYRIAHGWLLIALVLVILIQFVVNTRVTHFDEVAFLAMKELMGEDCVLGPLA 460          
BLAST of Gcaud9601.t1 vs. uniprot
Match: A0A2V3ISJ2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISJ2_9FLOR)

HSP 1 Score: 264 bits (675), Expect = 4.540e-76
Identity = 188/548 (34.31%), Postives = 281/548 (51.28%), Query Frame = 0
Query:    1 MQSECSGVRSCVGTRTSRNASSDELLVFLATPNEPVLTCVCAPLTFIRCSSTNDCSDPDEVCASVTSNIRNESNLAATV-ILPPLCVSAALAQKQNVVLVPDL--SSNLSAMNIPTANISYPTFE---NDTNFNAPESSTATPAFSVPALSAFHSFTTNELVNDYIAGLLSLVILSQIRNILSGIIYATPGIHHRGYSSYIIFSRLVSFRHPYRLITRREPYKKSGSTSPITMTPGV----NFRLALLPIFALAVLYAGELGTIISGSQTRKNYSAKQSFDPVLSLVS----DTPPPRKQQ--KENCDDFFVPTRGIQQRGKVLKCVEMSTHKWDVFKFSGLLIFAVNINPTWTTVQIFDQRGEFSAVEVSTFIVSVSGNRFQTIPIRFDLMTSTRRKQFLNGFLNGVRRRLGYDPLHPDLILWSVSDTGPQTG--------HLHGWNDSIGNITDAVVSELRQMDLTLNSSGEPWVFESPNQIKQMNPWIAVVTSPR--IAHSWLLILAVVVTAANVIVNTYATHFDEVAYTAMRETIGDVCTLGPL 522
            +  +C G RSC G  + RN +     V  +        CVCAP     C S  + S    +C   +        L  +   L P+C++            P L  S  +S  +   + + Y   E   N T+ N  E      AF+VP++S F+SFTT++L N++I+G+ SL+IL  I +++ G++YA PGI    Y++YIIFSRL   R+ +RL++ RE     G  S I   P      N+R   +PI A+ VLY GE+G II+GS+ R  ++++ +FDP +SL +     T  PR +     NCDDFFVP RG+Q+RGKVLKCVE +++      +   +   V         Q+     E + +E+ST +  + G   +T+P R DLM     +  LN  +NGVRRRL YD +     +WS  ++             H H    ++     A+ +ELR  DL LNSSG PW F +    +Q    + + TS R  ++H  L+I  VV+  A++ +N+  T+FDEVAY AM+E IG+ C LGPL
Sbjct:  177 LHKDCRGSRSCRGL-SKRNETVTGCEVASSA-------CVCAPSRIKTCWSVGNNSRV--ICGKFSGEECQTIALDGSQGTLQPICLTNN----------PKLNRSKRISVFHGERSFVPYVGIEQKRNPTSKNRKEEPNGN-AFTVPSVSRFNSFTTDDLTNNFISGIASLLILVHITHLIRGLMYAFPGIRKSRYNTYIIFSRLSRMRYLFRLLSARE----EGVLSQIRNRPRKPVERNYRALFIPILAVIVLYTGEIGAIIAGSEVRSKFTSENNFDPRISLETTRSTSTLRPRLEDDVNPNCDDFFVPQRGLQRRGKVLKCVEENSNPMCE-PYEHTIQLNVRFGSGRMAFQVHGAGEECAELELSTVVRGIHGIDGRTMPFRPDLMGEVETRDVLNRIMNGVRRRLEYDEIDVKSDVWSFRESNGANDQIVDIEMYHKHEIRKTVNETKTALKAELRSADLVLNSSGAPWTFYAAYDFRQQADMV-MATSKRSYVSHGALVIAVVVIYVAHIFLNSLLTYFDEVAYIAMKELIGEDCVLGPL 697          
BLAST of Gcaud9601.t1 vs. uniprot
Match: A0A2V3IC97_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC97_9FLOR)

HSP 1 Score: 221 bits (564), Expect = 9.770e-65
Identity = 122/273 (44.69%), Postives = 158/273 (57.88%), Query Frame = 0
Query:  261 RKNYSAKQSFDPVLSLVSDTPPPRKQQK--ENCDDFFVPTRGIQQRGKVLKCVEMSTHKWDVFKFSGLLIFAVNINPTWTTVQIFDQRGEFSAVEVSTFIVSVSGNRFQTIPIRFDLMTSTRRKQFLNGFLNGVRRRLGYDPLHPDLILWSVSDTGPQTG--------HLHGWNDSIGNITDAVVSELRQMDLTLNSSGEPWVFESPNQIKQMNPWIAVVTSPRIAHSWLLILAVVVTAANVIVNTYATHFDEVAYTAMRETIGDVCTLGPLA 523
            R  + A+Q+FDP +S+V     PR+      +CDDFFV TRG+ + GKVLKCV     +   +K +  L  +V      T   I  + G +  +++STF++S  G RF+T+P R DL +    K  LNG LNGVRRRLGY  L     LW+  +    +         H H WNDS   I  A ++ELR MDL LNS+G PWVF  P   +QMNP IAVV   RIAH WLLI  V+V     +VNT  THFDEVA+ AM+E +G+ C LGPLA
Sbjct:    2 RSQHFAEQNFDPKISVVRGAQRPRRVDNLWSDCDDFFVSTRGLFESGKVLKCVSEVRDQLTPYKANIKL--SVRYYSGDTIFDIHSRNGSYKTIDLSTFLLSKGGVRFRTMPFRPDLSSEPELKHLLNGILNGVRRRLGYSELDTRHTLWAGKELEGASEVAEEIIFYHFHDWNDSAETIATAFMAELRYMDLVLNSTGLPWVFTRPYTFEQMNPAIAVVKQYRIAHGWLLIALVLVILIQFVVNTRVTHFDEVAFLAMKELMGEDCVLGPLA 272          
BLAST of Gcaud9601.t1 vs. uniprot
Match: A0A2V3IN15_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN15_9FLOR)

HSP 1 Score: 128 bits (322), Expect = 6.380e-30
Identity = 93/284 (32.75%), Postives = 139/284 (48.94%), Query Frame = 0
Query:  139 FSVPALSAFHSFTTNELVNDYIAGLLSLVILSQIRNILSGIIYATPGIHHRGYSSYIIFSRLVSFRHPYRLITRREP---YKKSGSTSPITMTPGV--NFRLALLPIFALAVLYAGELGTIISGSQTRKNYSAKQSFDPVLSLVSDTPPPRKQQKENCDDFFVPTRGIQQRGKVLKCVEMSTHK------WDVFKFSGLLIFAVNINPTWTTVQIFDQRGEFSAVEVSTFIVSVSGNRFQTIPIRFDLMTSTRRKQFLNGFLNGVRRRLGYDPLHPDLILWSVS 411
            FSV  +S F+ F+T+E++N YI G + LVIL ++ NI   ++Y T  +  R  + Y IF RL   RH   L+T RE    Y    + + I     +  NF +  +P  A  +L + E  +I +G+ T    +A  +FDP+L+L   T   R  Q   CDDFFVP+RG++Q  KVLKC+  S+        W+  + S  L   +N N     VQ  +     + V +S  I S+     Q    R+D+  +   + F NG +NG    L    L PD  +W  S
Sbjct:    6 FSVEPVSTFNRFSTDEMINAYIGGAIVLVILVELSNIFRAVLYGTRALDKRAINRYSIFERLADMRHLSTLLTGRESPAHYHTDRAPNIIQQNAPISRNFWVLCVPTLAAVLLLSAEFASIYAGTTTPSPITANTNFDPLLAL--STTARRTSQGNGCDDFFVPSRGVRQAAKVLKCITNSSVPRNPRITWEEARIS--LKSTINSNTHTMLVQTGEDM--HTIVRISIEIRSIGQGTQQMGVFRWDIDYNHTLEVF-NGIINGTLEVLD---LTPDSNVWHSS 279          
BLAST of Gcaud9601.t1 vs. uniprot
Match: A0A2V3IS94_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS94_9FLOR)

HSP 1 Score: 116 bits (291), Expect = 2.520e-24
Identity = 106/445 (23.82%), Postives = 186/445 (41.80%), Query Frame = 0
Query:  139 FSVPALSAFHSFTTNELVNDYIAGLLSLVILSQIRNILSGIIYATPGIHHRGYSSYIIFSRLVSFRHPYRLITRREPYKKSGSTSPITMTPG--------------------------------VNFRLALLPIFALAVLYAGELGTIISGSQTRKNYSAKQSFDPVLSLVSDTPPPRKQQKENCDDFFVPTRGIQQRGKVLKCVEMSTHKWDVFKFSG------LLIFAVNINPTWTTVQIFDQRGEFSAVEVSTFIVSVSGNRFQTIPIRFDLMTSTRRKQFLNGFLNGVRRRLGYDPLHPDLILWSVSDTGPQTGHLHGWNDSIG-------NITDAVVSELRQMDLTLN-SSGEPWVFESPNQIKQMNPWIAVVTSPRIAHSWLLILAVVVTAANVIVNTYATHFDEVAYTAMRETIGDVCTLGPLADYKAHTDSFVPEHS 537
            F    +S F+S       N  ++G+L+ ++L ++ N+   ++Y    I+ R   +Y+++SR+ S R  +R +   E      +T P +  P                                 + +R  L P+     L A +L  I S S T ++     +F+ VLS  +   P  K    +C  +   TRG++Q G VL C++    +    +F G       L F  + +       + D     S V V   I  +SG      P+R DL +        NG    + +++  + L    +   + D    T     +N S          +++AV+ ELR + L +N +S   W+F     I +    IAVV+S R+A  W LI+ V +    +I N + + F+E+AY A+++  G+  ++GPLA  +     FV + S
Sbjct:    3 FQPRGVSVFNSAFETHFPNVLLSGVLAFLVLLELENVTDVLVYRHYSINKRSLDTYMLYSRISSIRSVFRTLGGVEWASNQVATVPKSSVPSHYRRHSGERPSSEAHRLPSTKDCTPRGVPCPQLRYRKLLFPLLIRFTLLALQLFAIYSSSTTTRDVPVTPNFNLVLSNNTKPLPSPKGNFPSCRSWIQSTRGVEQNGDVLLCIDSEESR----RFEGQPSQNTTLHFLFSPDENRFEFIVRDHLAMESRVFVKAKISFLSGENVGVAPLRPDLTSD-------NGTAEELVKKVMVNALRRQRVEIRMDDIRTFTDSNVTYNYSCSLDLCDRVKLSNAVLDELRTLKLDVNKTSTGVWLFNGTGYIFEDKKAIAVVSSNRVAQGWFLIIWVALLLTRLIANRWLSDFEELAYAALKKVHGERMSVGPLAVTEHRAPVFVRKFS 436          
The following BLAST results are available for this feature:
BLAST of Gcaud9601.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IC45_9FLOR2.310e-11043.68Uncharacterized protein n=3 Tax=Gracilariopsis cho... [more]
A0A2V3ISJ2_9FLOR4.540e-7634.31Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IC97_9FLOR9.770e-6544.69Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IN15_9FLOR6.380e-3032.75Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IS94_9FLOR2.520e-2423.82Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 256..478
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 479..498
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 499..537
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 235..255
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..234
NoneNo IPR availableTMHMMTMhelixcoord: 479..501
NoneNo IPR availableTMHMMTMhelixcoord: 235..257

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3030_length_4171_cov_4.878431contigNODE_3030_length_4171_cov_4.878431:1812..3425 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9601.t1Gcaud9601.t1Gracilaria caudata M_176_S67 malemRNANODE_3030_length_4171_cov_4.878431 1812..3425 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9601.t1 ID=Gcaud9601.t1|Name=Gcaud9601.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=538bp
MQSECSGVRSCVGTRTSRNASSDELLVFLATPNEPVLTCVCAPLTFIRCS
STNDCSDPDEVCASVTSNIRNESNLAATVILPPLCVSAALAQKQNVVLVP
DLSSNLSAMNIPTANISYPTFENDTNFNAPESSTATPAFSVPALSAFHSF
TTNELVNDYIAGLLSLVILSQIRNILSGIIYATPGIHHRGYSSYIIFSRL
VSFRHPYRLITRREPYKKSGSTSPITMTPGVNFRLALLPIFALAVLYAGE
LGTIISGSQTRKNYSAKQSFDPVLSLVSDTPPPRKQQKENCDDFFVPTRG
IQQRGKVLKCVEMSTHKWDVFKFSGLLIFAVNINPTWTTVQIFDQRGEFS
AVEVSTFIVSVSGNRFQTIPIRFDLMTSTRRKQFLNGFLNGVRRRLGYDP
LHPDLILWSVSDTGPQTGHLHGWNDSIGNITDAVVSELRQMDLTLNSSGE
PWVFESPNQIKQMNPWIAVVTSPRIAHSWLLILAVVVTAANVIVNTYATH
FDEVAYTAMRETIGDVCTLGPLADYKAHTDSFVPEHS*
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