Gcaud1965.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1965.t1
Unique NameGcaud1965.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_297_length_31759_cov_4.165656contigNODE_297_length_31759_cov_4.165656:31..1485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX31485
PFAMsCys_Met_Meta_PP
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00056,RC00069,RC00420,RC02848,RC02866
KEGG koko:K01739
KEGG ReactionR00999,R01288,R02508,R03217,R03260,R04944,R04945,R04946
KEGG Pathwayko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230
KEGG ModuleM00017
Evalue1.34e-178
EggNOG OGsCOG0626@1|root,KOG0053@2759|Eukaryota
EC2.5.1.48
Descriptioncystathionine gamma-synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1965Gcaud1965Gracilaria caudata M_176_S67 malegeneNODE_297_length_31759_cov_4.165656 31..1485 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1965.t1.stop1Gcaud1965.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_297_length_31759_cov_4.165656 31..33 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1965.t1.CDS1Gcaud1965.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_297_length_31759_cov_4.165656 31..1485 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1965.t1.exon1Gcaud1965.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_297_length_31759_cov_4.165656 31..1485 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1965.t1.start1Gcaud1965.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_297_length_31759_cov_4.165656 1483..1485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1965.t1Gcaud1965.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_297_length_31759_cov_4.165656 31..1485 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1965.t1 ID=Gcaud1965.t1|Name=Gcaud1965.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=485bp
MPPPPRRVHVAPARFRATLSESNARTAASSSSSSSSAAQDESATVASYVS
DPPAPHPLDHIDNMFDDADPFRPRRLVVANGREQTRSVHGGERLRGGKKT
KALLDAVQTPIVQSATFTFRSTRDCIDYNRGAYESYEYGRYGNPTTRSVE
EKIMSLEHAEDCLLSSSGMNAVTTMLLALVPQNGHVVVTTDCYRRTRQFV
DTVLPKMGISSTVLDPADMHALRHVLSSRGAQLYFSESPTNPLIRVVDVP
EIARVCRAHGTISVFDTTFATPINLRPTELGADLVLHSGTKYLAGHHDVL
CGALAGRADLIAQVRKLHGVLGGVIDPHAAFLVNRGLKTLGVRMEAHNRN
ASAIARALSTHEKVRTVHFPTLASHADYGTASRLFEKGFGGVLSFELAGD
GDAWSAATFEAAGRFVDALKLAYIGPSMGGCETMVEQVCIMGYFDQPLSE
RKRLGINNGLVRLACGIEDVNDLVDDIEAALEAV*
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spliced messenger RNA

>Gcaud1965.t1 ID=Gcaud1965.t1|Name=Gcaud1965.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:31..1485- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCACCACCGCGTCGCGTGCACGTCGCGCCCGCGCGTTTCCGCGC
CACGCTCAGCGAGTCCAACGCGCGCACCGCCGCGTCGTCGTCGTCGTCAT
CGTCGTCGGCGGCGCAAGACGAGTCGGCCACGGTGGCGTCGTACGTGTCC
GACCCGCCCGCGCCGCACCCGCTCGACCACATTGACAACATGTTCGACGA
CGCCGACCCGTTCCGTCCGCGACGGCTGGTGGTGGCCAACGGGCGCGAGC
AGACGCGCTCCGTGCACGGCGGCGAGCGGCTGCGCGGCGGAAAGAAGACA
AAGGCGTTGCTGGACGCGGTGCAGACGCCCATCGTGCAATCGGCCACGTT
CACGTTCCGCTCCACGCGCGATTGCATCGACTACAACCGCGGCGCGTACG
AGTCGTACGAGTACGGGCGGTATGGAAACCCCACCACGCGCAGCGTGGAG
GAGAAGATCATGTCGCTGGAGCACGCGGAGGACTGCTTGCTGTCGTCCAG
CGGCATGAACGCGGTGACGACCATGTTGCTGGCGCTGGTGCCGCAGAACG
GGCACGTGGTGGTCACCACCGACTGCTACCGACGCACGCGGCAGTTTGTG
GACACGGTGCTGCCCAAGATGGGCATCAGCAGCACGGTGCTGGACCCCGC
CGACATGCACGCGCTGCGGCACGTTTTGAGCTCGCGCGGCGCGCAGCTGT
ACTTCTCGGAGAGCCCGACCAACCCGCTGATCCGCGTGGTGGACGTGCCG
GAGATCGCGCGCGTGTGCCGCGCGCACGGCACCATCTCGGTGTTCGACAC
CACGTTTGCCACGCCCATCAACCTGCGCCCCACCGAGCTGGGCGCGGACC
TGGTGCTGCACTCGGGCACCAAGTACCTGGCGGGGCACCACGACGTGCTG
TGCGGCGCGCTGGCGGGGCGCGCCGATCTGATTGCGCAGGTGCGCAAGCT
GCACGGCGTGCTGGGCGGCGTGATCGACCCGCACGCGGCGTTCCTGGTGA
ACCGCGGACTCAAGACGCTGGGCGTGCGCATGGAGGCGCACAACCGCAAC
GCGAGCGCGATTGCGCGCGCGCTCAGCACGCACGAAAAGGTGCGCACGGT
GCACTTCCCCACGTTGGCGTCGCACGCGGACTACGGCACGGCGAGCCGGC
TGTTCGAGAAGGGCTTTGGCGGCGTGCTGAGCTTCGAGCTGGCCGGCGAC
GGCGACGCGTGGAGCGCGGCCACGTTCGAGGCGGCGGGGCGCTTCGTGGA
CGCGCTCAAGCTGGCGTACATCGGGCCGAGCATGGGCGGCTGCGAGACGA
TGGTGGAGCAGGTGTGCATCATGGGCTACTTTGACCAGCCGCTGAGCGAG
CGCAAGCGGCTGGGCATCAACAACGGGCTGGTGCGCCTGGCGTGCGGCAT
TGAGGACGTCAACGACCTGGTGGACGACATCGAGGCGGCGCTGGAGGCGG
TTTAA
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protein sequence of Gcaud1965.t1

>Gcaud1965.t1 ID=Gcaud1965.t1|Name=Gcaud1965.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=485bp
MPPPPRRVHVAPARFRATLSESNARTAASSSSSSSSAAQDESATVASYVS
DPPAPHPLDHIDNMFDDADPFRPRRLVVANGREQTRSVHGGERLRGGKKT
KALLDAVQTPIVQSATFTFRSTRDCIDYNRGAYESYEYGRYGNPTTRSVE
EKIMSLEHAEDCLLSSSGMNAVTTMLLALVPQNGHVVVTTDCYRRTRQFV
DTVLPKMGISSTVLDPADMHALRHVLSSRGAQLYFSESPTNPLIRVVDVP
EIARVCRAHGTISVFDTTFATPINLRPTELGADLVLHSGTKYLAGHHDVL
CGALAGRADLIAQVRKLHGVLGGVIDPHAAFLVNRGLKTLGVRMEAHNRN
ASAIARALSTHEKVRTVHFPTLASHADYGTASRLFEKGFGGVLSFELAGD
GDAWSAATFEAAGRFVDALKLAYIGPSMGGCETMVEQVCIMGYFDQPLSE
RKRLGINNGLVRLACGIEDVNDLVDDIEAALEAV*
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mRNA from alignment at NODE_297_length_31759_cov_4.165656:31..1485-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1965.t1 ID=Gcaud1965.t1|Name=Gcaud1965.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:31..1485- (Gracilaria caudata M_176_S67 male)
ATGCCGCCACCACCGCGTCGCGTGCACGTCGCGCCCGCGCGTTTCCGCGC
CACGCTCAGCGAGTCCAACGCGCGCACCGCCGCGTCGTCGTCGTCGTCAT
CGTCGTCGGCGGCGCAAGACGAGTCGGCCACGGTGGCGTCGTACGTGTCC
GACCCGCCCGCGCCGCACCCGCTCGACCACATTGACAACATGTTCGACGA
CGCCGACCCGTTCCGTCCGCGACGGCTGGTGGTGGCCAACGGGCGCGAGC
AGACGCGCTCCGTGCACGGCGGCGAGCGGCTGCGCGGCGGAAAGAAGACA
AAGGCGTTGCTGGACGCGGTGCAGACGCCCATCGTGCAATCGGCCACGTT
CACGTTCCGCTCCACGCGCGATTGCATCGACTACAACCGCGGCGCGTACG
AGTCGTACGAGTACGGGCGGTATGGAAACCCCACCACGCGCAGCGTGGAG
GAGAAGATCATGTCGCTGGAGCACGCGGAGGACTGCTTGCTGTCGTCCAG
CGGCATGAACGCGGTGACGACCATGTTGCTGGCGCTGGTGCCGCAGAACG
GGCACGTGGTGGTCACCACCGACTGCTACCGACGCACGCGGCAGTTTGTG
GACACGGTGCTGCCCAAGATGGGCATCAGCAGCACGGTGCTGGACCCCGC
CGACATGCACGCGCTGCGGCACGTTTTGAGCTCGCGCGGCGCGCAGCTGT
ACTTCTCGGAGAGCCCGACCAACCCGCTGATCCGCGTGGTGGACGTGCCG
GAGATCGCGCGCGTGTGCCGCGCGCACGGCACCATCTCGGTGTTCGACAC
CACGTTTGCCACGCCCATCAACCTGCGCCCCACCGAGCTGGGCGCGGACC
TGGTGCTGCACTCGGGCACCAAGTACCTGGCGGGGCACCACGACGTGCTG
TGCGGCGCGCTGGCGGGGCGCGCCGATCTGATTGCGCAGGTGCGCAAGCT
GCACGGCGTGCTGGGCGGCGTGATCGACCCGCACGCGGCGTTCCTGGTGA
ACCGCGGACTCAAGACGCTGGGCGTGCGCATGGAGGCGCACAACCGCAAC
GCGAGCGCGATTGCGCGCGCGCTCAGCACGCACGAAAAGGTGCGCACGGT
GCACTTCCCCACGTTGGCGTCGCACGCGGACTACGGCACGGCGAGCCGGC
TGTTCGAGAAGGGCTTTGGCGGCGTGCTGAGCTTCGAGCTGGCCGGCGAC
GGCGACGCGTGGAGCGCGGCCACGTTCGAGGCGGCGGGGCGCTTCGTGGA
CGCGCTCAAGCTGGCGTACATCGGGCCGAGCATGGGCGGCTGCGAGACGA
TGGTGGAGCAGGTGTGCATCATGGGCTACTTTGACCAGCCGCTGAGCGAG
CGCAAGCGGCTGGGCATCAACAACGGGCTGGTGCGCCTGGCGTGCGGCAT
TGAGGACGTCAACGACCTGGTGGACGACATCGAGGCGGCGCTGGAGGCGG
TTTAA
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Coding sequence (CDS) from alignment at NODE_297_length_31759_cov_4.165656:31..1485-

>Gcaud1965.t1 ID=Gcaud1965.t1|Name=Gcaud1965.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1455bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:31..1485- (Gracilaria caudata M_176_S67 male)
ATGCCGCCACCACCGCGTCGCGTGCACGTCGCGCCCGCGCGTTTCCGCGC
CACGCTCAGCGAGTCCAACGCGCGCACCGCCGCGTCGTCGTCGTCGTCAT
CGTCGTCGGCGGCGCAAGACGAGTCGGCCACGGTGGCGTCGTACGTGTCC
GACCCGCCCGCGCCGCACCCGCTCGACCACATTGACAACATGTTCGACGA
CGCCGACCCGTTCCGTCCGCGACGGCTGGTGGTGGCCAACGGGCGCGAGC
AGACGCGCTCCGTGCACGGCGGCGAGCGGCTGCGCGGCGGAAAGAAGACA
AAGGCGTTGCTGGACGCGGTGCAGACGCCCATCGTGCAATCGGCCACGTT
CACGTTCCGCTCCACGCGCGATTGCATCGACTACAACCGCGGCGCGTACG
AGTCGTACGAGTACGGGCGGTATGGAAACCCCACCACGCGCAGCGTGGAG
GAGAAGATCATGTCGCTGGAGCACGCGGAGGACTGCTTGCTGTCGTCCAG
CGGCATGAACGCGGTGACGACCATGTTGCTGGCGCTGGTGCCGCAGAACG
GGCACGTGGTGGTCACCACCGACTGCTACCGACGCACGCGGCAGTTTGTG
GACACGGTGCTGCCCAAGATGGGCATCAGCAGCACGGTGCTGGACCCCGC
CGACATGCACGCGCTGCGGCACGTTTTGAGCTCGCGCGGCGCGCAGCTGT
ACTTCTCGGAGAGCCCGACCAACCCGCTGATCCGCGTGGTGGACGTGCCG
GAGATCGCGCGCGTGTGCCGCGCGCACGGCACCATCTCGGTGTTCGACAC
CACGTTTGCCACGCCCATCAACCTGCGCCCCACCGAGCTGGGCGCGGACC
TGGTGCTGCACTCGGGCACCAAGTACCTGGCGGGGCACCACGACGTGCTG
TGCGGCGCGCTGGCGGGGCGCGCCGATCTGATTGCGCAGGTGCGCAAGCT
GCACGGCGTGCTGGGCGGCGTGATCGACCCGCACGCGGCGTTCCTGGTGA
ACCGCGGACTCAAGACGCTGGGCGTGCGCATGGAGGCGCACAACCGCAAC
GCGAGCGCGATTGCGCGCGCGCTCAGCACGCACGAAAAGGTGCGCACGGT
GCACTTCCCCACGTTGGCGTCGCACGCGGACTACGGCACGGCGAGCCGGC
TGTTCGAGAAGGGCTTTGGCGGCGTGCTGAGCTTCGAGCTGGCCGGCGAC
GGCGACGCGTGGAGCGCGGCCACGTTCGAGGCGGCGGGGCGCTTCGTGGA
CGCGCTCAAGCTGGCGTACATCGGGCCGAGCATGGGCGGCTGCGAGACGA
TGGTGGAGCAGGTGTGCATCATGGGCTACTTTGACCAGCCGCTGAGCGAG
CGCAAGCGGCTGGGCATCAACAACGGGCTGGTGCGCCTGGCGTGCGGCAT
TGAGGACGTCAACGACCTGGTGGACGACATCGAGGCGGCGCTGGAGGCGG
TTTAA
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