Gcaud2421.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2421.t1
Unique Name	Gcaud2421.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	73

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:15963..16253 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6669.EFX87625
Preferred name	TXNRD1
PFAMs	Glutaredoxin,Pyr_redox_2,Pyr_redox_dim
Max annot lvl	33208\|Metazoa
KEGG rclass	RC02518,RC02873
KEGG ko	ko:K22182
KEGG Reaction	R03596,R09372
KEGG Pathway	ko00450,ko05200,ko05225,map00450,map05200,map05225
GOs	GO:0000003,GO:0000302,GO:0000305,GO:0001650,GO:0001704,GO:0001707,GO:0001887,GO:0001890,GO:0003006,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006082,GO:0006139,GO:0006518,GO:0006520,GO:0006575,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006749,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009069,GO:0009117,GO:0009611,GO:0009628,GO:0009636,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0010269,GO:0010941,GO:0010942,GO:0012505,GO:0015036,GO:0015949,GO:0016043,GO:0016174,GO:0016209,GO:0016259,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016999,GO:0017001,GO:0017144,GO:0018996,GO:0019216,GO:0019222,GO:0019362,GO:0019637,GO:0019725,GO:0019752,GO:0022404,GO:0022414,GO:0022607,GO:0023052,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0033797,GO:0034599,GO:0034641,GO:0036295,GO:0036296,GO:0036477,GO:0042221,GO:0042303,GO:0042395,GO:0042493,GO:0042537,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045340,GO:0045454,GO:0046483,GO:0046496,GO:0046688,GO:0046872,GO:0046914,GO:0046983,GO:0048332,GO:0048513,GO:0048518,GO:0048522,GO:0048598,GO:0048608,GO:0048646,GO:0048678,GO:0048729,GO:0048731,GO:0048856,GO:0050664,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051259,GO:0051262,GO:0051716,GO:0055086,GO:0055093,GO:0055114,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070276,GO:0070482,GO:0070887,GO:0070995,GO:0071241,GO:0071248,GO:0071280,GO:0071453,GO:0071455,GO:0071704,GO:0071840,GO:0072524,GO:0072593,GO:0080090,GO:0097237,GO:0097458,GO:0098623,GO:0098625,GO:0098626,GO:0098754,GO:0098869,GO:1901360,GO:1901564,GO:1901605,GO:1901700,GO:1990748
Evalue	1.12e-21
EggNOG OGs	COG0695@1\|root,COG1249@1\|root,KOG1752@2759\|Eukaryota,KOG4716@2759\|Eukaryota,38BHT@33154\|Opisthokonta,3BBN5@33208\|Metazoa,3CS3G@33213\|Bilateria,41W65@6656\|Arthropoda
EC	1.8.1.9
Description	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2421	Gcaud2421	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 15963..16253 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2421.t1	Gcaud2421.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 15963..16253 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2421.t1.stop1	Gcaud2421.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 15963..15965 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2421.t1.CDS1	Gcaud2421.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 15963..16015 -
Gcaud2421.t1.CDS2	Gcaud2421.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 16088..16253 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2421.t1.exon1	Gcaud2421.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 15963..16015 -
Gcaud2421.t1.exon2	Gcaud2421.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 16088..16253 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2421.t1.intron1	Gcaud2421.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_295_length_31939_cov_4.445679 16016..16087 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2421.t1.start1	Gcaud2421.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 16251..16253 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:15963..16253-
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:15963..16253-

mRNA sequence

>Gcaud2421.t1 ID=Gcaud2421.t1|Name=Gcaud2421.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=73bp
MRVKSLFSDLNVDHTVWELDEREDGDDIKGVLLEKTGQRTVPNVFVNGKH
VGGCDDTMDLHQKGQLLGMINA*

spliced messenger RNA

>Gcaud2421.t1 ID=Gcaud2421.t1|Name=Gcaud2421.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=219bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:15963..16253- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTGAAATCTCTATTTAGCGATCTTAATGTTGACCACACCGTTTG
GGAGCTTGATGAGAGAGAGGACGGCGATGATATTAAGGGTGTTTTACTCG
AAAAAACTGGCCAAAGAACTGTTCCTAATGTGTTTGTAAATGGAAAACAC
GTAGGGGGTTGTGATGACACTATGGATCTTCACCAAAAGGGACAGCTGCT
CGGCATGATTAACGCGTAG

protein sequence of Gcaud2421.t1

>Gcaud2421.t1 ID=Gcaud2421.t1|Name=Gcaud2421.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=73bp
MRVKSLFSDLNVDHTVWELDEREDGDDIKGVLLEKTGQRTVPNVFVNGKH
VGGCDDTMDLHQKGQLLGMINA*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:15963..16253-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2421.t1 ID=Gcaud2421.t1|Name=Gcaud2421.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=291bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:15963..16253- (Gracilaria caudata M_176_S67 male)
ATGCGTGTGAAATCTCTATTTAGCGATCTTAATGTTGACCACACCGTTTG
GGAGCTTGATGAGAGAGAGGACGGCGATGATATTAAGGGTGTTTTACTCG
AAAAAACTGGCCAAAGAACTGTTCCTAATGTGTTTGTAAATGGAAAACAC
GTAGGGGGTTGTGATGGTAAGCTGCATTGATTCTCCCCGTAGAAGATCAA
ATCATGGACTAACATCAGACAAAATGCTACCTGTTTAGACACTATGGATC
TTCACCAAAAGGGACAGCTGCTCGGCATGATTAACGCGTAG

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:15963..16253-

>Gcaud2421.t1 ID=Gcaud2421.t1|Name=Gcaud2421.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=219bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:15963..16253- (Gracilaria caudata M_176_S67 male)
ATGCGTGTGAAATCTCTATTTAGCGATCTTAATGTTGACCACACCGTTTG
GGAGCTTGATGAGAGAGAGGACGGCGATGATATTAAGGGTGTTTTACTCG
AAAAAACTGGCCAAAGAACTGTTCCTAATGTGTTTGTAAATGGAAAACAC
GTAGGGGGTTGTGATGACACTATGGATCTTCACCAAAAGGGACAGCTGCT
CGGCATGATTAACGCGTAG