Gcaud1973.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1973.t1
Unique Name	Gcaud1973.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	452

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_297_length_31759_cov_4.165656	contig	NODE_297_length_31759_cov_4.165656:24558..25913 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706154.1
Preferred name	VPS4B
PFAMs	AAA,MIT,Vps4_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12196
KEGG Pathway	ko04144,ko04217,map04144,map04217
KEGG Module	M00412
GOs	GO:0000070,GO:0000075,GO:0000166,GO:0000278,GO:0000280,GO:0000323,GO:0000819,GO:0000910,GO:0000916,GO:0000920,GO:0000922,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002790,GO:0003002,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006622,GO:0006623,GO:0006629,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006869,GO:0006886,GO:0006900,GO:0006906,GO:0006914,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007032,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007163,GO:0007275,GO:0007346,GO:0007389,GO:0007399,GO:0007423,GO:0007610,GO:0007638,GO:0008022,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008202,GO:0008333,GO:0008593,GO:0009056,GO:0009057,GO:0009306,GO:0009405,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009838,GO:0009887,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010256,GO:0010389,GO:0010564,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010824,GO:0010825,GO:0010876,GO:0010941,GO:0010948,GO:0010971,GO:0010972,GO:0012505,GO:0015031,GO:0015630,GO:0015672,GO:0015833,GO:0015850,GO:0015918,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016125,GO:0016192,GO:0016197,GO:0016236,GO:0016322,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017016,GO:0017048,GO:0017076,GO:0017111,GO:0017157,GO:0019058,GO:0019068,GO:0019076,GO:0019538,GO:0019899,GO:0019904,GO:0019941,GO:0021700,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030001,GO:0030029,GO:0030036,GO:0030154,GO:0030163,GO:0030182,GO:0030301,GO:0030447,GO:0030448,GO:0030496,GO:0030554,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031267,GO:0031410,GO:0031468,GO:0031982,GO:0032365,GO:0032366,GO:0032367,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032506,GO:0032507,GO:0032509,GO:0032510,GO:0032511,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032886,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033993,GO:0034058,GO:0034067,GO:0034613,GO:0035088,GO:0035418,GO:0035639,GO:0035890,GO:0035891,GO:0036094,GO:0036213,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040017,GO:0042051,GO:0042058,GO:0042221,GO:0042461,GO:0042462,GO:0042551,GO:0042623,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043624,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044837,GO:0044878,GO:0045053,GO:0045184,GO:0045185,GO:0045197,GO:0045324,GO:0045463,GO:0045465,GO:0045470,GO:0045742,GO:0045746,GO:0045786,GO:0045787,GO:0045920,GO:0045921,GO:0045926,GO:0045930,GO:0045931,GO:0046530,GO:0046599,GO:0046601,GO:0046605,GO:0046607,GO:0046755,GO:0046903,GO:0046907,GO:0046983,GO:0048284,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051235,GO:0051259,GO:0051260,GO:0051261,GO:0051276,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051493,GO:0051495,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051651,GO:0051656,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051782,GO:0051783,GO:0052126,GO:0052192,GO:0060236,GO:0060341,GO:0060548,GO:0060627,GO:0061024,GO:0061025,GO:0061245,GO:0061462,GO:0061640,GO:0061738,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070676,GO:0070727,GO:0070887,GO:0070925,GO:0071241,GO:0071248,GO:0071285,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072319,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0090068,GO:0090169,GO:0090174,GO:0090224,GO:0090543,GO:0090596,GO:0090611,GO:0097159,GO:0097352,GO:0097367,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:1901184,GO:1901186,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901615,GO:1901673,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902115,GO:1902117,GO:1902186,GO:1902188,GO:1902494,GO:1902749,GO:1902750,GO:1902751,GO:1903047,GO:1903076,GO:1903530,GO:1903531,GO:1903532,GO:1903539,GO:1903541,GO:1903542,GO:1903543,GO:1903722,GO:1903724,GO:1903772,GO:1903774,GO:1903827,GO:1903900,GO:1903902,GO:1904375,GO:1904896,GO:1904903,GO:1904949,GO:1905475,GO:1990621,GO:1990778
Evalue	3.1e-168
EggNOG OGs	KOG0739@1\|root,KOG0739@2759\|Eukaryota
Description	positive regulation of centriole elongation
COG category	O
BRITE	ko00000,ko00001,ko00002,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1973	Gcaud1973	Gracilaria caudata M_176_S67 male	gene	NODE_297_length_31759_cov_4.165656 24558..25913 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1973.t1.stop1	Gcaud1973.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_297_length_31759_cov_4.165656 24558..24560 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1973.t1.CDS1	Gcaud1973.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 24558..25913 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1973.t1.exon1	Gcaud1973.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 24558..25913 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1973.t1.start1	Gcaud1973.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_297_length_31759_cov_4.165656 25911..25913 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1973.t1	Gcaud1973.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_297_length_31759_cov_4.165656 24558..25913 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_297_length_31759_cov_4.165656:24558..25913-
coding sequence from alignment at NODE_297_length_31759_cov_4.165656:24558..25913-

mRNA sequence

>Gcaud1973.t1 ID=Gcaud1973.t1|Name=Gcaud1973.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=452bp
MTDTSTFINQGVLHAEKAIQYDKLACKDSNPEHFENAKNSYVRAIEHYYV
ALKYEKNERTKHTLRDKIETYMSRAETMKEWLTKYEAQQKEAADNPSSDQ
GAADTGGTAAPSKKKGDKDDDNGEKRLRDRLGTAVLTEKPNVKWDDVAGL
EGAKEALREAVILPQMFPQMFTGKRRPWKGILLYGPPGTGKSYLAKAVAT
EADATFFSVSSSDLVSKWQGESEKLVKQLFSMARDAGKAIIFIDEIDALV
SSRNDNESESSRRIKTEFLVQMDGVGNSTDGVLLLAATNIPWALDEAMLR
RMERRIYIPLPDTRARAKMFKLHLGNTPHSLQQSDFMDLAQQSDGYSGSD
IAILCRDALMQPVRTLQNASFFKKVTVNEKGQSKTKYTPCSPGDPEKIEM
SLMKVKAEELLIPPVKRIDFEKALSSTKPSVGRDNLAKHDKFTKEKGQSG
V*

spliced messenger RNA

>Gcaud1973.t1 ID=Gcaud1973.t1|Name=Gcaud1973.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:24558..25913- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATACCAGTACCTTCATCAACCAGGGCGTGCTTCATGCCGAGAA
GGCCATTCAGTATGACAAGCTCGCATGCAAAGATTCCAACCCCGAGCACT
TCGAGAACGCCAAGAACAGTTATGTACGCGCCATCGAGCACTATTACGTC
GCGCTTAAGTACGAGAAGAATGAACGTACGAAGCACACCCTTCGAGACAA
GATAGAGACCTACATGAGCCGCGCAGAGACCATGAAGGAATGGCTCACAA
AGTACGAGGCCCAACAAAAGGAGGCCGCTGACAATCCCAGTTCCGATCAA
GGCGCCGCTGATACGGGCGGAACTGCTGCGCCTTCCAAGAAGAAGGGGGA
TAAGGATGATGACAACGGTGAAAAGCGCTTAAGAGATCGTCTGGGAACTG
CCGTTCTGACTGAGAAGCCCAACGTCAAATGGGATGACGTCGCCGGTCTG
GAAGGTGCGAAGGAAGCATTGAGAGAAGCTGTTATTTTACCTCAAATGTT
CCCGCAGATGTTCACGGGAAAACGACGACCATGGAAAGGAATTCTGCTCT
ATGGCCCGCCCGGCACGGGCAAGAGTTATCTTGCGAAGGCGGTCGCTACG
GAGGCGGACGCCACTTTCTTCTCGGTATCGTCCAGCGATTTGGTGTCCAA
ATGGCAGGGAGAGAGTGAAAAGCTCGTCAAACAACTGTTCTCAATGGCTC
GAGATGCGGGAAAAGCCATCATTTTCATCGATGAGATTGATGCGTTGGTG
TCATCTAGGAATGACAATGAGTCTGAAAGTTCGCGTAGAATAAAGACCGA
GTTCCTAGTCCAGATGGACGGAGTTGGAAATTCTACGGATGGCGTTTTAT
TACTGGCTGCTACGAATATTCCTTGGGCATTGGATGAAGCTATGTTACGA
AGAATGGAACGTCGTATATACATCCCGCTTCCTGATACAAGAGCAAGAGC
GAAGATGTTTAAATTGCATCTGGGAAATACTCCTCACAGTCTTCAACAAA
GTGATTTCATGGACTTGGCGCAACAGAGTGATGGTTATTCTGGATCCGAT
ATTGCTATCTTGTGCCGTGACGCACTCATGCAACCTGTGCGTACATTACA
GAATGCGAGCTTTTTCAAGAAGGTCACTGTGAATGAAAAGGGCCAGAGCA
AGACAAAGTACACGCCGTGCTCACCGGGCGACCCAGAGAAGATTGAGATG
AGCTTGATGAAGGTTAAAGCGGAAGAGCTTTTGATTCCTCCTGTGAAACG
AATCGATTTTGAAAAGGCTCTCTCTAGTACTAAACCGTCAGTGGGAAGGG
ATAACCTTGCAAAGCATGATAAGTTTACGAAAGAGAAGGGTCAAAGTGGC
GTCTGA

protein sequence of Gcaud1973.t1

>Gcaud1973.t1 ID=Gcaud1973.t1|Name=Gcaud1973.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=452bp
MTDTSTFINQGVLHAEKAIQYDKLACKDSNPEHFENAKNSYVRAIEHYYV
ALKYEKNERTKHTLRDKIETYMSRAETMKEWLTKYEAQQKEAADNPSSDQ
GAADTGGTAAPSKKKGDKDDDNGEKRLRDRLGTAVLTEKPNVKWDDVAGL
EGAKEALREAVILPQMFPQMFTGKRRPWKGILLYGPPGTGKSYLAKAVAT
EADATFFSVSSSDLVSKWQGESEKLVKQLFSMARDAGKAIIFIDEIDALV
SSRNDNESESSRRIKTEFLVQMDGVGNSTDGVLLLAATNIPWALDEAMLR
RMERRIYIPLPDTRARAKMFKLHLGNTPHSLQQSDFMDLAQQSDGYSGSD
IAILCRDALMQPVRTLQNASFFKKVTVNEKGQSKTKYTPCSPGDPEKIEM
SLMKVKAEELLIPPVKRIDFEKALSSTKPSVGRDNLAKHDKFTKEKGQSG
V*

mRNA from alignment at NODE_297_length_31759_cov_4.165656:24558..25913-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1973.t1 ID=Gcaud1973.t1|Name=Gcaud1973.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:24558..25913- (Gracilaria caudata M_176_S67 male)
ATGACCGATACCAGTACCTTCATCAACCAGGGCGTGCTTCATGCCGAGAA
GGCCATTCAGTATGACAAGCTCGCATGCAAAGATTCCAACCCCGAGCACT
TCGAGAACGCCAAGAACAGTTATGTACGCGCCATCGAGCACTATTACGTC
GCGCTTAAGTACGAGAAGAATGAACGTACGAAGCACACCCTTCGAGACAA
GATAGAGACCTACATGAGCCGCGCAGAGACCATGAAGGAATGGCTCACAA
AGTACGAGGCCCAACAAAAGGAGGCCGCTGACAATCCCAGTTCCGATCAA
GGCGCCGCTGATACGGGCGGAACTGCTGCGCCTTCCAAGAAGAAGGGGGA
TAAGGATGATGACAACGGTGAAAAGCGCTTAAGAGATCGTCTGGGAACTG
CCGTTCTGACTGAGAAGCCCAACGTCAAATGGGATGACGTCGCCGGTCTG
GAAGGTGCGAAGGAAGCATTGAGAGAAGCTGTTATTTTACCTCAAATGTT
CCCGCAGATGTTCACGGGAAAACGACGACCATGGAAAGGAATTCTGCTCT
ATGGCCCGCCCGGCACGGGCAAGAGTTATCTTGCGAAGGCGGTCGCTACG
GAGGCGGACGCCACTTTCTTCTCGGTATCGTCCAGCGATTTGGTGTCCAA
ATGGCAGGGAGAGAGTGAAAAGCTCGTCAAACAACTGTTCTCAATGGCTC
GAGATGCGGGAAAAGCCATCATTTTCATCGATGAGATTGATGCGTTGGTG
TCATCTAGGAATGACAATGAGTCTGAAAGTTCGCGTAGAATAAAGACCGA
GTTCCTAGTCCAGATGGACGGAGTTGGAAATTCTACGGATGGCGTTTTAT
TACTGGCTGCTACGAATATTCCTTGGGCATTGGATGAAGCTATGTTACGA
AGAATGGAACGTCGTATATACATCCCGCTTCCTGATACAAGAGCAAGAGC
GAAGATGTTTAAATTGCATCTGGGAAATACTCCTCACAGTCTTCAACAAA
GTGATTTCATGGACTTGGCGCAACAGAGTGATGGTTATTCTGGATCCGAT
ATTGCTATCTTGTGCCGTGACGCACTCATGCAACCTGTGCGTACATTACA
GAATGCGAGCTTTTTCAAGAAGGTCACTGTGAATGAAAAGGGCCAGAGCA
AGACAAAGTACACGCCGTGCTCACCGGGCGACCCAGAGAAGATTGAGATG
AGCTTGATGAAGGTTAAAGCGGAAGAGCTTTTGATTCCTCCTGTGAAACG
AATCGATTTTGAAAAGGCTCTCTCTAGTACTAAACCGTCAGTGGGAAGGG
ATAACCTTGCAAAGCATGATAAGTTTACGAAAGAGAAGGGTCAAAGTGGC
GTCTGA

Coding sequence (CDS) from alignment at NODE_297_length_31759_cov_4.165656:24558..25913-

>Gcaud1973.t1 ID=Gcaud1973.t1|Name=Gcaud1973.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1356bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:24558..25913- (Gracilaria caudata M_176_S67 male)
ATGACCGATACCAGTACCTTCATCAACCAGGGCGTGCTTCATGCCGAGAA
GGCCATTCAGTATGACAAGCTCGCATGCAAAGATTCCAACCCCGAGCACT
TCGAGAACGCCAAGAACAGTTATGTACGCGCCATCGAGCACTATTACGTC
GCGCTTAAGTACGAGAAGAATGAACGTACGAAGCACACCCTTCGAGACAA
GATAGAGACCTACATGAGCCGCGCAGAGACCATGAAGGAATGGCTCACAA
AGTACGAGGCCCAACAAAAGGAGGCCGCTGACAATCCCAGTTCCGATCAA
GGCGCCGCTGATACGGGCGGAACTGCTGCGCCTTCCAAGAAGAAGGGGGA
TAAGGATGATGACAACGGTGAAAAGCGCTTAAGAGATCGTCTGGGAACTG
CCGTTCTGACTGAGAAGCCCAACGTCAAATGGGATGACGTCGCCGGTCTG
GAAGGTGCGAAGGAAGCATTGAGAGAAGCTGTTATTTTACCTCAAATGTT
CCCGCAGATGTTCACGGGAAAACGACGACCATGGAAAGGAATTCTGCTCT
ATGGCCCGCCCGGCACGGGCAAGAGTTATCTTGCGAAGGCGGTCGCTACG
GAGGCGGACGCCACTTTCTTCTCGGTATCGTCCAGCGATTTGGTGTCCAA
ATGGCAGGGAGAGAGTGAAAAGCTCGTCAAACAACTGTTCTCAATGGCTC
GAGATGCGGGAAAAGCCATCATTTTCATCGATGAGATTGATGCGTTGGTG
TCATCTAGGAATGACAATGAGTCTGAAAGTTCGCGTAGAATAAAGACCGA
GTTCCTAGTCCAGATGGACGGAGTTGGAAATTCTACGGATGGCGTTTTAT
TACTGGCTGCTACGAATATTCCTTGGGCATTGGATGAAGCTATGTTACGA
AGAATGGAACGTCGTATATACATCCCGCTTCCTGATACAAGAGCAAGAGC
GAAGATGTTTAAATTGCATCTGGGAAATACTCCTCACAGTCTTCAACAAA
GTGATTTCATGGACTTGGCGCAACAGAGTGATGGTTATTCTGGATCCGAT
ATTGCTATCTTGTGCCGTGACGCACTCATGCAACCTGTGCGTACATTACA
GAATGCGAGCTTTTTCAAGAAGGTCACTGTGAATGAAAAGGGCCAGAGCA
AGACAAAGTACACGCCGTGCTCACCGGGCGACCCAGAGAAGATTGAGATG
AGCTTGATGAAGGTTAAAGCGGAAGAGCTTTTGATTCCTCCTGTGAAACG
AATCGATTTTGAAAAGGCTCTCTCTAGTACTAAACCGTCAGTGGGAAGGG
ATAACCTTGCAAAGCATGATAAGTTTACGAAAGAGAAGGGTCAAAGTGGC
GTCTGA