Gcaud2430.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2430.t1
Unique Name	Gcaud2430.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:29656..31251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LJM6
Preferred name	RUVBL1
PFAMs	TIP49
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04499
KEGG Pathway	ko04310,map04310
GOs	GO:0000003,GO:0000123,GO:0000166,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000491,GO:0000492,GO:0000785,GO:0000790,GO:0000812,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0002119,GO:0002164,GO:0002682,GO:0002831,GO:0003674,GO:0003678,GO:0003712,GO:0003713,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006417,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007507,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010755,GO:0010756,GO:0010941,GO:0010954,GO:0015630,GO:0016020,GO:0016043,GO:0016363,GO:0016462,GO:0016569,GO:0016570,GO:0016573,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030111,GO:0030162,GO:0030177,GO:0030554,GO:0031011,GO:0031055,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031497,GO:0031929,GO:0031974,GO:0031981,GO:0032101,GO:0032268,GO:0032270,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033202,GO:0034080,GO:0034248,GO:0034250,GO:0034399,GO:0034508,GO:0034622,GO:0034708,GO:0034724,GO:0034728,GO:0035060,GO:0035097,GO:0035267,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040008,GO:0042127,GO:0042623,GO:0042981,GO:0043044,GO:0043067,GO:0043138,GO:0043139,GO:0043140,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043531,GO:0043543,GO:0043900,GO:0043933,GO:0043967,GO:0043968,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044703,GO:0045088,GO:0045727,GO:0045862,GO:0045893,GO:0045935,GO:0046620,GO:0048232,GO:0048285,GO:0048507,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048638,GO:0048731,GO:0048856,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051225,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060303,GO:0060420,GO:0060828,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070209,GO:0070603,GO:0070613,GO:0070646,GO:0070647,GO:0070925,GO:0071103,GO:0071339,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0090263,GO:0090307,GO:0097159,GO:0097255,GO:0097346,GO:0097367,GO:0140014,GO:0140097,GO:0140110,GO:1900150,GO:1901265,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1902850,GO:1903047,GO:1903317,GO:1903319,GO:1903506,GO:1903508,GO:1904837,GO:1904949,GO:1990234,GO:1990904,GO:2000026,GO:2000072,GO:2000112,GO:2000269,GO:2001141
Evalue	1.38e-235
EggNOG OGs	COG1224@1\|root,KOG1942@2759\|Eukaryota
Description	ATP-dependent 5'-3' DNA helicase activity
COG category	K
BRITE	ko00000,ko00001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2430	Gcaud2430	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 29656..31251 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2430.t1.start1	Gcaud2430.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 29656..29658 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2430.t1.CDS1	Gcaud2430.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 29656..31251 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2430.t1.exon1	Gcaud2430.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 29656..31251 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2430.t1.stop1	Gcaud2430.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 31249..31251 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2430.t1	Gcaud2430.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 29656..31251 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:29656..31251+
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:29656..31251+

mRNA sequence

>Gcaud2430.t1 ID=Gcaud2430.t1|Name=Gcaud2430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=532bp
MVGSAEPSAVPSAGSSQPTSEIKKESTPQAKDGPTKPDEKADQQMTDVVP
QASPQPFAPVSEPNKALEPSSTPSTMKIEDVRSTAKAQRIAAHSHVKGLG
LNQTGTAMQMGGGLVGQEQAREAAGIVVELIKTKKMAGRALLLAGGMGTG
KTALALAIAQELGTKIPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIK
ESKEVFEGEVIELTPEETENPLGGYGKTISQVIIGLKAGRGTKQLRLDPS
IYEALQKERVCIGDVIYIEANSGAVKRVGRSDVYATEFDLEAEEYVPLPK
GDVHKKKEVVQDVTLHDLDVANARPQGGRDIISMLNQMGKPKKTEITEKL
RAEINKIVSGYIDQGVAELVPGVLFIDEVHMLDLECFAFLNRALESNLAP
IVIFATNRGMTEVSGTDMRAPHGIPVDLLDRCLIIRTQPYSMEDIAVIIQ
IRAKVEGIVLKEDNVVAALVEVAARTSLRYATQILTPASILSSVKGQEHL
TAADVKEADGLFYDAKASARILRESASKYIS*

spliced messenger RNA

>Gcaud2430.t1 ID=Gcaud2430.t1|Name=Gcaud2430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:29656..31251+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGAAGTGCGGAGCCCTCGGCTGTTCCAAGTGCTGGATCGTCTCA
ACCTACCAGCGAGATTAAGAAAGAAAGTACCCCACAAGCCAAAGATGGAC
CCACGAAACCAGATGAAAAGGCTGATCAGCAGATGACCGATGTTGTTCCA
CAAGCGTCTCCGCAACCATTTGCACCGGTTTCAGAGCCCAACAAGGCCCT
TGAGCCATCAAGCACTCCGTCCACAATGAAAATCGAAGACGTGCGTTCTA
CGGCAAAAGCACAACGAATTGCAGCACATTCGCACGTGAAAGGCTTAGGT
TTGAACCAGACTGGAACAGCTATGCAGATGGGAGGAGGTCTTGTCGGACA
AGAACAAGCGAGAGAAGCAGCTGGTATTGTTGTTGAACTCATTAAGACCA
AGAAAATGGCAGGCAGGGCGCTTTTGCTCGCCGGTGGTATGGGTACTGGT
AAAACTGCCCTAGCTTTGGCTATTGCCCAGGAGCTCGGAACCAAGATTCC
ATTTTGTCCTATGGTGGGCTCAGAGGTGTATTCTAGTGAAGTGAAGAAAA
CTGAAGTGCTTATGGAAAACTTCAGAAGAGCAATTGGATTGCGAATCAAA
GAGAGTAAAGAAGTCTTTGAGGGAGAAGTGATTGAACTGACTCCGGAAGA
AACTGAAAATCCACTTGGTGGGTACGGGAAGACAATAAGCCAAGTAATTA
TTGGGCTGAAAGCCGGTCGCGGGACAAAACAGCTCAGGCTTGACCCTTCT
ATCTACGAAGCTTTACAAAAAGAACGAGTCTGCATTGGGGACGTCATCTA
CATTGAGGCTAATTCGGGCGCGGTAAAGCGTGTTGGAAGGAGCGACGTGT
ACGCAACAGAATTTGACCTAGAGGCCGAAGAGTACGTCCCGTTACCGAAA
GGGGATGTTCATAAGAAGAAAGAAGTTGTTCAGGATGTCACATTACACGA
CCTCGATGTTGCGAACGCTAGACCTCAAGGAGGTCGTGACATTATCAGTA
TGCTCAACCAAATGGGCAAACCGAAAAAGACCGAGATCACCGAAAAGCTA
CGCGCGGAAATCAACAAGATCGTCTCGGGCTATATTGATCAGGGAGTAGC
GGAACTTGTTCCAGGAGTGCTGTTCATTGATGAAGTTCATATGCTCGATT
TGGAATGCTTTGCTTTCTTGAATAGGGCTCTTGAATCTAATTTGGCCCCG
ATCGTCATTTTTGCAACAAACAGAGGGATGACAGAAGTTAGTGGCACAGA
TATGCGGGCACCTCACGGAATTCCTGTGGACCTCTTGGATCGATGCCTCA
TCATCAGAACTCAACCTTATTCAATGGAAGACATTGCGGTAATCATCCAG
ATTAGAGCTAAGGTGGAAGGTATCGTGTTAAAGGAGGACAACGTTGTCGC
AGCACTGGTTGAGGTTGCTGCTCGCACTTCGCTGCGATACGCAACACAGA
TATTGACCCCCGCGAGCATTCTGTCCAGTGTTAAAGGTCAAGAACATCTG
ACGGCTGCCGACGTTAAGGAGGCGGATGGATTGTTTTACGACGCCAAAGC
CTCCGCTCGAATATTGCGGGAAAGTGCTTCGAAATACATAAGTTGA

protein sequence of Gcaud2430.t1

>Gcaud2430.t1 ID=Gcaud2430.t1|Name=Gcaud2430.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=532bp
MVGSAEPSAVPSAGSSQPTSEIKKESTPQAKDGPTKPDEKADQQMTDVVP
QASPQPFAPVSEPNKALEPSSTPSTMKIEDVRSTAKAQRIAAHSHVKGLG
LNQTGTAMQMGGGLVGQEQAREAAGIVVELIKTKKMAGRALLLAGGMGTG
KTALALAIAQELGTKIPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIK
ESKEVFEGEVIELTPEETENPLGGYGKTISQVIIGLKAGRGTKQLRLDPS
IYEALQKERVCIGDVIYIEANSGAVKRVGRSDVYATEFDLEAEEYVPLPK
GDVHKKKEVVQDVTLHDLDVANARPQGGRDIISMLNQMGKPKKTEITEKL
RAEINKIVSGYIDQGVAELVPGVLFIDEVHMLDLECFAFLNRALESNLAP
IVIFATNRGMTEVSGTDMRAPHGIPVDLLDRCLIIRTQPYSMEDIAVIIQ
IRAKVEGIVLKEDNVVAALVEVAARTSLRYATQILTPASILSSVKGQEHL
TAADVKEADGLFYDAKASARILRESASKYIS*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:29656..31251+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2430.t1 ID=Gcaud2430.t1|Name=Gcaud2430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:29656..31251+ (Gracilaria caudata M_176_S67 male)
ATGGTGGGAAGTGCGGAGCCCTCGGCTGTTCCAAGTGCTGGATCGTCTCA
ACCTACCAGCGAGATTAAGAAAGAAAGTACCCCACAAGCCAAAGATGGAC
CCACGAAACCAGATGAAAAGGCTGATCAGCAGATGACCGATGTTGTTCCA
CAAGCGTCTCCGCAACCATTTGCACCGGTTTCAGAGCCCAACAAGGCCCT
TGAGCCATCAAGCACTCCGTCCACAATGAAAATCGAAGACGTGCGTTCTA
CGGCAAAAGCACAACGAATTGCAGCACATTCGCACGTGAAAGGCTTAGGT
TTGAACCAGACTGGAACAGCTATGCAGATGGGAGGAGGTCTTGTCGGACA
AGAACAAGCGAGAGAAGCAGCTGGTATTGTTGTTGAACTCATTAAGACCA
AGAAAATGGCAGGCAGGGCGCTTTTGCTCGCCGGTGGTATGGGTACTGGT
AAAACTGCCCTAGCTTTGGCTATTGCCCAGGAGCTCGGAACCAAGATTCC
ATTTTGTCCTATGGTGGGCTCAGAGGTGTATTCTAGTGAAGTGAAGAAAA
CTGAAGTGCTTATGGAAAACTTCAGAAGAGCAATTGGATTGCGAATCAAA
GAGAGTAAAGAAGTCTTTGAGGGAGAAGTGATTGAACTGACTCCGGAAGA
AACTGAAAATCCACTTGGTGGGTACGGGAAGACAATAAGCCAAGTAATTA
TTGGGCTGAAAGCCGGTCGCGGGACAAAACAGCTCAGGCTTGACCCTTCT
ATCTACGAAGCTTTACAAAAAGAACGAGTCTGCATTGGGGACGTCATCTA
CATTGAGGCTAATTCGGGCGCGGTAAAGCGTGTTGGAAGGAGCGACGTGT
ACGCAACAGAATTTGACCTAGAGGCCGAAGAGTACGTCCCGTTACCGAAA
GGGGATGTTCATAAGAAGAAAGAAGTTGTTCAGGATGTCACATTACACGA
CCTCGATGTTGCGAACGCTAGACCTCAAGGAGGTCGTGACATTATCAGTA
TGCTCAACCAAATGGGCAAACCGAAAAAGACCGAGATCACCGAAAAGCTA
CGCGCGGAAATCAACAAGATCGTCTCGGGCTATATTGATCAGGGAGTAGC
GGAACTTGTTCCAGGAGTGCTGTTCATTGATGAAGTTCATATGCTCGATT
TGGAATGCTTTGCTTTCTTGAATAGGGCTCTTGAATCTAATTTGGCCCCG
ATCGTCATTTTTGCAACAAACAGAGGGATGACAGAAGTTAGTGGCACAGA
TATGCGGGCACCTCACGGAATTCCTGTGGACCTCTTGGATCGATGCCTCA
TCATCAGAACTCAACCTTATTCAATGGAAGACATTGCGGTAATCATCCAG
ATTAGAGCTAAGGTGGAAGGTATCGTGTTAAAGGAGGACAACGTTGTCGC
AGCACTGGTTGAGGTTGCTGCTCGCACTTCGCTGCGATACGCAACACAGA
TATTGACCCCCGCGAGCATTCTGTCCAGTGTTAAAGGTCAAGAACATCTG
ACGGCTGCCGACGTTAAGGAGGCGGATGGATTGTTTTACGACGCCAAAGC
CTCCGCTCGAATATTGCGGGAAAGTGCTTCGAAATACATAAGTTGA

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:29656..31251+

>Gcaud2430.t1 ID=Gcaud2430.t1|Name=Gcaud2430.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1596bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:29656..31251+ (Gracilaria caudata M_176_S67 male)
ATGGTGGGAAGTGCGGAGCCCTCGGCTGTTCCAAGTGCTGGATCGTCTCA
ACCTACCAGCGAGATTAAGAAAGAAAGTACCCCACAAGCCAAAGATGGAC
CCACGAAACCAGATGAAAAGGCTGATCAGCAGATGACCGATGTTGTTCCA
CAAGCGTCTCCGCAACCATTTGCACCGGTTTCAGAGCCCAACAAGGCCCT
TGAGCCATCAAGCACTCCGTCCACAATGAAAATCGAAGACGTGCGTTCTA
CGGCAAAAGCACAACGAATTGCAGCACATTCGCACGTGAAAGGCTTAGGT
TTGAACCAGACTGGAACAGCTATGCAGATGGGAGGAGGTCTTGTCGGACA
AGAACAAGCGAGAGAAGCAGCTGGTATTGTTGTTGAACTCATTAAGACCA
AGAAAATGGCAGGCAGGGCGCTTTTGCTCGCCGGTGGTATGGGTACTGGT
AAAACTGCCCTAGCTTTGGCTATTGCCCAGGAGCTCGGAACCAAGATTCC
ATTTTGTCCTATGGTGGGCTCAGAGGTGTATTCTAGTGAAGTGAAGAAAA
CTGAAGTGCTTATGGAAAACTTCAGAAGAGCAATTGGATTGCGAATCAAA
GAGAGTAAAGAAGTCTTTGAGGGAGAAGTGATTGAACTGACTCCGGAAGA
AACTGAAAATCCACTTGGTGGGTACGGGAAGACAATAAGCCAAGTAATTA
TTGGGCTGAAAGCCGGTCGCGGGACAAAACAGCTCAGGCTTGACCCTTCT
ATCTACGAAGCTTTACAAAAAGAACGAGTCTGCATTGGGGACGTCATCTA
CATTGAGGCTAATTCGGGCGCGGTAAAGCGTGTTGGAAGGAGCGACGTGT
ACGCAACAGAATTTGACCTAGAGGCCGAAGAGTACGTCCCGTTACCGAAA
GGGGATGTTCATAAGAAGAAAGAAGTTGTTCAGGATGTCACATTACACGA
CCTCGATGTTGCGAACGCTAGACCTCAAGGAGGTCGTGACATTATCAGTA
TGCTCAACCAAATGGGCAAACCGAAAAAGACCGAGATCACCGAAAAGCTA
CGCGCGGAAATCAACAAGATCGTCTCGGGCTATATTGATCAGGGAGTAGC
GGAACTTGTTCCAGGAGTGCTGTTCATTGATGAAGTTCATATGCTCGATT
TGGAATGCTTTGCTTTCTTGAATAGGGCTCTTGAATCTAATTTGGCCCCG
ATCGTCATTTTTGCAACAAACAGAGGGATGACAGAAGTTAGTGGCACAGA
TATGCGGGCACCTCACGGAATTCCTGTGGACCTCTTGGATCGATGCCTCA
TCATCAGAACTCAACCTTATTCAATGGAAGACATTGCGGTAATCATCCAG
ATTAGAGCTAAGGTGGAAGGTATCGTGTTAAAGGAGGACAACGTTGTCGC
AGCACTGGTTGAGGTTGCTGCTCGCACTTCGCTGCGATACGCAACACAGA
TATTGACCCCCGCGAGCATTCTGTCCAGTGTTAAAGGTCAAGAACATCTG
ACGGCTGCCGACGTTAAGGAGGCGGATGGATTGTTTTACGACGCCAAAGC
CTCCGCTCGAATATTGCGGGAAAGTGCTTCGAAATACATAAGTTGA