Gcaud2424.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2424.t1
Unique Name	Gcaud2424.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	413

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:20524..21953 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX50486
PFAMs	MFS_1_like
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11367
Evalue	1.87e-41
EggNOG OGs	KOG3762@1\|root,KOG3762@2759\|Eukaryota
EC	3.6.4.12
Description	MFS_1 like family
COG category	L
BRITE	ko00000,ko01000,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2424	Gcaud2424	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 20524..21953 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2424.t1	Gcaud2424.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 20524..21953 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2424.t1.stop1	Gcaud2424.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 20524..20526 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2424.t1.CDS1	Gcaud2424.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 20524..20527 -
Gcaud2424.t1.CDS2	Gcaud2424.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 20719..21953 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2424.t1.exon1	Gcaud2424.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 20524..20527 -
Gcaud2424.t1.exon2	Gcaud2424.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 20719..21953 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2424.t1.intron1	Gcaud2424.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_295_length_31939_cov_4.445679 20528..20718 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2424.t1.start1	Gcaud2424.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 21951..21953 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:20524..21953-
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:20524..21953-

mRNA sequence

>Gcaud2424.t1 ID=Gcaud2424.t1|Name=Gcaud2424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=413bp
MAAPGRFSSVFLQAHGLRQSQVGTLLAVHPICDLVATPFFCNFADTHDLR
EMTSIFLSAFAMLFFCAQIIALPGLGIIQGSQMFLFFVAVRALYGIFAAP
AFPLMNGIVLSNLKLRHGHKGHELLGHERIFGALSWASVSLGIGFFLDMF
SSSMVVVYIFFVICSSSYILCIICFAGVTGQAREGMKLSSVERIDTQESS
TEHSRQRSSIAQFLKQLFCSSGLETPLFFNLVFWEAAGMSLVENLLFLFM
QDELHSSNLLCGISVVITVVFEFPIFAKAPELLRTFGAPVLAKLGALSYV
LRAVIYALAPNAWVVLLAEPLHGVTFALFHTASTAYVSDRVPPELEATGQ
SMIAMVAALGRILGTYCGGYIIEAYGSHLLYAGASVLVSIAILAFHIADI
YSDRLCSTPNSE*

spliced messenger RNA

>Gcaud2424.t1 ID=Gcaud2424.t1|Name=Gcaud2424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:20524..21953- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCTCCTGGTCGTTTCTCATCAGTGTTTCTGCAAGCCCATGGGCT
CCGCCAAAGTCAAGTCGGCACTCTCCTGGCAGTCCATCCCATATGCGATT
TAGTGGCTACACCTTTCTTCTGCAACTTCGCAGACACTCATGACCTCAGG
GAAATGACTTCCATCTTTCTTTCTGCTTTTGCCATGCTTTTCTTCTGTGC
TCAAATAATCGCACTTCCCGGGCTCGGTATAATTCAGGGAAGTCAGATGT
TCTTGTTTTTCGTTGCCGTACGTGCTTTGTACGGCATTTTTGCTGCGCCA
GCGTTTCCTCTTATGAACGGCATCGTATTATCAAATCTCAAACTACGTCA
TGGACACAAGGGGCACGAGCTTCTTGGGCATGAGAGAATCTTTGGGGCAC
TCAGCTGGGCTTCAGTCTCTCTCGGAATAGGATTTTTTCTCGACATGTTC
TCTTCTTCAATGGTTGTGGTATATATCTTCTTCGTCATTTGCAGTTCTTC
ATATATTCTTTGTATCATTTGTTTTGCCGGAGTTACGGGGCAGGCTCGAG
AAGGTATGAAGCTGTCCAGCGTCGAAAGAATTGACACCCAGGAGAGCTCC
ACAGAACACTCTAGACAGCGAAGTTCTATAGCTCAGTTCTTAAAACAACT
CTTTTGTTCGAGCGGACTTGAAACACCTTTGTTCTTCAATCTTGTCTTTT
GGGAAGCGGCTGGAATGAGTTTGGTTGAAAATCTCCTATTTCTTTTTATG
CAAGACGAGCTTCATTCGAGCAACCTACTTTGCGGAATTAGCGTTGTCAT
TACGGTCGTATTCGAATTTCCCATCTTCGCCAAAGCGCCGGAGTTGTTGA
GGACATTTGGTGCCCCGGTTCTTGCCAAACTTGGAGCCCTATCCTATGTG
CTCCGAGCAGTTATTTACGCTCTTGCACCTAATGCATGGGTTGTCCTTCT
TGCAGAGCCCTTACATGGAGTTACATTTGCCTTATTCCACACCGCCTCGA
CAGCATATGTATCAGATCGCGTACCACCAGAGCTTGAAGCTACAGGACAA
TCAATGATTGCAATGGTAGCAGCTTTGGGGAGAATACTGGGCACATATTG
TGGGGGTTACATCATTGAAGCATATGGATCCCATTTATTGTACGCAGGTG
CTTCAGTTTTGGTATCCATTGCGATACTTGCGTTCCACATTGCGGATATA
TACTCGGATCGCTTATGTTCGACACCAAATTCAGAGTAG

protein sequence of Gcaud2424.t1

>Gcaud2424.t1 ID=Gcaud2424.t1|Name=Gcaud2424.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=413bp
MAAPGRFSSVFLQAHGLRQSQVGTLLAVHPICDLVATPFFCNFADTHDLR
EMTSIFLSAFAMLFFCAQIIALPGLGIIQGSQMFLFFVAVRALYGIFAAP
AFPLMNGIVLSNLKLRHGHKGHELLGHERIFGALSWASVSLGIGFFLDMF
SSSMVVVYIFFVICSSSYILCIICFAGVTGQAREGMKLSSVERIDTQESS
TEHSRQRSSIAQFLKQLFCSSGLETPLFFNLVFWEAAGMSLVENLLFLFM
QDELHSSNLLCGISVVITVVFEFPIFAKAPELLRTFGAPVLAKLGALSYV
LRAVIYALAPNAWVVLLAEPLHGVTFALFHTASTAYVSDRVPPELEATGQ
SMIAMVAALGRILGTYCGGYIIEAYGSHLLYAGASVLVSIAILAFHIADI
YSDRLCSTPNSE*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:20524..21953-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2424.t1 ID=Gcaud2424.t1|Name=Gcaud2424.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1430bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:20524..21953- (Gracilaria caudata M_176_S67 male)
ATGGCAGCTCCTGGTCGTTTCTCATCAGTGTTTCTGCAAGCCCATGGGCT
CCGCCAAAGTCAAGTCGGCACTCTCCTGGCAGTCCATCCCATATGCGATT
TAGTGGCTACACCTTTCTTCTGCAACTTCGCAGACACTCATGACCTCAGG
GAAATGACTTCCATCTTTCTTTCTGCTTTTGCCATGCTTTTCTTCTGTGC
TCAAATAATCGCACTTCCCGGGCTCGGTATAATTCAGGGAAGTCAGATGT
TCTTGTTTTTCGTTGCCGTACGTGCTTTGTACGGCATTTTTGCTGCGCCA
GCGTTTCCTCTTATGAACGGCATCGTATTATCAAATCTCAAACTACGTCA
TGGACACAAGGGGCACGAGCTTCTTGGGCATGAGAGAATCTTTGGGGCAC
TCAGCTGGGCTTCAGTCTCTCTCGGAATAGGATTTTTTCTCGACATGTTC
TCTTCTTCAATGGTTGTGGTATATATCTTCTTCGTCATTTGCAGTTCTTC
ATATATTCTTTGTATCATTTGTTTTGCCGGAGTTACGGGGCAGGCTCGAG
AAGGTATGAAGCTGTCCAGCGTCGAAAGAATTGACACCCAGGAGAGCTCC
ACAGAACACTCTAGACAGCGAAGTTCTATAGCTCAGTTCTTAAAACAACT
CTTTTGTTCGAGCGGACTTGAAACACCTTTGTTCTTCAATCTTGTCTTTT
GGGAAGCGGCTGGAATGAGTTTGGTTGAAAATCTCCTATTTCTTTTTATG
CAAGACGAGCTTCATTCGAGCAACCTACTTTGCGGAATTAGCGTTGTCAT
TACGGTCGTATTCGAATTTCCCATCTTCGCCAAAGCGCCGGAGTTGTTGA
GGACATTTGGTGCCCCGGTTCTTGCCAAACTTGGAGCCCTATCCTATGTG
CTCCGAGCAGTTATTTACGCTCTTGCACCTAATGCATGGGTTGTCCTTCT
TGCAGAGCCCTTACATGGAGTTACATTTGCCTTATTCCACACCGCCTCGA
CAGCATATGTATCAGATCGCGTACCACCAGAGCTTGAAGCTACAGGACAA
TCAATGATTGCAATGGTAGCAGCTTTGGGGAGAATACTGGGCACATATTG
TGGGGGTTACATCATTGAAGCATATGGATCCCATTTATTGTACGCAGGTG
CTTCAGTTTTGGTATCCATTGCGATACTTGCGTTCCACATTGCGGATATA
TACTCGGATCGCTTATGTTCGACACCAAATTCAGAGTACGTATGAAGCTC
CTAAAACGAAAGTAATACGATAGTACAGATTGTTTTCATTGCAATGGTGG
ACGAGCATTTCTATACATGAGACATCCAGATGAACGACTGGACATGATTC
ATTACGGAACCAGAGCTGATTGAAGATTAGAAGGCTTGATCGAGTTTGCT
GACACACTGGTGGTGTTTTTACGAAGGTAG

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:20524..21953-

>Gcaud2424.t1 ID=Gcaud2424.t1|Name=Gcaud2424.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1239bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:20524..21953- (Gracilaria caudata M_176_S67 male)
ATGGCAGCTCCTGGTCGTTTCTCATCAGTGTTTCTGCAAGCCCATGGGCT
CCGCCAAAGTCAAGTCGGCACTCTCCTGGCAGTCCATCCCATATGCGATT
TAGTGGCTACACCTTTCTTCTGCAACTTCGCAGACACTCATGACCTCAGG
GAAATGACTTCCATCTTTCTTTCTGCTTTTGCCATGCTTTTCTTCTGTGC
TCAAATAATCGCACTTCCCGGGCTCGGTATAATTCAGGGAAGTCAGATGT
TCTTGTTTTTCGTTGCCGTACGTGCTTTGTACGGCATTTTTGCTGCGCCA
GCGTTTCCTCTTATGAACGGCATCGTATTATCAAATCTCAAACTACGTCA
TGGACACAAGGGGCACGAGCTTCTTGGGCATGAGAGAATCTTTGGGGCAC
TCAGCTGGGCTTCAGTCTCTCTCGGAATAGGATTTTTTCTCGACATGTTC
TCTTCTTCAATGGTTGTGGTATATATCTTCTTCGTCATTTGCAGTTCTTC
ATATATTCTTTGTATCATTTGTTTTGCCGGAGTTACGGGGCAGGCTCGAG
AAGGTATGAAGCTGTCCAGCGTCGAAAGAATTGACACCCAGGAGAGCTCC
ACAGAACACTCTAGACAGCGAAGTTCTATAGCTCAGTTCTTAAAACAACT
CTTTTGTTCGAGCGGACTTGAAACACCTTTGTTCTTCAATCTTGTCTTTT
GGGAAGCGGCTGGAATGAGTTTGGTTGAAAATCTCCTATTTCTTTTTATG
CAAGACGAGCTTCATTCGAGCAACCTACTTTGCGGAATTAGCGTTGTCAT
TACGGTCGTATTCGAATTTCCCATCTTCGCCAAAGCGCCGGAGTTGTTGA
GGACATTTGGTGCCCCGGTTCTTGCCAAACTTGGAGCCCTATCCTATGTG
CTCCGAGCAGTTATTTACGCTCTTGCACCTAATGCATGGGTTGTCCTTCT
TGCAGAGCCCTTACATGGAGTTACATTTGCCTTATTCCACACCGCCTCGA
CAGCATATGTATCAGATCGCGTACCACCAGAGCTTGAAGCTACAGGACAA
TCAATGATTGCAATGGTAGCAGCTTTGGGGAGAATACTGGGCACATATTG
TGGGGGTTACATCATTGAAGCATATGGATCCCATTTATTGTACGCAGGTG
CTTCAGTTTTGGTATCCATTGCGATACTTGCGTTCCACATTGCGGATATA
TACTCGGATCGCTTATGTTCGACACCAAATTCAGAGTAG