Gcaud1967.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1967.t1
Unique NameGcaud1967.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length270
Homology
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BLAST of Gcaud1967.t1 vs. uniprot
Match: A0A2V3IJ70_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ70_9FLOR)

HSP 1 Score: 352 bits (904), Expect = 5.530e-120
Identity = 182/265 (68.68%), Postives = 208/265 (78.49%), Query Frame = 0 
Query:    1 MESSRATNARATQAFILAAFLSAVGVALFVSLLNTIRDSPLSEGAAGIANSPWAMSALADYIVGASFAALYVYLRDGSSVLCLSNKLFAIVFPFIGNFALLWYVAYLIYRARDVTLGLLPYTTEGSAG-PLNMRSDGISRQSKVIGSVFFGLLMAFAAVCFWASSLESLREGYAVLKTVQWAAFLFIDNLTGILFTVVFVIVREGELNCVTTLWIISFVLFGNAPTCLYVIQMAQQALRRDVPFSRVLLSRKKLVSVHGAAAVDP 264
            MES+ A NARATQA+I AAFL+ VGVALF+SL+ TIR SPLSEG +GI  SPWA+SALADY VGA FAALYV+LRDG  V CLSNK+FA+VFPF+GNFALLWYVAYLI +A+DVT GLLP T E      ++MRS    +  K IG  FF LL+ FAAVCFWAS  +SL+EGY VLK V+WA F FIDNLTGILFTVVF+IVREGE+NC+T+LWI+  V FGN PTCLYVI +AQQA  RDV FSRVLLSR K VSVH      P
Sbjct:    1 MESTTAANARATQAYIFAAFLTTVGVALFMSLVQTIRKSPLSEGISGIGESPWALSALADYFVGACFAALYVFLRDGPPVFCLSNKVFAVVFPFVGNFALLWYVAYLIVKAKDVTRGLLPQTVETPGNVEIDMRSSSTQKHPKTIGVAFFALLLWFAAVCFWASQRQSLQEGYRVLKMVKWAGFTFIDNLTGILFTVVFIIVREGEVNCITSLWILGLVFFGNGPTCLYVIHVAQQAFSRDVSFSRVLLSRSKSVSVHSVLEDGP 265
[Close]
BLAST of Gcaud1967.t1 vs. uniprot
Match: A0A2V3J599_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J599_9FLOR)

HSP 1 Score: 162 bits (409), Expect = 4.020e-45
Identity = 91/258 (35.27%), Postives = 146/258 (56.59%), Query Frame = 0 
Query:    1 MESSRATNARATQAFILAAFLSAVGVALFVSLLNTIRDSPLSEGAAGIANSPWAMSALADYIVGASFAALYVYLRDGSSVLCLSNKLFAIVFPFIGNFALLWYVAYLIYRARDVTLGLLPYTTEGSAGPLNMRSDGISRQSKVIGSVFFGLLMAFAAVCFWASSLESLREGYAVLKTVQ--WAAFLFIDNLTGILFTVVFVIVREGELNCVTTLWIISFVLFGNAPTCLYVIQMAQQALRRDVPFSRVLLSRKKLVSV 256
            M+S+ AT+    + + +AA L     A+  +  +   ++ L      I+ S WA+    D   GA FA  Y+++R+G SV C+  KLFA ++PFI NFALLWYVAY+I   +D+   L+PY+T  + G + MR+    R ++++ S+   L      +   A   ES    +  L + Q  W  F + D+L G+LFT +++I REG  +  + LW ++ ++ GNA TC+YV  MA QA+  DVP + VLLS +K +++
Sbjct:    1 MDSTTATSPSLIKTYSIAALLFIASFAVLFAYTSAALETSLLNAPQDISQSGWAVVIFFDASFGAVFAVYYLFVRNGPSVACIPAKLFAFLWPFISNFALLWYVAYMILLHKDLRSALIPYSTAEANGQVPMRTQRNRRTAQIVASIASFLFFVIVVLDINAMRYESFSTAWTKLLSNQNKWITFTYADSLAGLLFTAIYIIEREGGPSPTSVLWAVALLVLGNAVTCVYVFLMALQAISEDVPITHVLLSSRKTIAM 258
The following BLAST results are available for this feature:
BLAST of Gcaud1967.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJ70_9FLOR5.530e-12068.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J599_9FLOR4.020e-4535.27Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009943Protein of unknown function DUF1475PFAMPF07343DUF1475coord: 35..249
e-value: 2.2E-5
score: 24.4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..52
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 231..269
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 86..109
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 110..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 201..211
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 166..176
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 75..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 212..230
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 177..200
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..165
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 210..230
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 178..200
NoneNo IPR availableTMHMMTMhelixcoord: 87..109
NoneNo IPR availableTMHMMTMhelixcoord: 143..165
NoneNo IPR availableTMHMMTMhelixcoord: 13..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_297_length_31759_cov_4.165656contigNODE_297_length_31759_cov_4.165656:6196..7005 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1967.t1Gcaud1967.t1Gracilaria caudata M_176_S67 malemRNANODE_297_length_31759_cov_4.165656 6196..7005 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1967.t1 ID=Gcaud1967.t1|Name=Gcaud1967.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=270bp
MESSRATNARATQAFILAAFLSAVGVALFVSLLNTIRDSPLSEGAAGIAN
SPWAMSALADYIVGASFAALYVYLRDGSSVLCLSNKLFAIVFPFIGNFAL
LWYVAYLIYRARDVTLGLLPYTTEGSAGPLNMRSDGISRQSKVIGSVFFG
LLMAFAAVCFWASSLESLREGYAVLKTVQWAAFLFIDNLTGILFTVVFVI
VREGELNCVTTLWIISFVLFGNAPTCLYVIQMAQQALRRDVPFSRVLLSR
KKLVSVHGAAAVDPEIADL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009943DUF1475