Gcaud2423.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2423.t2
Unique Name	Gcaud2423.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	390

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:18494..19663 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	653948.CCA24618
Preferred name	MIS18A
PFAMs	Yippee-Mis18
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11564
GOs	GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000793,GO:0000794,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0022607,GO:0031055,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0034080,GO:0034508,GO:0034622,GO:0034724,GO:0034728,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0048285,GO:0051276,GO:0051382,GO:0051383,GO:0061641,GO:0065003,GO:0065004,GO:0070013,GO:0070925,GO:0071103,GO:0071824,GO:0071840,GO:0098654,GO:0098687,GO:0098813,GO:0140014,GO:1903047
Evalue	7e-13
EggNOG OGs	2E2HP@1\|root,2S9R8@2759\|Eukaryota
Description	CENP-A containing nucleosome assembly
COG category	S
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2423	Gcaud2423	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 18494..19663 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2423.t2.stop1	Gcaud2423.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 18494..18496 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2423.t2.CDS1	Gcaud2423.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 18494..19663 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2423.t2.exon1	Gcaud2423.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 18494..19663 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2423.t2.start1	Gcaud2423.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 19661..19663 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2423.t2	Gcaud2423.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 18494..19663 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:18494..19663-
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:18494..19663-

mRNA sequence

>Gcaud2423.t2 ID=Gcaud2423.t2|Name=Gcaud2423.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=390bp
MAKRGYSRRAGARTGEKEKHHDHSKGHAQNQPSDDSSRVRGDNEMHDTAS
EASREQANGNDSVILKNDVQKEPTDSDYSDIIFQCAKCHTVVGDSRSPHV
VNLEHNTLSLRAASNVRVEDKLHVCQKGFACGCTFKRILCDNCDTAVGRI
YSSTVPALDQYRSLYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQR
DGEEPRVSTEDFIALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDS
DNLMKDIRQCLEYTQNIMLVWEERFRNFDSFKERANKLFEEFQGGMKSCQ
STGRKFSKLDASVDRLVIRFGNIERITAKLNAKIDGHKATEARFDDKEPV
VGDKIKGTFAPVPYTLPRNSRYKQQTAGRSSPRAKRRRS*

spliced messenger RNA

>Gcaud2423.t2 ID=Gcaud2423.t2|Name=Gcaud2423.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:18494..19663- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAACGAGGATACTCCAGAAGAGCAGGCGCACGGACTGGAGAAAA
GGAGAAGCACCATGATCACAGCAAAGGCCACGCTCAAAACCAACCTTCAG
ATGACTCAAGCAGAGTGCGTGGGGACAATGAAATGCATGACACTGCTTCC
GAGGCATCGCGCGAACAAGCGAACGGAAACGATTCCGTCATCCTGAAGAA
TGATGTGCAAAAGGAGCCCACTGACAGCGACTACTCGGACATTATTTTTC
AGTGCGCTAAATGTCACACCGTTGTTGGAGACTCACGCTCCCCACATGTT
GTAAATCTCGAGCACAACACACTATCCCTCAGAGCAGCATCAAATGTTCG
TGTTGAGGACAAACTCCATGTATGTCAGAAAGGTTTTGCATGCGGCTGTA
CATTTAAGAGAATACTGTGTGACAACTGCGACACCGCGGTAGGGAGAATC
TACTCTTCAACAGTTCCCGCCCTTGATCAATATCGCTCCTTGTATACACT
TGATTACGACTCCCTCGACAGTTATCGACTTGGATCTGGAAGGACCCCGG
ATGGTGAGACGCTTGATGTCCCGAACTCTCAGCATCCCAAACCTCAGCGT
GATGGAGAGGAACCGCGTGTGTCAACGGAAGACTTCATTGCCCTTGACAC
ATATGTTACTGATCTCGGTAAGGCGGTGAATAAGCAAACTGATGCTATGG
ATCAGTACGGCAAGGCTCTTGAAGAACTGCAAAAGGACTTCAAGGACTCT
GACAATTTGATGAAAGACATTCGTCAGTGTCTTGAATACACACAGAATAT
AATGTTAGTCTGGGAAGAGAGGTTCAGAAACTTTGATTCCTTTAAGGAGA
GAGCAAATAAGTTATTCGAAGAGTTTCAGGGTGGTATGAAGAGTTGTCAA
AGCACGGGACGGAAATTCTCGAAACTTGACGCTAGTGTCGATAGACTCGT
GATCCGTTTTGGCAACATAGAGCGCATAACAGCGAAACTCAATGCCAAGA
TCGATGGACACAAAGCCACGGAAGCGCGTTTTGACGACAAGGAACCTGTA
GTAGGCGACAAAATCAAAGGCACATTCGCACCTGTTCCTTACACTCTTCC
CAGGAATAGCAGGTATAAACAACAAACAGCGGGAAGATCTTCACCAAGAG
CCAAGCGGCGACGCTCATGA

protein sequence of Gcaud2423.t2

>Gcaud2423.t2 ID=Gcaud2423.t2|Name=Gcaud2423.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=390bp
MAKRGYSRRAGARTGEKEKHHDHSKGHAQNQPSDDSSRVRGDNEMHDTAS
EASREQANGNDSVILKNDVQKEPTDSDYSDIIFQCAKCHTVVGDSRSPHV
VNLEHNTLSLRAASNVRVEDKLHVCQKGFACGCTFKRILCDNCDTAVGRI
YSSTVPALDQYRSLYTLDYDSLDSYRLGSGRTPDGETLDVPNSQHPKPQR
DGEEPRVSTEDFIALDTYVTDLGKAVNKQTDAMDQYGKALEELQKDFKDS
DNLMKDIRQCLEYTQNIMLVWEERFRNFDSFKERANKLFEEFQGGMKSCQ
STGRKFSKLDASVDRLVIRFGNIERITAKLNAKIDGHKATEARFDDKEPV
VGDKIKGTFAPVPYTLPRNSRYKQQTAGRSSPRAKRRRS*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:18494..19663-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2423.t2 ID=Gcaud2423.t2|Name=Gcaud2423.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:18494..19663- (Gracilaria caudata M_176_S67 male)
ATGGCGAAACGAGGATACTCCAGAAGAGCAGGCGCACGGACTGGAGAAAA
GGAGAAGCACCATGATCACAGCAAAGGCCACGCTCAAAACCAACCTTCAG
ATGACTCAAGCAGAGTGCGTGGGGACAATGAAATGCATGACACTGCTTCC
GAGGCATCGCGCGAACAAGCGAACGGAAACGATTCCGTCATCCTGAAGAA
TGATGTGCAAAAGGAGCCCACTGACAGCGACTACTCGGACATTATTTTTC
AGTGCGCTAAATGTCACACCGTTGTTGGAGACTCACGCTCCCCACATGTT
GTAAATCTCGAGCACAACACACTATCCCTCAGAGCAGCATCAAATGTTCG
TGTTGAGGACAAACTCCATGTATGTCAGAAAGGTTTTGCATGCGGCTGTA
CATTTAAGAGAATACTGTGTGACAACTGCGACACCGCGGTAGGGAGAATC
TACTCTTCAACAGTTCCCGCCCTTGATCAATATCGCTCCTTGTATACACT
TGATTACGACTCCCTCGACAGTTATCGACTTGGATCTGGAAGGACCCCGG
ATGGTGAGACGCTTGATGTCCCGAACTCTCAGCATCCCAAACCTCAGCGT
GATGGAGAGGAACCGCGTGTGTCAACGGAAGACTTCATTGCCCTTGACAC
ATATGTTACTGATCTCGGTAAGGCGGTGAATAAGCAAACTGATGCTATGG
ATCAGTACGGCAAGGCTCTTGAAGAACTGCAAAAGGACTTCAAGGACTCT
GACAATTTGATGAAAGACATTCGTCAGTGTCTTGAATACACACAGAATAT
AATGTTAGTCTGGGAAGAGAGGTTCAGAAACTTTGATTCCTTTAAGGAGA
GAGCAAATAAGTTATTCGAAGAGTTTCAGGGTGGTATGAAGAGTTGTCAA
AGCACGGGACGGAAATTCTCGAAACTTGACGCTAGTGTCGATAGACTCGT
GATCCGTTTTGGCAACATAGAGCGCATAACAGCGAAACTCAATGCCAAGA
TCGATGGACACAAAGCCACGGAAGCGCGTTTTGACGACAAGGAACCTGTA
GTAGGCGACAAAATCAAAGGCACATTCGCACCTGTTCCTTACACTCTTCC
CAGGAATAGCAGGTATAAACAACAAACAGCGGGAAGATCTTCACCAAGAG
CCAAGCGGCGACGCTCATGA

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:18494..19663-

>Gcaud2423.t2 ID=Gcaud2423.t2|Name=Gcaud2423.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1170bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:18494..19663- (Gracilaria caudata M_176_S67 male)
ATGGCGAAACGAGGATACTCCAGAAGAGCAGGCGCACGGACTGGAGAAAA
GGAGAAGCACCATGATCACAGCAAAGGCCACGCTCAAAACCAACCTTCAG
ATGACTCAAGCAGAGTGCGTGGGGACAATGAAATGCATGACACTGCTTCC
GAGGCATCGCGCGAACAAGCGAACGGAAACGATTCCGTCATCCTGAAGAA
TGATGTGCAAAAGGAGCCCACTGACAGCGACTACTCGGACATTATTTTTC
AGTGCGCTAAATGTCACACCGTTGTTGGAGACTCACGCTCCCCACATGTT
GTAAATCTCGAGCACAACACACTATCCCTCAGAGCAGCATCAAATGTTCG
TGTTGAGGACAAACTCCATGTATGTCAGAAAGGTTTTGCATGCGGCTGTA
CATTTAAGAGAATACTGTGTGACAACTGCGACACCGCGGTAGGGAGAATC
TACTCTTCAACAGTTCCCGCCCTTGATCAATATCGCTCCTTGTATACACT
TGATTACGACTCCCTCGACAGTTATCGACTTGGATCTGGAAGGACCCCGG
ATGGTGAGACGCTTGATGTCCCGAACTCTCAGCATCCCAAACCTCAGCGT
GATGGAGAGGAACCGCGTGTGTCAACGGAAGACTTCATTGCCCTTGACAC
ATATGTTACTGATCTCGGTAAGGCGGTGAATAAGCAAACTGATGCTATGG
ATCAGTACGGCAAGGCTCTTGAAGAACTGCAAAAGGACTTCAAGGACTCT
GACAATTTGATGAAAGACATTCGTCAGTGTCTTGAATACACACAGAATAT
AATGTTAGTCTGGGAAGAGAGGTTCAGAAACTTTGATTCCTTTAAGGAGA
GAGCAAATAAGTTATTCGAAGAGTTTCAGGGTGGTATGAAGAGTTGTCAA
AGCACGGGACGGAAATTCTCGAAACTTGACGCTAGTGTCGATAGACTCGT
GATCCGTTTTGGCAACATAGAGCGCATAACAGCGAAACTCAATGCCAAGA
TCGATGGACACAAAGCCACGGAAGCGCGTTTTGACGACAAGGAACCTGTA
GTAGGCGACAAAATCAAAGGCACATTCGCACCTGTTCCTTACACTCTTCC
CAGGAATAGCAGGTATAAACAACAAACAGCGGGAAGATCTTCACCAAGAG
CCAAGCGGCGACGCTCATGA