Gcaud1966.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1966.t1
Unique NameGcaud1966.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length423
Homology
BLAST of Gcaud1966.t1 vs. uniprot
Match: A0A2V3IJA3_9FLOR (BRK domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJA3_9FLOR)

HSP 1 Score: 484 bits (1247), Expect = 2.120e-162
Identity = 280/424 (66.04%), Postives = 332/424 (78.30%), Query Frame = 0
Query:    2 PRNGDDKSS-VQLSPAQFFKDMKDMMQKKAEQSSRAQSAGSGVTKKSSSSMPGAHELPVVSNPLQQHASHASMQNMMRPAQRMLLAVAQSSAHAQAAMAASHPYGASQSSSLTAFDVDAATFQLAGTRIDEPQPTHGASNNHTASSTLEEEALVRSPSQELMASNMTLSESVSQGLDLHSTHLS-SDAANARKQRADDIDKVLNSAGMSVGLSNHCNVSATTTNQMFDASRFNNGKNSASVSRSFSFLFKNNAPFASRENSMDFRKGDLGG-KRDMSMDMIRRDMSMDLLCARRVGSQEPIDGELVRDMSVDFFGSSLRNANRDFSMEMQFPTDSSGAQSGAVFELGALTDDVVFGQPFHNLHAAAKSEHNGAADARDGRFSRSKIGMSQDDLMVHVLANQAHHQTYRRNVNGSIDDLRELKMP 422
            P++ DDKS  V LSP Q FKDMKD++QKKAEQ+SRAQ+    V KK + SMP  HE+PVVSNP  +  +HA++Q   +P QR+   V+QSSA        S  +   QSS+LTAFDVDAATFQLAGTRIDEP+ +   + +  A +TLE   +V S SQ+LM SNM+LSES+++G+D+H+   S  DA NARKQRADDIDKVLNSAG S  LS+HC +S +  NQMFD++R NNGKNSASVSRSFSFLFK+ APFASRENSMDFRK DLGG KR+MSMDMIRRD+SMDLL +RR+GSQE IDGELVRDMS+D FG+SLRN NRDFSM+MQFPTDS+ AQSGAV ELGA TDDV FG PFH L  + +++ N A + RD +F RSKIGMSQDDLMVHVLANQ  HQ YRRNVNGSI+DLRELKMP
Sbjct:  352 PKSNDDKSGPVHLSPTQLFKDMKDLLQKKAEQTSRAQNPDF-VPKKPAPSMPPQHEMPVVSNPEARLHTHAALQQTAQPDQRVHHPVSQSSAPL------SQQFSPPQSSALTAFDVDAATFQLAGTRIDEPEASP-ITTDTPALATLEVGLVVPSASQDLMPSNMSLSESLAEGIDIHALQFSMDDAKNARKQRADDIDKVLNSAGTSGALSHHCTLSPSFANQMFDSARLNNGKNSASVSRSFSFLFKSGAPFASRENSMDFRKCDLGGGKREMSMDMIRRDISMDLLFSRRIGSQERIDGELVRDMSIDCFGNSLRNTNRDFSMDMQFPTDSNPAQSGAVLELGAFTDDVAFGLPFHGLQQS-RADLNSANEGRDAKFPRSKIGMSQDDLMVHVLANQGAHQQYRRNVNGSIEDLRELKMP 766          
BLAST of Gcaud1966.t1 vs. uniprot
Match: S0F3X0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3X0_CHOCR)

HSP 1 Score: 113 bits (283), Expect = 1.850e-23
Identity = 97/261 (37.16%), Postives = 128/261 (49.04%), Query Frame = 0
Query:   97 AMAASHPYGASQS-SSLTAFDVDAATFQLAGTRIDEPQPT-----HGASNNHTASSTLEEEALVRSPSQELMASNMTLSESVSQGLD----------LHSTHLS----------SDAANARKQRADDIDKVLNSAGMSVGLSNHCNVSATTTNQMFDASRFNNGKNSASVSRSFSFLFKNNAPFASRENSMDFRKGDL-GGKRDMSMDMIRRDMSMDLLCARRVGSQEPIDGELVRDMSVDFFGSSLRNANRDFSMEMQFP 330
            AM   H + A  S S     DVDAAT+QLAGTR++  + +       A      S T +   ++R+ S ++   + TLS S S G D          L    L            D  +A+K RAD +D  LN    S         S     QMFDA +  NGK   S+S+SFSF+ K      SRE+SM+FRK  L GG RDMS+D ++RD+SM+L+   R  S + +  EL R         +L  ANRDFSMEMQFP
Sbjct:  345 AMPPLHQFAAHASHSQQNTIDVDAATYQLAGTRLEGEEVSAVAAASAAMRRQNQSPTYDNSNIMRTDSTDMDVGSTTLSFSGS-GTDSVALATGKEQLQQQQLRRPNQPENQDLEDGKDAKKVRADHVDNFLNGQPASF--------SFPANGQMFDAFQLPNGKIPPSISQSFSFIMKGGP---SRESSMEFRKNTLNGGNRDMSIDFLKRDLSMELVSQVRKSSGDQVSSELPRXXXXXXXXXALSQANRDFSMEMQFP 593          
The following BLAST results are available for this feature:
BLAST of Gcaud1966.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJA3_9FLOR2.120e-16266.04BRK domain-containing protein n=1 Tax=Gracilariops... [more]
S0F3X0_CHOCR1.850e-2337.16Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_297_length_31759_cov_4.165656contigNODE_297_length_31759_cov_4.165656:4712..5980 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1966.t1Gcaud1966.t1Gracilaria caudata M_176_S67 malemRNANODE_297_length_31759_cov_4.165656 4712..5980 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1966.t1 ID=Gcaud1966.t1|Name=Gcaud1966.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=423bp
MPRNGDDKSSVQLSPAQFFKDMKDMMQKKAEQSSRAQSAGSGVTKKSSSS
MPGAHELPVVSNPLQQHASHASMQNMMRPAQRMLLAVAQSSAHAQAAMAA
SHPYGASQSSSLTAFDVDAATFQLAGTRIDEPQPTHGASNNHTASSTLEE
EALVRSPSQELMASNMTLSESVSQGLDLHSTHLSSDAANARKQRADDIDK
VLNSAGMSVGLSNHCNVSATTTNQMFDASRFNNGKNSASVSRSFSFLFKN
NAPFASRENSMDFRKGDLGGKRDMSMDMIRRDMSMDLLCARRVGSQEPID
GELVRDMSVDFFGSSLRNANRDFSMEMQFPTDSSGAQSGAVFELGALTDD
VVFGQPFHNLHAAAKSEHNGAADARDGRFSRSKIGMSQDDLMVHVLANQA
HHQTYRRNVNGSIDDLRELKMP*
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